Name | Description | Type | Package | Framework |
AbstractRegionalExtremaFinder | | Class | mpicbg.imglib.algorithm.extremafinder | Fiji |
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AdaptiveNonMaximalSuppression | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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Algorithm | | Interface | mpicbg.imglib.algorithm | Fiji |
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AllConnectedComponents | Label all 8-connected components of a binary imageAuthor:Lee Kamentsky | Class | mpicbg.imglib.algorithm.labeling | Fiji |
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AllConnectedComponents .PositionStack | | Class | mpicbg.imglib.algorithm.labeling.AllConnectedComponents | Fiji |
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AnisotropicDiffusion | Perona & Malik Anisotropic diffusion This algorithm implements the so-called anisotropic diffusion scheme of Perona & Malik, 1990, | Class | mpicbg.imglib.algorithm.pde | Fiji |
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AnisotropicDiffusion .DiffusionFunction | The interface that function suitable to be diffusion function must implement. | Interface | mpicbg.imglib.algorithm.pde.AnisotropicDiffusion | Fiji |
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AnisotropicDiffusion .StrongEdgeEnhancer | The first diffusion function proposed by Perona & Malik. | Class | mpicbg.imglib.algorithm.pde.AnisotropicDiffusion | Fiji |
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AnisotropicDiffusion .WideRegionEnhancer | The second diffusion function proposed by Perona & Malik. | Class | mpicbg.imglib.algorithm.pde.AnisotropicDiffusion | Fiji |
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Bandpass | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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Benchmark | | Interface | mpicbg.imglib.algorithm | Fiji |
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BenchmarkAlgorithm | This is a convenience implementation of an algorithm that implements Benchmark and Algorithm so that less code has to be re-implemented. | Class | mpicbg.imglib.algorithm | Fiji |
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BinaryInterpolation2D | Given two binary images of the same dimensions, generate an interpolated image that sits somewhere | Class | mpicbg.imglib.algorithm.labeling | Fiji |
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CanvasImage | | Class | mpicbg.imglib.algorithm | Fiji |
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CrossCorrelation | | Class | mpicbg.imglib.algorithm.correlation | Fiji |
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DifferenceOfGaussian | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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DifferenceOfGaussian .SpecialPoint | | Class | mpicbg.imglib.algorithm.scalespace.DifferenceOfGaussian | Fiji |
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DifferenceOfGaussianPeak | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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DifferenceOfGaussianReal | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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DifferenceOfGaussianReal1 | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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DirectConvolution | DirectConvolution is an ROIAlgorithm designed to do both convolution and cross-correlation by operating on the image and kernel directly, rather than by using such time-saving tricks as | Class | mpicbg.imglib.algorithm.roi | Fiji |
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DirectCrossCorr | DirectCrossCorr performs direct cross-correlation of a kernel against an image. | Class | mpicbg.imglib.algorithm.roi | Fiji |
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DiscreteIntHistogramBinFactory | A HistogramBinFactory to be used to create a discrete Histogram over integer-valued Type's. | Class | mpicbg.imglib.algorithm.histogram.discrete | Fiji |
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DistanceComparator | Compares which Leaf is closer to another LeafAuthor:Johannes Schindelin, Stephan Preibisch | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
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DownSample | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
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FFTFunctions | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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FitFunction | Interface for fitting-target functions. | Interface | mpicbg.imglib.algorithm.peak | Fiji |
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FloydSteinbergDithering | | Class | mpicbg.imglib.algorithm.floydsteinberg | Fiji |
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FourierConvolution | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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FourierTransform | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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FourierTransform .FFTOptimization | | Class | mpicbg.imglib.algorithm.fft.FourierTransform | Fiji |
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FourierTransform .PreProcessing | | Class | mpicbg.imglib.algorithm.fft.FourierTransform | Fiji |
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FourierTransform .Rearrangement | | Class | mpicbg.imglib.algorithm.fft.FourierTransform | Fiji |
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GaussianConvolution | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
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GaussianConvolution2 | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
