Name | Description | Type | Package | Framework |
About | Displays a small information dialog about the Bio-Formats Plugins package. | Class | loci.plugins | Fiji |
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BF | Miscellaneous plugins utility methods. | Class | loci.plugins | Fiji |
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BFVirtualStack | Subclass of VirtualStack that uses Bio-Formats to read planes on demand. | Class | loci.plugins.util | Fiji |
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BooleanOption | A boolean option for one of the plugins. | Class | loci.plugins.prefs | Fiji |
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BrowserOptionsWindow | Extension of JFrame that allows the user to adjust caching settings. | Class | loci.plugins.util | Fiji |
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Calibrator | Logic for calibrating images. | Class | loci.plugins.in | Fiji |
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CropDialog | Bio-Formats Importer crop options dialog box. | Class | loci.plugins.in | Fiji |
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DataBrowser | Extension of StackWindow with additional UI trimmings for animation, virtual stack caching options, metadata, and general beautification. | Class | loci.plugins.util | Fiji |
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DisplayHandler | Logic for displaying images and metadata onscreen using ImageJ. | Class | loci.plugins.in | Fiji |
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DoubleOption | A double option for one of the plugins. | Class | loci.plugins.prefs | Fiji |
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Exporter | Core logic for the Bio-Formats Exporter ImageJ plugin. | Class | loci.plugins.out | Fiji |
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FilePatternDialog | Bio-Formats Importer file pattern dialog box. | Class | loci.plugins.in | Fiji |
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FlexWidgets | Custom widgets for configuring Bio-Formats Flex support. | Class | loci.plugins.config | Fiji |
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FormatEntry | A list entry for the configuration window's Formats tab. | Class | loci.plugins.config | Fiji |
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IdDialog | Bio-Formats Importer id chooser dialog box. | Class | loci.plugins.in | Fiji |
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IFormatWidgets | Interface for defining custom widgets for a specific file format reader. | Interface | loci.plugins.config | Fiji |
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IJStatusEchoer | Echoes status messages to the ImageJ status bar. | Class | loci.plugins.util | Fiji |
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ImagePlusReader | A high-level reader for ImagePlus objects. | Class | loci.plugins.in | Fiji |
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ImageProcessorReader | A low-level reader for ImageProcessor objects. | Class | loci.plugins.util | Fiji |
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ImageProcessorSource | Retrieves ImageJ image processors from an image reader. | Class | loci.plugins.util | Fiji |
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Importer | Core logic for the Bio-Formats Importer ImageJ plugin. | Class | loci.plugins.in | Fiji |
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ImporterDialog | Abstract superclass of importer dialogs. | Class | loci.plugins.in | Fiji |
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ImporterMetadata | Helper class for storing original metadata key/value pairs. | Class | loci.plugins.in | Fiji |
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ImporterOptions | Helper class for managing Bio-Formats Importer options. | Class | loci.plugins.in | Fiji |
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ImporterPrompter | Helper class for presenting the user with dialog boxes for configuring importer options. | Class | loci.plugins.in | Fiji |
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ImportProcess | Manages the import preparation process. | Class | loci.plugins.in | Fiji |
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ImportStep | An enumeration of the steps in the import preparation process. | Class | loci.plugins.in | Fiji |
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InstallWizard | A wizard for walking users through installation of third party libraries and plugins used by the Bio-Formats plugins. | Class | loci.plugins.config | Fiji |
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LibraryChecker | Utility methods for verifying that classes are present and versions are correct. | Class | loci.plugins.util | Fiji |
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LibraryChecker .Library | List of possible libraries for which to check. | Class | loci.plugins.util.LibraryChecker | Fiji |
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LibraryEntry | A list entry for the configuration window's Libraries tab. | Class | loci.plugins.config | Fiji |
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LocationDialog | Bio-Formats Importer location chooser dialog box. | Class | loci.plugins.in | Fiji |
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LociConfig | An ImageJ plugin for displaying the Bio-Formats plugins configuration dialog. | Class | loci.plugins.config | Fiji |
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LociExporter | ImageJ plugin for writing files using the OME Bio-Formats package. | Class | loci.plugins | Fiji |
