Share

Search Java Classes and Packages

Search Java Frameworks and Libraries

255581 classes and counting ...
Search Tips Index Status



# Classes and Interfaces in #CytoScape - 956 results found.
NameDescriptionTypePackageFrameworkJavaDoc
AboutDialogAbout page for web service clients or other plugins.Classcytoscape.util.swingCytoScapejavadoc
AbsClassorg.cytoscape.equations.builtinsCytoScapejavadoc
AbstractCalculatorClasscytoscape.visual.calculatorsCytoScapejavadoc
AbstractCellEditorClasscytoscape.util.swingCytoScapejavadoc
AbstractCommandHandlerThis abstract class provides a convenient (but not necessary) base class for writing CyCommandHandlers.Classcytoscape.commandCytoScapejavadoc
AbstractDCustomGraphicsClasscytoscape.visual.customgraphic.implCytoScapejavadoc
AbstractFunctionClassorg.cytoscape.equationsCytoScapejavadoc
AbstractGraphReaderClasscytoscape.data.readersCytoScapejavadoc
AbstractLayoutThe AbstractLayout provides nice starting point for Layouts written for Cytoscape.Classcytoscape.layoutCytoScapejavadoc
AbstractMappingClasscytoscape.visual.mappingsCytoScapejavadoc
AbstractParserControlClass to inherit from so when in future when new controls are added clients will no have to implement them.Classorg.apache.commons.cli.avalonCytoScapejavadoc
AbstractScalerUsed to scale a list of values to [a,b]Constructor SummaryAbstractScaler()Classcytoscape.utilCytoScapejavadoc
AbstractTreeTableModelClasscytoscape.util.swingCytoScapejavadoc
AbstractVisualPropertyClasscytoscape.visual.propertiesCytoScapejavadoc
ACosClassorg.cytoscape.equations.builtinsCytoScapejavadoc
AddRemoveTestClassfing.model.testCytoScapejavadoc
AliasesSimpler version of Thesaurus.Classcytoscape.data.synonymsCytoScapejavadoc
AliasTypeenum AliasTypeextends Enum Aliases are always belongs to one of these types.Classcytoscape.data.synonymsCytoScapejavadoc
AlignHorizontalActionSee Also:Serialized FormFields inherited from class javax.Classcytoscape.actionsCytoScapejavadoc
AlignVerticalActionSee Also:Serialized FormFields inherited from class javax.Classcytoscape.actionsCytoScapejavadoc
AllGraphPerspectiveMethodsTestClassfing.model.testCytoScapejavadoc
AllRootGraphMethodsTestClassfing.model.testCytoScapejavadoc
AlphabeticalSelectionActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
AlreadySelectedExceptionThrown when more than one option in an option groupAuthor:John Keyes ( john at integralsource.Classorg.apache.commons.cliCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

AndClassorg.cytoscape.equations.builtinsCytoScapejavadoc
AnimatedLayoutActionSee Also:Serialized FormFields inherited from class javax.Classcytoscape.actionsCytoScapejavadoc
AnnotationStore any number of classifications for named entities, each of which is from a specified species, and where the classifications are all terms from anClasscytoscape.data.annotationCytoScapejavadoc
AnnotationDescriptionDistinguish among different ontologies, by curator and type.Classcytoscape.data.annotationCytoScapejavadoc
AnnotationFlatFileReaderClasscytoscape.data.annotation.readersCytoScapejavadoc
AnnotationXmlReaderClasscytoscape.data.annotation.readersCytoScapejavadoc
AppearanceA class that holds the appearance information for NodeViews and EdgeViews.Classcytoscape.visualCytoScapejavadoc
ApplyLayoutActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ApplyVisualStyleActionApply Visual Style for a set of selected networks.Classcytoscape.actionsCytoScapejavadoc
ArbitraryGraphicsCanvasThis class extends cytoscape.Classding.viewCytoScapejavadoc
ArgDescriptorA class describing a function argument.Classorg.cytoscape.equationsCytoScapejavadoc
ArgTypeenum ArgTypeextends EnumAn enum specifying a function argument type.Classorg.cytoscape.equationsCytoScapejavadoc
ARowanBugTestClassfing.model.testCytoScapejavadoc
ArrangeActionClasscytoscape.actionsCytoScapejavadoc
ArrayIntEnumeratorA utility class which conveniently converts an array of integers into an IntEnumerator (an enumeration of integers).Classcytoscape.util.intrCytoScapejavadoc
ArrayIntIteratorA utility class which conveniently converts an array of integers into an IntIterator (an iteration of integers).Classcytoscape.util.intrCytoScapejavadoc
ArrayTestMethod1Classcytoscape.geom.rtree.testCytoScapejavadoc
ArrayTestMethod2Classcytoscape.geom.rtree.testCytoScapejavadoc
ArrayTestMethod3Classcytoscape.geom.rtree.testCytoScapejavadoc
ArrayTestMethod4Classcytoscape.geom.rtree.testCytoScapejavadoc
ArrowInterfacecytoscape.render.immed.arrowCytoScapejavadoc
ArrowThis class is a replacement for the yFiles Arrow class.Classcytoscape.visualCytoScapejavadoc
ArrowheadArrowClasscytoscape.render.immed.arrowCytoScapejavadoc
ArrowIconIcon for arrow shape.Classcytoscape.visual.ui.iconCytoScapejavadoc
ArrowParserParses a String into a yFiles Arrow object.Classcytoscape.visual.parsersCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

