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#Htsjdk.samtools.filter Classes and Interfaces - 19 results found.
Name | Description | Type | Package | Framework |
AbstractJavascriptFilter | Javascript filter with HEADER type containing TYPE records. | Class | htsjdk.samtools.filter | HtsJDK |
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AggregateFilter | | Class | htsjdk.samtools.filter | HtsJDK |
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AlignedFilter | | Class | htsjdk.samtools.filter | HtsJDK |
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DuplicateReadFilter | | Class | htsjdk.samtools.filter | HtsJDK |
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FailsVendorReadQualityFilter | | Class | htsjdk.samtools.filter | HtsJDK |
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FilteringIterator | Filtering Iterator which takes a filter and an iterator and iterates through only those records which are not rejected by the filter. | Class | htsjdk.samtools.filter | HtsJDK |
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InsertSizeFilter | Filter things that fall outside a specified range of insert sizes. | Class | htsjdk.samtools.filter | HtsJDK |
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IntervalFilter | Filter SAMRecords so that only those that overlap the given list of intervals. | Class | htsjdk.samtools.filter | HtsJDK |
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JavascriptSamRecordFilter | javascript based read filter The script puts the following variables in the script context: | Class | htsjdk.samtools.filter | HtsJDK |
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MappingQualityFilter | Filter things with low mapping quality. | Class | htsjdk.samtools.filter | HtsJDK |
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NotPrimaryAlignmentFilter | | Class | htsjdk.samtools.filter | HtsJDK |
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OverclippedReadFilter | Filters out reads with very few unclipped bases, likely due to the read coming from a foreign organism, e. | Class | htsjdk.samtools.filter | HtsJDK |
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ReadNameFilter | | Class | htsjdk.samtools.filter | HtsJDK |
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SamRecordFilter | API for filtering SAMRecordsDetermines whether a SAMRecord matches this filter | Interface | htsjdk.samtools.filter | HtsJDK |
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SecondaryAlignmentFilter | SamRecordFilter that filters out secondary alignments, but not supplemental alignments. | Class | htsjdk.samtools.filter | HtsJDK |
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SecondaryOrSupplementaryFilter | Filter out SAMRecords with NotPrimaryAlignment or Supplementary flag set This class should be viewed as a replacement for NotPrimarySkippingIterator, | Class | htsjdk.samtools.filter | HtsJDK |
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SolexaNoiseFilter | Filter to determine whether a read is "noisy" due to a poly-A run that is a sequencing artifact. | Class | htsjdk.samtools.filter | HtsJDK |
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TagFilter | | Class | htsjdk.samtools.filter | HtsJDK |
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WholeReadClippedFilter | Filter SAMRecords so that only those that have at least one un-clipped base areAuthor:ktibbett@broadinstitute. | Class | htsjdk.samtools.filter | HtsJDK |