Name | Description | Type | Package | Framework |
AdductionLPMechanism | This mechanism adduct together two fragments. | Class | org.openscience.cdk.reaction.mechanism | CDK |
AdductionPBMechanism | This mechanism adduct together two fragments due to a double bond. | Class | org.openscience.cdk.reaction.mechanism | CDK |
AdductionProtonLPReaction | IReactionProcess which produces a protonation. | Class | org.openscience.cdk.reaction.type | CDK |
AdductionProtonPBReaction | IReactionProcess which produces a protonation to double bond. | Class | org.openscience.cdk.reaction.type | CDK |
AdductionSodiumLPReaction | IReactionProcess which produces an adduction of the Sodium. | Class | org.openscience.cdk.reaction.type | CDK |
CarbonylEliminationReaction | IReactionProcess which participate mass spectrum process. | Class | org.openscience.cdk.reaction.type | CDK |
ElectronImpactNBEReaction | IReactionProcess which make an electron impact for for Non-Bonding Electron Lost. | Class | org.openscience.cdk.reaction.type | CDK |
ElectronImpactPDBReaction | IReactionProcess which make an electron impact for pi-Bond Dissociation. | Class | org.openscience.cdk.reaction.type | CDK |
ElectronImpactSDBReaction | IReactionProcess which make an electron impact for Sigma Bond Dissociation. | Class | org.openscience.cdk.reaction.type | CDK |
HeterolyticCleavageMechanism | This mechanism displaces the chemical bond to an Atom. | Class | org.openscience.cdk.reaction.mechanism | CDK |
HeterolyticCleavagePBReaction | IReactionProcess which a bond is broken displacing the electron to one of the atoms. | Class | org.openscience.cdk.reaction.type | CDK |
HeterolyticCleavageSBReaction | IReactionProcess which a bond is broken displacing the electron to one of the atoms. | Class | org.openscience.cdk.reaction.type | CDK |
HomolyticCleavageMechanism | This mechanism breaks the chemical bond between atoms. | Class | org.openscience.cdk.reaction.mechanism | CDK |
HomolyticCleavageReaction | IReactionProcess which breaks the bond homogeneously leading to radical ions. | Class | org.openscience.cdk.reaction.type | CDK |
HyperconjugationReaction | HyperconjugationReaction is the stabilizing interaction that results from the interaction of the electrons in a s-bond (for our case only C-H) | Class | org.openscience.cdk.reaction.type | CDK |
IParameterReact | Interface for classes that generate parameters used in reactions. | Interface | org.openscience.cdk.reaction.type.parameters | CDK |
IReactionMechanism | Classes that implement this interface are reaction mechanisms. | Interface | org.openscience.cdk.reaction | CDK |
IReactionProcess | Classes that implement this interface are Reactions types. | Interface | org.openscience.cdk.reaction | CDK |
ParameterReact | Class which defines the allowed parameters of a reaction. | Class | org.openscience.cdk.reaction.type.parameters | CDK |
PiBondingMovementReaction | IReactionProcess which tries to reproduce the delocalization of electrons which are unsaturated bonds from conjugated rings. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalChargeSiteInitiationHReaction | IReactionProcess which participate mass spectrum process. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalChargeSiteInitiationReaction | IReactionProcess which participate mass spectrum process. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteHrAlphaReaction | This reaction could be represented as [A*]-(C)_2-C3[H] => A([H])-(C_2)-[C3*]. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteHrBetaReaction | This reaction could be represented as [A*]-(C)_3-C4[H] => A([H])-(C_3)-[C4*]. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteHrDeltaReaction | This reaction could be represented as [A*]-(C)_4-C5[H] => A([H])-(C_4)-[C5*]. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteHrGammaReaction | This reaction could be represented as [A*]-C1-C2-C3[H] => A([H])-C1-C2-[C3*]. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteInitiationHReaction | IReactionProcess which participate mass spectrum process. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteInitiationReaction | IReactionProcess which participate mass spectrum process. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteIonizationMechanism | This mechanism extracts an atom because of the stabilization of a radical. | Class | org.openscience.cdk.reaction.mechanism | CDK |