ArrowShapeenum ArrowShapeextends EnumDefines arrow shapes.Classcytoscape.visualCytoScapejavadoc
ArrowShapeParserClasscytoscape.visual.parsersCytoScapejavadoc
ASinClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ATan2Classorg.cytoscape.equations.builtinsCytoScapejavadoc
AttribTopoGraphNodeRepresents a node in a topological graph.Classcytoscape.dataCytoScapejavadoc
AttributeJava class for anonymous complex type.Classcytoscape.bookmarksCytoScapejavadoc
AttributeFilterInterface for defining CyEdge-based filters used for determining which Edges should be used for a particular operation, such asInterfacecytoscape.dataCytoScapejavadoc
AttributeImportPanelGeneral GUI component for importing attributes.Classcytoscape.util.swingCytoScapejavadoc
AttributeImportQueryClasscytoscape.data.webserviceCytoScapejavadoc
AttributeSaverDialogDialog box to save various attributes.Classcytoscape.dataCytoScapejavadoc
AttributeValueVisitorInterface for defining attribute value visitors--operations to perform on each attribute value using CyAttributesUtils.Interfacecytoscape.dataCytoScapejavadoc
AverageClassorg.cytoscape.equations.builtinsCytoScapejavadoc
BackgroundColorActionPrompts User for New Background Color.Classcytoscape.actionsCytoScapejavadoc
BackwardSlashStrokeNested Class SummaryNested classes/interfaces inherited from class cytoscape.Classcytoscape.visual.strokesCytoScapejavadoc
BasicCalculatorClasscytoscape.visual.calculatorsCytoScapejavadoc
BasicGraphViewHandlerA basic GraphViewHandler that simply reflects GraphPerspective changes on a given GraphViewClasscytoscape.viewCytoScapejavadoc
BasicParserThe class BasicParser provides a very simple implementation of the flatten method.Classorg.apache.commons.cliCytoScapejavadoc
BasicQuietRTreeTestClasscytoscape.geom.rtree.testCytoScapejavadoc
BelowAndAbovePanelDrawing and updating below & above values in Gradient Editor.Classcytoscape.visual.ui.editors.continuousCytoScapejavadoc
BendA class that encapsulates the representation of the bend used for a particular EdgeView.Interfaceginy.viewCytoScapejavadoc
BendSelectedEdgesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
BiModalJSplitPaneThe BiModalJSplitPane class extends JSplitPane to provide two modes: MODE_SHOW_SPLIT: The split in the split pane appears as it normallyClasscytoscape.view.cytopanelsCytoScapejavadoc
BinOpNodeA node in the parse tree representing a binary operator.Classorg.cytoscape.equations.parse_treeCytoScapejavadoc
BioDataServerClasscytoscape.data.serversCytoScapejavadoc
BioDataServerInterfaceInterfacecytoscape.data.serversCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

