Name | Description | Type | Package | Framework |
AssignmentXMLSerializer | Class | org.biojava.nbio.structure.domain | BioJava | |
ClusterDomains | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
Cut | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
CutDomain | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
CutSites | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
CutValues | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
Domain | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
DomainProvider | Interface | org.biojava.nbio.structure.domain | BioJava | |
DomainProviderFactory | Class | org.biojava.nbio.structure.domain | BioJava | |
GetDistanceMatrix | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
LocalProteinDomainParser | Protein Domain Parser is a an algorithm that attempts at assigning domains for 3D protein structures. | Class | org.biojava.nbio.structure.domain | BioJava |
PDBDomainProvider | Class to fetch domains through the RCSB's REST API. | Class | org.biojava.nbio.structure.domain | BioJava |
PDPDistanceMatrix | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
PDPDomain | Class | org.biojava.nbio.structure.domain | BioJava | |
PDPParameters | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
PDPProvider | Decomposes a structure into representative PDP domains. | Interface | org.biojava.nbio.structure.domain | BioJava |
RemoteDomainProvider | A DomainProvider that uses a mixture of SCOP and PDP domains. | Class | org.biojava.nbio.structure.domain | BioJava |
RemotePDPProvider | A class that provided PDP assignments that are loaded from a remote web serverAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.domain | BioJava |
Segment | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
SegmentComparator | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |
SerializableCache | A class that provides all that is necessary to create a Serializable CacheSince:3. | Class | org.biojava.nbio.structure.domain | BioJava |
ShortSegmentRemover | Class | org.biojava.nbio.structure.domain.pdp | BioJava | |