Name | Description | Type | Package | Framework |
AgScore | Class | org.biojava.nbio.survival.cox.stats | BioJava | |
ChiSq | Class | org.biojava.nbio.survival.cox.stats | BioJava | |
Cholesky2 | Class | org.biojava.nbio.survival.cox.stats | BioJava | |
Chsolve2 | Class | org.biojava.nbio.survival.cox.stats | BioJava | |
CoxCC | Class | org.biojava.nbio.survival.cox | BioJava | |
CoxCoefficient | Class | org.biojava.nbio.survival.cox | BioJava | |
CoxComparatorInterface | Interface | org.biojava.nbio.survival.cox.comparators | BioJava | |
CoxHelper | The CoxHelper class is provided to start with a tab delimited file in a similar process in R and return the results as a CoxInfo class. | Class | org.biojava.nbio.survival.cox | BioJava |
CoxInfo | Holds the results of a cox analysis where calling dump(), toString() will give an output similar to RAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
CoxMart | Class | org.biojava.nbio.survival.cox | BioJava | |
CoxMethod | Class | org.biojava.nbio.survival.cox | BioJava | |
CoxR | This is a port of the R survival code used for doing Cox Regression. | Class | org.biojava.nbio.survival.cox | BioJava |
CoxScore | Class | org.biojava.nbio.survival.cox | BioJava | |
CoxVariables | Class | org.biojava.nbio.survival.cox | BioJava | |
CoxVariablesOverallModelFitComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
CoxVariablesVariableComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
Matrix | *********************************************************************** Compilation: javac Matrix. | Class | org.biojava.nbio.survival.cox.matrix | BioJava |
MeanModelComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
ResidualsCoxph | Class | org.biojava.nbio.survival.cox | BioJava | |
ResidualsCoxph .Type | Class | org.biojava.nbio.survival.cox | BioJava | |
RiskInfo | Class | org.biojava.nbio.survival.cox | BioJava | |
StdArrayIO | Standard array IO. | Class | org.biojava.nbio.survival.cox.matrix | BioJava |
StrataInfo | Information needed to represent a survival curveAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
SurvFitInfo | Contains info for graphing km figuresAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
SurvivalInfo | Data class to represent a single sample where time and event/censor status is required Additionally each variable and data associated with that variable. | Class | org.biojava.nbio.survival.cox | BioJava |
SurvivalInfoComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
SurvivalInfoHelper | Used to work with SurvivalInfoAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
SurvivalInfoIndex | Not used and probably should be deletedAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
SurvivalInfoValueComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
WaldTest | Class | org.biojava.nbio.survival.cox | BioJava | |
WaldTestInfo | Class | org.biojava.nbio.survival.cox | BioJava | |