BioDataServerRmiThis is the actual class which implements BioDataServer Methods.Classcytoscape.data.serversCytoScapejavadoc
BioDataServerUtilClasscytoscape.utilCytoScapejavadoc
BiologicalProcessAnnotationReaderThe purpose of this class is to convert a 'gene_association.Classcytoscape.cruft.oboCytoScapejavadoc
BiologicalProcessAnnotationTesterClasscytoscape.cruft.obo.testCytoScapejavadoc
BirdsEyeViewClassding.viewCytoScapejavadoc
BirdsEyeViewActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
BitmapExporterBitmap exporter by the ImageIO class.Classcytoscape.util.exportCytoScapejavadoc
BitSetPerformanceClasscytoscape.util.intr.testCytoScapejavadoc
BListClassorg.cytoscape.equations.builtinsCytoScapejavadoc
BookmarkActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
BookmarkDialogClasscytoscape.dialogs.preferencesCytoScapejavadoc
BookmarkReaderClasscytoscape.data.readersCytoScapejavadoc
BookmarksJava class for anonymous complex type.Classcytoscape.bookmarksCytoScapejavadoc
BookmarksUtilUtility methods for getting entries in the bookmark object.Classcytoscape.utilCytoScapejavadoc
BooleanConstantNodeA node in the parse tree representing an integer constant.Classorg.cytoscape.equations.parse_treeCytoScapejavadoc
BooleanListClassorg.cytoscape.equationsCytoScapejavadoc
BooleanParserParses a String into a Boolean object.Classcytoscape.visual.parsersCytoScapejavadoc
BoundaryRangeValuesThis class defines a data object representing the range values associated with a particular domain value, called a boundary value.Classcytoscape.visual.mappingsCytoScapejavadoc
Bug646TestClassfing.model.testCytoScapejavadoc
C2CMappingEditorContinuous-Continuous mapping editor.Classcytoscape.visual.ui.editors.continuousCytoScapejavadoc
C2DMappingEditorContinuous Mapping editor for discrete values, such as Font, Shape, Label Position, etc.Classcytoscape.visual.ui.editors.continuousCytoScapejavadoc
CalculatorInterfacecytoscape.visual.calculatorsCytoScapejavadoc
CalculatorCatalogStores various types of Calculators from data attributes to an attribute of a specified type.Classcytoscape.visualCytoScapejavadoc
CalculatorCatalogFactoryThis class provides a static method for reading a CalculatorCatalog object from file, using parameters specified in a supplied CytoscapeConfig.Classcytoscape.visualCytoScapejavadoc
CalculatorFactoryThis class provides static factory methods for constructing instances of Calculators as specified by arguments and static methods for getting namesClasscytoscape.visual.calculatorsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

CalculatorIOThis class defines static methods for reading calculator definitions from a properties object and installing them into a CalculatorCatalog, and forClasscytoscape.visualCytoScapejavadoc
CategoryJava class for anonymous complex type.Classcytoscape.bookmarksCytoScapejavadoc
Categoryenum Categoryextends EnumEnum Constant SummaryANALYSISClasscytoscape.pluginCytoScapejavadoc
CellEditorFactoryClasscytoscape.visual.uiCytoScapejavadoc
CellHeightManagerClasscytoscape.visual.uiCytoScapejavadoc
CellRendererFactoryClasscytoscape.visual.uiCytoScapejavadoc
CellularComponentAnnotationReaderThe purpose of this class is to convert a 'gene_association.Classcytoscape.cruft.oboCytoScapejavadoc
CellularComponentAnnotationTesterClasscytoscape.cruft.obo.testCytoScapejavadoc
CheckBoxFileChooserClasscytoscape.actionsCytoScapejavadoc
CheckBoxJList This class is based on CheckBoxJList: from SWING HACKS ISBN: 0-596-00907-0Classcytoscape.util.swingCytoScapejavadoc
ChildJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
CLArgsParserParser for command line arguments.Classorg.apache.commons.cli.avalonCytoScapejavadoc
clearClasscytoscape.data.serversCytoScapejavadoc
CloneGraphInNewWindowActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
CLOptionBasic class describing an instance of option.Classorg.apache.commons.cli.avalonCytoScapejavadoc
CLOptionDescriptorBasic class describing an type of option.Classorg.apache.commons.cli.avalonCytoScapejavadoc
CLUtilCLUtil offers basic utility operations for use both internal and external to package.Classorg.apache.commons.cli.avalonCytoScapejavadoc
CodeAndSourceLocationA node in the parse tree representing a binary operator.Classorg.cytoscape.equationsCytoScapejavadoc
ColorConverterClasscytoscape.visual.converterCytoScapejavadoc
ColorPaintFactoryClasscytoscape.visual.customgraphic.paintCytoScapejavadoc
ColorParserParses a String into a Color object.Classcytoscape.visual.parsersCytoScapejavadoc
ColorRangeValueCalculatorClasscytoscape.visual.mappings.rangecalculatorsCytoScapejavadoc
ColorScaleTableClasscytoscape.dialogsCytoScapejavadoc
ColorUtilColor utility class to convert Java color object to string and vice versa.Classcytoscape.utilCytoScapejavadoc
ColumnResizerAutomatically resize column based on the objects in the cell.Classcytoscape.util.swingCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

