#Htsjdk.variant.vcf Classes and Interfaces

_{#Htsjdk.variant.vcf Classes and Interfaces - 24 results found.}

Name	Description	Type	Package	Framework
AbstractVCFCodec		Class	htsjdk.variant.vcf	HtsJDK
VCF3Codec	A feature codec for the VCF3 specification, to read older VCF files.	Class	htsjdk.variant.vcf	HtsJDK
VCFCodec	A feature codec for the VCF 4 specification VCF is a text file format (most likely stored in a compressed manner).	Class	htsjdk.variant.vcf	HtsJDK
VCFCompoundHeaderLine	a base class for compound header lines, which include info lines and format lines (so far)See Also:Serialized Form	Class	htsjdk.variant.vcf	HtsJDK
VCFCompoundHeaderLine .SupportedHeaderLineType		Class	htsjdk.variant.vcf	HtsJDK
VCFConstants		Class	htsjdk.variant.vcf	HtsJDK
VCFContigHeaderLine	A special class representing a contig VCF header line.	Class	htsjdk.variant.vcf	HtsJDK
VCFEncoder	Functions specific to encoding VCF records.	Class	htsjdk.variant.vcf	HtsJDK
VCFFileReader	Simplified interface for reading from VCF/BCF files.	Class	htsjdk.variant.vcf	HtsJDK
VCFFilterHeaderLine		Class	htsjdk.variant.vcf	HtsJDK
VCFFormatHeaderLine	Class VCFFormatHeaderLine A class representing a key=value entry for genotype FORMAT fields in the VCF headerSee Also:Serialized Form	Class	htsjdk.variant.vcf	HtsJDK
VCFHeader	A class to represent a VCF header NOTE: This class stores header lines in lots of places.	Class	htsjdk.variant.vcf	HtsJDK
VCFHeader .HEADER_FIELDS	Returns the enum constant of this type with the specified name.	Class	htsjdk.variant.vcf	HtsJDK
VCFHeaderLine	Class VCFHeaderLine A class representing a key=value entry in the VCF header	Class	htsjdk.variant.vcf	HtsJDK
VCFHeaderLineCount	enum VCFHeaderLineCountthe count encodings we use for fields in VCF header lines	Class	htsjdk.variant.vcf	HtsJDK
VCFHeaderLineTranslator		Class	htsjdk.variant.vcf	HtsJDK
VCFHeaderLineType	enum VCFHeaderLineTypethe type encodings we use for fields in VCF header lines	Class	htsjdk.variant.vcf	HtsJDK
VCFHeaderVersion	enum VCFHeaderVersioninformation that identifies each header version	Class	htsjdk.variant.vcf	HtsJDK
VCFIDHeaderLine		Interface	htsjdk.variant.vcf	HtsJDK
VCFInfoHeaderLine	Class VCFInfoHeaderLine A class representing a key=value entry for INFO fields in the VCF header	Class	htsjdk.variant.vcf	HtsJDK
VCFRecordCodec	Writes VariantContext instances to an OutputStream without headers or metadata.	Class	htsjdk.variant.vcf	HtsJDK
VCFSimpleHeaderLine		Class	htsjdk.variant.vcf	HtsJDK
VCFStandardHeaderLines	Manages header lines for standard VCF INFO and FORMAT fields.	Class	htsjdk.variant.vcf	HtsJDK
VCFUtils		Class	htsjdk.variant.vcf	HtsJDK

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