RadicalSiteRearrangementMechanism | This mechanism displaces an Atom or substructure (R) from one position to an other. | Class | org.openscience.cdk.reaction.mechanism | CDK |
RadicalSiteRrAlphaReaction | This reaction could be represented as [A*]-(C)_2-C3[R] => A([RH])-(C_2)-[C3*]. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteRrBetaReaction | This reaction could be represented as [A*]-(C)_3-C4[R] => A([R])-(C_3)-[C4*]. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteRrDeltaReaction | This reaction could be represented as [A*]-(C)_4-C5[R] => A([R])-(C_4)-[C5*]. | Class | org.openscience.cdk.reaction.type | CDK |
RadicalSiteRrGammaReaction | This reaction could be represented as [A*]-(C)_5-C6[R] => A([R])-(C_5)-[C6*]. | Class | org.openscience.cdk.reaction.type | CDK |
Reaction | Represents the idea of a chemical reaction. | Class | org.openscience.cdk | CDK |
ReactionChain | Classes that extends the definition of reaction to a chain reaction. | Class | org.openscience.cdk.reaction | CDK |
ReactionEngine | The base class for all chemical reactions objects in this cdk. | Class | org.openscience.cdk.reaction | CDK |
ReactionScheme | Classes that extends the definition of reaction to a scheme. | Class | org.openscience.cdk | CDK |
ReactionSet | A set of reactions, for example those taking part in a reaction. | Class | org.openscience.cdk | CDK |
ReactionSpecification | Class that is used to distribute reactions specifications. | Class | org.openscience.cdk.reaction | CDK |
RearrangementAnionReaction | IReactionProcess which participate in movement resonance. | Class | org.openscience.cdk.reaction.type | CDK |
RearrangementCationReaction | IReactionProcess which participate in movement resonance. | Class | org.openscience.cdk.reaction.type | CDK |
RearrangementChargeMechanism | This mechanism displaces the charge(radical, charge + or charge -) because of a double bond which is associated. | Class | org.openscience.cdk.reaction.mechanism | CDK |
RearrangementLonePairReaction | IReactionProcess which participate in movement resonance. | Class | org.openscience.cdk.reaction.type | CDK |
RearrangementRadicalReaction | IReactionProcess which participate in movement resonance. | Class | org.openscience.cdk.reaction.type | CDK |
RemovingSEofBMechanism | This mechanism extracts a single electron from a bonding orbital which located in an bond. | Class | org.openscience.cdk.reaction.mechanism | CDK |
RemovingSEofNBMechanism | This mechanism extracts a single electron from a non-bonding orbital which located in a ILonePair container. | Class | org.openscience.cdk.reaction.mechanism | CDK |
SetReactionCenter | Class extension of ParameterReact class which defines if a reaction is set already the reaction centerAuthor:miguelrojasch | Class | org.openscience.cdk.reaction.type.parameters | CDK |
SharingAnionReaction | IReactionProcess which participate in movement resonance. | Class | org.openscience.cdk.reaction.type | CDK |
SharingChargeDBReaction | IReactionProcess which participate in movement resonance. | Class | org.openscience.cdk.reaction.type | CDK |
SharingChargeSBReaction | IReactionProcess which participate in movement resonance. | Class | org.openscience.cdk.reaction.type | CDK |
SharingElectronMechanism | This mechanism displaces the charge (lonePair) because of deficiency of charge. | Class | org.openscience.cdk.reaction.mechanism | CDK |
SharingLonePairReaction | IReactionProcess which participate in movement resonance. | Class | org.openscience.cdk.reaction.type | CDK |
TautomerizationMechanism | This mechanism produces the tautomerization chemical reaction between two tautomers. | Class | org.openscience.cdk.reaction.mechanism | CDK |
TautomerizationReaction | IReactionProcess which produces a tautomerization chemical reaction. | Class | org.openscience.cdk.reaction.type | CDK |