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GaussianConvolution3 | Computes a Gaussian Convolution on any Type(A) for which is defined how to convert it into a NumericType(B) on which the convolution is performed and back to the desired output Type(C). | Class | mpicbg.imglib.algorithm.gauss | Fiji |
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GaussianConvolution4 | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
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GaussianConvolutionReal | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
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GaussianMultiDLM | A n-dimensional Gaussian peak function, representing an elliptical Gaussian, with axis constrained to be aligned with the main axis. | Class | mpicbg.imglib.algorithm.peak | Fiji |
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GaussianPeakFitterND | A simple class fit a gaussian to the peaks in a n-dim, 0-background The gaussian can have a different sigma in any direction, but the ellipse main axes still need | Class | mpicbg.imglib.algorithm.peak | Fiji |
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GradientWatershed | This class labels an image where the objects in question have edges that are defined by sharp intensity gradients and have | Class | mpicbg.imglib.algorithm.labeling | Fiji |
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Histogram | | Class | mpicbg.imglib.algorithm.histogram | Fiji |
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HistogramBin | HistogramBin is used by to represent the bins of a histogram. | Class | mpicbg.imglib.algorithm.histogram | Fiji |
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HistogramBinFactory | The HistogramBinFactory interface is used by Histogram to generate HistogramBins and HistogramKeys. | Interface | mpicbg.imglib.algorithm.histogram | Fiji |
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HistogramKey | HistogramKeys are used by Histogram to key HistogramBins Author:Larry Lindsey | Class | mpicbg.imglib.algorithm.histogram | Fiji |
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HoughLineTransform | A class that extends HoughTransform to handle Hough Line voting over an edge map. | Class | mpicbg.imglib.algorithm.transformation | Fiji |
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HoughTransform | | Class | mpicbg.imglib.algorithm.transformation | Fiji |
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ImageCalculator | | Class | mpicbg.imglib.algorithm.math | Fiji |
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ImageCalculatorInPlace | | Class | mpicbg.imglib.algorithm.math | Fiji |
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ImageConverter | | Class | mpicbg.imglib.algorithm.math | Fiji |
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ImageTransform | | Class | mpicbg.imglib.algorithm.transformation | Fiji |
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IntegralImage | n-dimensional integral image that stores sums using type . | Class | mpicbg.imglib.algorithm.integral | Fiji |
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IntegralImageDouble | Special implementation for double using the basic type to sum up the individual lines. | Class | mpicbg.imglib.algorithm.integral | Fiji |
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IntegralImageLong | Special implementation for long using the basic type to sum up the individual lines. | Class | mpicbg.imglib.algorithm.integral | Fiji |
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InverseFourierConvolution | Convolve an image with the inverse of a kernel which is division in the Fourier domain. | Class | mpicbg.imglib.algorithm.fft | Fiji |
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InverseFourierTransform | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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KDTree | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
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Leaf | | Interface | mpicbg.imglib.algorithm.kdtree.node | Fiji |
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LevenbergMarquardtSolver | A collection of static utils implementing a plain Levenberg-Marquardt least-square curve fitting algorithm. | Class | mpicbg.imglib.algorithm.peak | Fiji |
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LocalizablePoint | | Class | mpicbg.imglib.algorithm.math | Fiji |
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MathLib | | Class | mpicbg.imglib.algorithm.math | Fiji |
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MaxProjection | Computes a maximum projection along an arbitrary dimension, if the image in 1-dimensional it will return an Image of size 1 with the max valueAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.algorithm.projection | Fiji |
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MedianFilter | Median filter / morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
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MirrorImage | Mirrors an n-dimensional image along an axis (one of the dimensions). | Class | mpicbg.imglib.algorithm.mirror | Fiji |
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MorphClose | Close morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
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MorphDilate | Dilation morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
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MorphErode | Erosion morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
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MorphOpen | Open morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