ColumnTypesenum ColumnTypesextends EnumEnum Constant SummaryEDGESClasscytoscape.viewCytoScapejavadoc
CombinClassorg.cytoscape.equations.builtinsCytoScapejavadoc
CommandLineRepresents list of arguments parsed against a Options descriptor.Classorg.apache.commons.cliCytoScapejavadoc
CommandLineParserA class that implements the CommandLineParser interface can parse a String array according to the Options specifiedInterfaceorg.apache.commons.cliCytoScapejavadoc
ConcatenateClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ConsoleLoggerThe ConsoleLogger is the default log handler for Cytoscape and does nothing much more than issue messages to System.Classcytoscape.loggerCytoScapejavadoc
ContentChangeListenerInterfaceding.viewCytoScapejavadoc
ContiguousArrowStrokeFields inherited from class cytoscape.Classcytoscape.visual.strokesCytoScapejavadoc
ContinuousLegendClasscytoscape.visual.mappings.continuousCytoScapejavadoc
ContinuousMapping class.Classcytoscape.visual.mappingsCytoScapejavadoc
ContinuousMappingEditorPanelAbstract class for all Continuous Mapping Editors.Classcytoscape.visual.ui.editors.continuousCytoScapejavadoc
ContinuousMappingPointEncapsulates a ContinuousMapping Point with a single point value and associated BoundaryRangeValues.Classcytoscape.visual.mappings.continuousCytoScapejavadoc
ContinuousMappingReaderReads in ContinuousMapping Properties.Classcytoscape.visual.mappings.continuousCytoScapejavadoc
ContinuousMappingWriterWrites out ContinuousMapping Properties.Classcytoscape.visual.mappings.continuousCytoScapejavadoc
ContinuousRangeCalculatorCalculates the Range for Continuous Mappers.Classcytoscape.visual.mappings.continuousCytoScapejavadoc
ContinuousTrackRendererClasscytoscape.visual.ui.editors.continuousCytoScapejavadoc
CosClassorg.cytoscape.equations.builtinsCytoScapejavadoc
CoshClassorg.cytoscape.equations.builtinsCytoScapejavadoc
CountClassorg.cytoscape.equations.builtinsCytoScapejavadoc
CountedIteratorA java.Interfacecytoscape.data.attrCytoScapejavadoc
CreateNetworkViewActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
CreditScreenClasscytoscape.utilCytoScapejavadoc
CustomGraphicRepresents all the information needed to define a custom graphic for a given NodeView.Classcytoscape.render.statefulCytoScapejavadoc
CustomGraphicsBrowserDisplay list of images available as custom graphicsAuthor:konoSee Also:Serialized FormClasscytoscape.visual.customgraphic.uiCytoScapejavadoc
CustomGraphicsCellRendererCell renderer for Custom Graphics Browser.Classcytoscape.visual.customgraphic.uiCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

CustomGraphicsCellRendererClasscytoscape.visual.ui.editors.discreteCytoScapejavadoc
CustomGraphicsDetailPanelClasscytoscape.visual.customgraphic.uiCytoScapejavadoc
CustomGraphicsManagerClasscytoscape.visual.customgraphicCytoScapejavadoc
CustomGraphicsManagerDialogMain UI for managing on-memory library of Custom GraphicsAuthor:konoSee Also:Serialized FormClasscytoscape.visual.customgraphic.uiCytoScapejavadoc
CustomGraphicsPositionCalculatorClassding.viewCytoScapejavadoc
CustomGraphicsPropertyInterfacecytoscape.visual.customgraphic.impl.vectorCytoScapejavadoc
CustomGraphicsPropertyImplClasscytoscape.visual.customgraphicCytoScapejavadoc
CustomGraphicsRangeValueCalculatorClasscytoscape.visual.mappings.rangecalculatorsCytoScapejavadoc
CustomGraphicsRangeValueRendererInterfacecytoscape.visual.mappingsCytoScapejavadoc
CustomGraphicsUtilClasscytoscape.visual.customgraphicCytoScapejavadoc
CustomMappingUser-definable visual mapping.Interfacecytoscape.visual.mappingsCytoScapejavadoc
CyAbstractEditA small convenience class that can be used to create new edits.Classcytoscape.util.undoCytoScapejavadoc
CyAttributesCyAttributes provides access to network, node, and edge attributes within Cytoscape.Interfacecytoscape.dataCytoScapejavadoc
CyAttributesImplClasscytoscape.dataCytoScapejavadoc
CyAttributesReaderClasscytoscape.data.readersCytoScapejavadoc
CyAttributesUtilsClasscytoscape.dataCytoScapejavadoc
CyAttributesWriterCyAttributeWriter extracted from AttributeSaverDialog.Classcytoscape.data.writersCytoScapejavadoc
CyCollapsiblePanelThe user-triggered collapsable panel containing the component (trigger) in the titled borderSee Also:Serialized FormClasscytoscape.util.swingCytoScapejavadoc
CyColorCellRendererCyColorCellRenderer.Classcytoscape.visual.ui.editors.discreteCytoScapejavadoc
CyColorChooserThis is an annoying re-implementation of JColorChooser.Classcytoscape.utilCytoScapejavadoc
CyColorPropertyEditorColorPropertyEditor.Classcytoscape.visual.ui.editors.discreteCytoScapejavadoc
CyComboBoxPropertyEditorComboBoxPropertyEditor.Classcytoscape.visual.ui.editors.discreteCytoScapejavadoc
CyCommandExceptionThe CyCommandException is thrown when a CyCommandHandler encounters an exception condition.Classcytoscape.commandCytoScapejavadoc
CyCommandHandlerThe CyCommandHandler interface allows a Cytoscape plugin to make it's functions available to other plugins in a loosely-coupled manner (by passing commandInterfacecytoscape.commandCytoScapejavadoc
CyCommandManagerCyCommandManager is a singleton Cytoscape class that provides a global registry of CyCommands and CyCommandNamespaces.Classcytoscape.commandCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