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LociFunctions | This class provides macro extensions in ImageJ for Bio-Formats. | Class | loci.plugins.macro | Fiji |
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LociImporter | ImageJ plugin for reading files using the OME Bio-Formats package. | Class | loci.plugins | Fiji |
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LociInstaller | An ImageJ plugin for installing and upgrading libraries related to the Bio-Formats plugins. | Class | loci.plugins.config | Fiji |
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LociPrefs | Utility methods for ImageJ preferences for Bio-Formats plugins. | Class | loci.plugins.util | Fiji |
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LuraWave | Utility methods for dealing with proprietary LuraWave licensing. | Class | loci.plugins.util | Fiji |
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MacroFunctions | Convenience class that simplifies implemention of ImageJ macro extensions. | Class | loci.plugins.macro | Fiji |
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MainDialog | Bio-Formats Importer general options dialog box. | Class | loci.plugins.in | Fiji |
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MemoryDialog | Bio-Formats Importer memory usage confirmation dialog box. | Class | loci.plugins.in | Fiji |
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ND2Widgets | Custom widgets for configuring Bio-Formats ND2 support. | Class | loci.plugins.config | Fiji |
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Option | Base class for an option for one of the plugins. | Class | loci.plugins.prefs | Fiji |
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OptionsDialog | Base class for options dialogs. | Class | loci.plugins.prefs | Fiji |
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OptionsList | Base class for ImageJ preferences for plugins. | Class | loci.plugins.prefs | Fiji |
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PictWidgets | Custom widgets for configuring Bio-Formats PICT support. | Class | loci.plugins.config | Fiji |
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QTWidgets | Custom widgets for configuring Bio-Formats QuickTime support. | Class | loci.plugins.config | Fiji |
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RangeDialog | Bio-Formats Importer range chooser dialog box. | Class | loci.plugins.in | Fiji |
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RecordedImageProcessor | Image processor extension that records commands executed upon it. | Class | loci.plugins.util | Fiji |
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ROIHandler | Utility class for managing regions of interest within ImageJ. | Class | loci.plugins.util | Fiji |
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SDTWidgets | Custom widgets for configuring Bio-Formats SDT support. | Class | loci.plugins.config | Fiji |
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SearchableWindow | Text panel with search capabilities. | Class | loci.plugins.util | Fiji |
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SeriesDialog | Bio-Formats Importer series chooser dialog box. | Class | loci.plugins.in | Fiji |
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ShortcutPanel | A plugin that displays a small window containing shortcuts to the plugins, including the Bio-Formats Importer, Bio-Formats Exporter, | Class | loci.plugins.shortcut | Fiji |
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ShortcutTransferHandler | Drag and drop transfer handler for Bio-Formats Plugins Shortcut Window. | Class | loci.plugins.shortcut | Fiji |
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Slicer | A plugin for splitting an image stack into separate channels, focal planes and/or time points. | Class | loci.plugins | Fiji |
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SpringUtilities | A 1. | Class | loci.plugins.config | Fiji |
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StringOption | A string option for one of the plugins. | Class | loci.plugins.prefs | Fiji |
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SwapDialog | Bio-Formats Importer dimension swapper dialog box. | Class | loci.plugins.in | Fiji |
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TextAreaWriter | Writer implementation that writes to a JTextArea document. | Class | loci.plugins.config | Fiji |
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ThumbLoader | Loads thumbnails for Bio-Formats Importer series chooser in a separate thread. | Class | loci.plugins.in | Fiji |
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TiffDelegateWidgets | Custom widgets for configuring Bio-Formats TIFF support. | Class | loci.plugins.config | Fiji |
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Updater | A plugin for updating the Bio-Formats plugins. | Class | loci.plugins | Fiji |
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UpgradeDialog | Bio-Formats Importer upgrade checker dialog box. | Class | loci.plugins.in | Fiji |
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VirtualImagePlus | Extension of ImagePlus that supports Bio-Formats-driven virtual stacks. | Class | loci.plugins.util | Fiji |
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VirtualReader | | Class | loci.plugins.util | Fiji |
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WindowTools | Utility methods for managing ImageJ dialogs and windows. | Class | loci.plugins.util | Fiji |