Name | Description | Type | Package | Framework |
AbstractImgFactoryImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
AbstractImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
Apply_Transformation | Class | spim.fiji.plugin | Fiji | |
ApplyParameters | Class | spim.fiji.plugin.apply | Fiji | |
ApplyTransformationPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
BDVPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
BigDataViewerTransformationWindow | Class | spim.fiji.plugin.apply | Fiji | |
BoundingBox | Class | spim.fiji.spimdata.boundingbox | Fiji | |
BoundingBoxes | Class | spim.fiji.spimdata.boundingbox | Fiji | |
BoundingBoxPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
CalibratedImg | Class | spim.fiji.spimdata.imgloaders | Fiji | |
Calibration | Class | spim.fiji.spimdata.imgloaders | Fiji | |
CorrespondingInterestPoints | Defines a pair of corresponding interest pointsAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
Data_Explorer | Class | spim.fiji.plugin | Fiji | |
Define_Bounding_Box | Class | spim.fiji.plugin | Fiji | |
Define_Multi_View_Dataset | Class | spim.fiji.plugin | Fiji | |
DetectInterestPointsPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
DHM | Class | spim.fiji.datasetmanager | Fiji | |
DHMImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
DHMMetaData | Class | spim.fiji.datasetmanager | Fiji | |
DifferenceOf | Class | spim.fiji.plugin.interestpointdetection | Fiji | |
DifferenceOfGaussian | Class | spim.fiji.plugin.interestpointdetection | Fiji | |
DifferenceOfMean | Class | spim.fiji.plugin.interestpointdetection | Fiji | |
Display_View | Class | spim.fiji.plugin | Fiji | |
DisplayViewPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
Duplicate_Transformation | Class | spim.fiji.plugin | Fiji | |
Fusion | Class | spim.fiji.plugin.fusion | Fiji | |
FusionPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
Generic_Resave_HDF5 | Class | spim.fiji.plugin.resave | Fiji | |
Generic_Resave_HDF5 .Parameters | Class | spim.fiji.plugin.resave.Generic_Resave_HDF5 | Fiji | |
GenericDialogAppender | Interface | spim.fiji.plugin.util | Fiji | |
GenericLoadParseQueryXML | Interface for interactive parsing of spimdata XMLsAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.plugin.queryXML | Fiji |
GUIHelper | Class | spim.fiji.plugin.util | Fiji | |
Histogram | Class | spim.fiji.plugin.thinout | Fiji | |
Image_Fusion | Class | spim.fiji.plugin | Fiji | |
ImgLib2Temp | Class | spim.fiji | Fiji | |
ImgLib2Temp .Pair | Interface | spim.fiji.ImgLib2Temp | Fiji | |
ImgLib2Temp .ValuePair | Class | spim.fiji.ImgLib2Temp | Fiji | |
Interactive_Remove_Detections | Class | spim.fiji.plugin | Fiji | |
InteractiveProjections | Class | spim.fiji.plugin.removedetections | Fiji | |
Interest_Point_Detection | Plugin to detect interest points, store them on disk, and link them into the XML Different plugins to detect interest points are supported, needs to implement the | Class | spim.fiji.plugin | Fiji |
Interest_Point_Registration | Class | spim.fiji.plugin | Fiji | |
Interest_Point_Registration .RegistrationType | Class | spim.fiji.plugin.Interest_Point_Registration | Fiji | |
InterestPoint | Single interest point, extends mpicbg Point by an idAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
InterestPointDetection | Class | spim.fiji.plugin.interestpointdetection | Fiji | |
InterestPointExplorer | Class | spim.fiji.spimdata.explorer.interestpoint | Fiji | |
InterestPointExplorerPanel | Class | spim.fiji.spimdata.explorer.interestpoint | Fiji | |
InterestPointExplorerPanel .MyRenderer | Class | spim.fiji.spimdata.explorer.interestpoint.InterestPointExplorerPanel | Fiji | |
InterestPointList | A list of interest points for a certain label, can save and load from textfile as specified in the XMLAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
InterestPointOverlay | Class | spim.fiji.spimdata.explorer.interestpoint | Fiji | |
InterestPointOverlay .InterestPointSource | Interface | spim.fiji.spimdata.explorer.interestpoint.InterestPointOverlay | Fiji | |
InterestPointRegistration | Class | spim.fiji.plugin.interestpointregistration | Fiji | |
InterestPointsExplorerPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
InterestPointTableModel | Class | spim.fiji.spimdata.explorer.interestpoint | Fiji | |
LabelPopUp | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
LegacyDHMImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
LegacyLightSheetZ1ImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
LegacyMicroManagerImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
LegacyStackImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
LegacyStackImgLoaderIJ | Class | spim.fiji.spimdata.imgloaders | Fiji | |
LegacyStackImgLoaderLOCI | Class | spim.fiji.spimdata.imgloaders | Fiji | |
LightSheetZ1 | Class | spim.fiji.datasetmanager | Fiji | |
LightSheetZ1ImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