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MultiThreaded | | Interface | mpicbg.imglib.algorithm | Fiji |
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MultiThreadedAlgorithm | This is a convenience implementation of an algorithm that implements MultiThreaded and Algorithm so that less code has to be re-implemented. | Class | mpicbg.imglib.algorithm | Fiji |
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MultiThreadedBenchmarkAlgorithm | This is a convenience implementation of an algorithm that implements MultiThreaded, Benchmark and Algorithm so that less code has to be re-implemented. | Class | mpicbg.imglib.algorithm | Fiji |
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NearestNeighborSearch | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
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NNearestNeighborSearch | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
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Node | | Interface | mpicbg.imglib.algorithm.kdtree.node | Fiji |
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NonLeaf | | Class | mpicbg.imglib.algorithm.kdtree.node | Fiji |
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NormalizeImageFloat | Normalizes a given Image so that the sum of all of its pixels is equal to one (or approximately so). | Class | mpicbg.imglib.algorithm.math | Fiji |
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NormalizeImageMinMax | | Class | mpicbg.imglib.algorithm.math | Fiji |
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NormMinMax | | Class | mpicbg.imglib.algorithm.function | Fiji |
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OutputAlgorithm | | Interface | mpicbg.imglib.algorithm | Fiji |
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PhaseCorrelation | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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PhaseCorrelationPeak | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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PickImagePeaks | This class implements a very simple peak-picker, with optional ellipsoidal peak suppression. | Class | mpicbg.imglib.algorithm.math | Fiji |
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Precision | | Class | mpicbg.imglib.algorithm | Fiji |
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Precision .PrecisionInteger | | Class | mpicbg.imglib.algorithm.Precision | Fiji |
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Precision .PrecisionReal | | Class | mpicbg.imglib.algorithm.Precision | Fiji |
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RadiusNeighborSearch | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
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RealHistogramBinFactory | | Class | mpicbg.imglib.algorithm.histogram.arbitrary | Fiji |
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RegionalExtremaFactory | Provides a way for the user to automatically create the appropriate RegionalMaximaFinder class without having to deal with the dimensionality. | Class | mpicbg.imglib.algorithm.extremafinder | Fiji |
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RegionalExtremaFinder | Provides a quick algorithm for finding regional maxima in 2- or 3-dimensional images. | Interface | mpicbg.imglib.algorithm.extremafinder | Fiji |
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RegionalExtremaFinder2D | * This class finds the regional extrema of a 3 dimensional image. | Class | mpicbg.imglib.algorithm.extremafinder | Fiji |
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RegionalExtremaFinder3D | This class finds the regional extrema of a 3 dimensional image. | Class | mpicbg.imglib.algorithm.extremafinder | Fiji |
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ROIAlgorithm | ROIAlgorithm implements a framework against which to build operations of one image against another, like convolution, cross-correlation, or morphological operations. | Class | mpicbg.imglib.algorithm | Fiji |
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ScaleAreaAveraging2d | | Class | mpicbg.imglib.algorithm.integral | Fiji |
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ScaleSpace | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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SimpleNode | | Class | mpicbg.imglib.algorithm.kdtree.node | Fiji |
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StatisticalOperation | StatisticalOperation provides the framework to create Order Statistic operations. | Class | mpicbg.imglib.algorithm.roi | Fiji |
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StatisticalOperation .StatisticsCollectionStrategy | StatisticalOperation. | Interface | mpicbg.imglib.algorithm.roi.StatisticalOperation | Fiji |
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StructuringElement | | Class | mpicbg.imglib.algorithm.roi | Fiji |
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SubpixelLocalization | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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SubtractNorm | | Class | mpicbg.imglib.algorithm.function | Fiji |
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SubtractNormReal | | Class | mpicbg.imglib.algorithm.function | Fiji |
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SubtractReal | | Class | mpicbg.imglib.algorithm.function | Fiji |
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TestKDTree | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
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Watershed | Watershed algorithms. | Class | mpicbg.imglib.algorithm.labeling | Fiji |
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Watershed .PixelIntensity | | Class | mpicbg.imglib.algorithm.labeling.Watershed | Fiji |