Name | Description | Type | Package | Framework |
CoreSuperimposer | Superimposes the core aligned residues of every structure in a MultipleAlignment onto a reference structure. | Class | org.biojava.nbio.structure.align.multiple.util | BioJava |
MultipleAlignmentDisplay | Utility functions to generalize the visualization of MultipleAlignments in molecular viewers. | Class | org.biojava.nbio.structure.align.multiple.util | BioJava |
MultipleAlignmentScorer | Utility class for calculating common scores of MultipleAlignments. | Class | org.biojava.nbio.structure.align.multiple.util | BioJava |
MultipleAlignmentTools | Utility functions for working with MultipleAlignment. | Class | org.biojava.nbio.structure.align.multiple.util | BioJava |
MultipleAlignmentWriter | This class contains functions for the conversion of MultipleAlignment to various String outputs. | Class | org.biojava.nbio.structure.align.multiple.util | BioJava |
MultipleSuperimposer | Interface for Multiple Alignment superposition algorithms. | Interface | org.biojava.nbio.structure.align.multiple.util | BioJava |
ReferenceSuperimposer | Superimposes each structure in a MultipleAlignment onto a reference Performs a global superposition of the MultipleAlignment in case | Class | org.biojava.nbio.structure.align.multiple.util | BioJava |