| Name | Description | Type | Package | Framework |
| MolecularApplet | See Also:Serialized FormFields inherited from class edu. | Class | molecular | Fislet (Physlets) |
| MolecularMembrane | See Also:Serialized FormFields inherited from class edu. | Class | molecular | Fislet (Physlets) |
| MolecularPiston | See Also:Serialized FormFields inherited from class edu. | Class | molecular | Fislet (Physlets) |
| MolecularScene | protected MolecularScene(javax. | Class | org.jscience.chemistry.gui.extended.graphics3d | JScience |
| DebugMolecularFormula | Class | org.openscience.cdk.debug | CDK | |
| DebugMolecularFormulaSet | Class | org.openscience.cdk.debug | CDK | |
| IMolecularDescriptor | Classes that implement this interface are QSAR descriptor calculators for IMolecule objects. | Interface | org.openscience.cdk.qsar | CDK |
| IMolecularFormula | Class defining a molecular formula object. | Interface | org.openscience.cdk.interfaces | CDK |
| IMolecularFormulaSet | Class defining a molecular formula object. | Interface | org.openscience.cdk.interfaces | CDK |
| IPMolecularLearningDescriptor | This class returns the ionization potential of a molecule. | Class | org.openscience.cdk.qsar.descriptors.molecular | CDK |
| MolecularFormula | Class defining a molecular formula object. | Class | org.openscience.cdk.formula | CDK |
| MolecularFormula | Class defining a molecular formula object. | Class | org.openscience.cdk.silent | CDK |
| MolecularFormulaChecker | Validate a molecular formula given in IMolecularformula object. | Class | org.openscience.cdk.formula | CDK |
| MolecularFormulaManipulator | Class with convenience methods that provide methods to manipulate IMolecularFormula's. | Class | org.openscience.cdk.tools.manipulator | CDK |
| MolecularFormulaRange | Class defining a expanded molecular formula object. | Class | org.openscience.cdk.formula | CDK |
| MolecularFormulaRangeManipulator | Class with convenience methods that provide methods to manipulate MolecularFormulaRange's. | Class | org.openscience.cdk.tools.manipulator | CDK |
| MolecularFormulaSet | Class defining an set object of MolecularFormulas. | Class | org.openscience.cdk.formula | CDK |
| MolecularFormulaSet | Class defining an set object of MolecularFormulas. | Class | org.openscience.cdk.silent | CDK |
| MolecularFormulaSetManipulator | Class with convenience methods that provide methods to manipulate MolecularFormulaSet's. | Class | org.openscience.cdk.tools.manipulator | CDK |
| NNMolecularFormula | Class | org.openscience.cdk.nonotify | CDK | |
| NNMolecularFormulaSet | Class | org.openscience.cdk.nonotify | CDK | |
| MolecularFunctionAnnotationReader | The purpose of this class is to convert a 'gene_association. | Class | cytoscape.cruft.obo | CytoScape |
| MolecularFunctionAnnotationTester | Class | cytoscape.cruft.obo.test | CytoScape | |