LightSheetZ1MetaData | Class | spim.fiji.datasetmanager | Fiji | |
LoadParseQueryXML | Class | spim.fiji.plugin.queryXML | Fiji | |
Max_Project | Class | spim.fiji.plugin | Fiji | |
MaxProjectPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
Merge_Cluster_Jobs | Class | spim.fiji.plugin | Fiji | |
MergeClusterJobs | Class | spim.fiji.plugin.cluster | Fiji | |
MicroManager | Class | spim.fiji.datasetmanager | Fiji | |
MicroManagerImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
ModelLink | Class | spim.fiji.plugin.apply | Fiji | |
MouseListenerValue | Class | spim.fiji.plugin.thinout | Fiji | |
MultipageTiffReader | Adapted version from the MicroManager codebase that supports the new diSPIM related tags and multiple-file reading. | Class | spim.fiji.spimdata.imgloaders | Fiji |
MultiViewDatasetDefinition | Interface | spim.fiji.datasetmanager | Fiji | |
MyMultiLineLabel | Class | spim.fiji.plugin.util | Fiji | |
NamePattern | Class | spim.fiji.spimdata | Fiji | |
NumberUtils | Class | spim.fiji.spimdata.imgloaders | Fiji | |
OpenImg | Class | spim.fiji.plugin.util | Fiji | |
PluginHelper | Class | spim.fiji.plugin.resave | Fiji | |
PluginHelper .ChooseXmlFileListener | Class | spim.fiji.plugin.resave.PluginHelper | Fiji | |
ProgressWriterIJ | Class | spim.fiji.plugin.resave | Fiji | |
RegisterInterestPointsPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
RegistrationExplorer | Class | spim.fiji.spimdata.explorer.registration | Fiji | |
RegistrationExplorerPanel | Class | spim.fiji.spimdata.explorer.registration | Fiji | |
RegistrationExplorerPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
RegistrationTableModel | Class | spim.fiji.spimdata.explorer.registration | Fiji | |
RemoveDetectionsPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
RemoveTransformationPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
ReorientSamplePopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
Resave_HDF5 | Class | spim.fiji.plugin.resave | Fiji | |
Resave_TIFF | Class | spim.fiji.plugin.resave | Fiji | |
Resave_TIFF .Parameters | Class | spim.fiji.plugin.resave.Resave_TIFF | Fiji | |
ResavePopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
SelectedViewDescriptionListener | Interface | spim.fiji.spimdata.explorer | Fiji | |
Separator | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
SimpleInfoBox | Class | spim.fiji.spimdata.explorer | Fiji | |
Specify_Calibration | Class | spim.fiji.plugin | Fiji | |
Specify_Calibration .Cal | Class | spim.fiji.plugin.Specify_Calibration | Fiji | |
SpecifyCalibrationPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
SpimData2 | Class | spim.fiji.spimdata | Fiji | |
SpimDataExample | Class | spim.fiji.spimdata | Fiji | |
StackImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
StackImgLoaderIJ | Class | spim.fiji.spimdata.imgloaders | Fiji | |
StackImgLoaderLOCI | Class | spim.fiji.spimdata.imgloaders | Fiji | |
StackList | Class | spim.fiji.datasetmanager | Fiji | |
StackListImageJ | Class | spim.fiji.datasetmanager | Fiji | |
StackListLOCI | Class | spim.fiji.datasetmanager | Fiji | |
ThinOut_Detections | Class | spim.fiji.plugin | Fiji | |
Toggle_Cluster_Options | Class | spim.fiji.plugin | Fiji | |
ViewExplorerSetable | Interface | spim.fiji.spimdata.explorer.popup | Fiji | |
ViewInterestPointLists | Maps from a String label to a list of interest points for a specific viewidAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
ViewInterestPoints | A class that organizes all interest point detections of all ViewDescriptions (which extend ViewId)Author:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
ViewSetupExplorer | Class | spim.fiji.spimdata.explorer | Fiji | |
ViewSetupExplorerInfoBox | Class | spim.fiji.spimdata.explorer | Fiji | |
ViewSetupExplorerPanel | Class | spim.fiji.spimdata.explorer | Fiji | |
ViewSetupTableModel | Class | spim.fiji.spimdata.explorer | Fiji | |
ViewSetupUtils | Class | spim.fiji.spimdata | Fiji | |
Visualize_Detections | Class | spim.fiji.plugin | Fiji | |
Visualize_Detections .Params | Class | spim.fiji.plugin.Visualize_Detections | Fiji | |
VisualizeDetectionsPopup | Class | spim.fiji.spimdata.explorer.popup | Fiji | |
XmlIoBoundingBoxes | Class | spim.fiji.spimdata.boundingbox | Fiji | |
XmlIoDHMImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
XmlIoLightSheetZ1ImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
XmlIoMicroManagerImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
XmlIoSpimData2 | Class | spim.fiji.spimdata | Fiji | |
XmlIoStackImgLoader | Class | spim.fiji.spimdata.imgloaders | Fiji | |
XmlIoStackImgLoaderIJ | Class | spim.fiji.spimdata.imgloaders | Fiji | |
XmlIoStackImgLoaderLOCI | Class | spim.fiji.spimdata.imgloaders | Fiji | |
XmlIoViewInterestPoints | Class | spim.fiji.spimdata.interestpoints | Fiji | |
XmlKeysBoundingBox | Class | spim.fiji.spimdata.boundingbox | Fiji | |
XmlKeysInterestPoints | Class | spim.fiji.spimdata.interestpoints | Fiji | |