CyCommandNamespaceA CyCommandNamespace represents a reservation for a group of CyCommands.Interfacecytoscape.commandCytoScapejavadoc
CyCommandResultCyCommandResult returns the results from the execution of a command.Classcytoscape.commandCytoScapejavadoc
CyCustomGraphicsInterfacecytoscape.visual.customgraphicCytoScapejavadoc
CyCustomGraphicsEditorFields inherited from class com.Classcytoscape.visual.ui.editors.discreteCytoScapejavadoc
CyCustomGraphicsParserInterfacecytoscape.visual.customgraphicCytoScapejavadoc
CyCustomGraphicsParserFactoryInterfacecytoscape.visual.customgraphicCytoScapejavadoc
CyCustomGraphicsParserFactoryImplClasscytoscape.visual.customgraphic.implCytoScapejavadoc
CyCustomGraphicsTableCellRendererClasscytoscape.visual.customgraphic.uiCytoScapejavadoc
CyCustomGraphicsTreeCellRendererClasscytoscape.visual.customgraphic.uiCytoScapejavadoc
CyCustomGraphicsTreeNodeFields inherited from class org.Classcytoscape.visual.customgraphic.uiCytoScapejavadoc
CyDesktopManagerClasscytoscape.viewCytoScapejavadoc
CyDoublePropertyEditorFields inherited from class com.Classcytoscape.visual.ui.editors.discreteCytoScapejavadoc
CyEdgeClasscytoscapeCytoScapejavadoc
CyEdgeViewFields inherited from interface giny.Interfacecytoscape.viewCytoScapejavadoc
CyFileFilterA convenience implementation of FileFilter that filters out all files except for those type extensions that it knows about.Classcytoscape.utilCytoScapejavadoc
CyFontPropertyEditorFields inherited from class com.Classcytoscape.visual.ui.editors.discreteCytoScapejavadoc
CyGradientTrackRendererClasscytoscape.visual.ui.editors.continuousCytoScapejavadoc
CyGraphAllLODCyGraphAllLOD is the level of detail (LOD) class used for the "Show Graphics Details" menu item.Classcytoscape.dingCytoScapejavadoc
CyGraphLODAn instance of this class defines the level of detail that goes into a single rendering of a graph.Classcytoscape.dingCytoScapejavadoc
CyGroupThe CyGroup interface provides the methods for a group model that maintains the list of nodes belonging to a group, the parent of a particularInterfacecytoscape.groupsCytoScapejavadoc
CyGroupChangeListenerThe CyGroupChangeListener interface provides a mechanism for plugins that track group-related events to get notified of global group changes (new groups, etc.Interfacecytoscape.groupsCytoScapejavadoc
CyGroupImplThe CyGroup class provides the implementation for a group model that maintains the list of nodes belonging to a group, the parent of a particularClasscytoscape.groupsCytoScapejavadoc
CyGroupManagerThe CyGroup class provides the implementation for a group model that maintains the list of nodes belonging to a group, the parent of a particularClasscytoscape.groupsCytoScapejavadoc
CyGroupViewerThe CyGroupViewer interface provides a mechanism for group view implementations to register themselves and get notified of group creation and deletion.Interfacecytoscape.groupsCytoScapejavadoc
CyHelpBrokerThis class creates the Cytoscape Help Broker for managing the JavaHelp system and help set accessClasscytoscape.viewCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

CyInitParamsAn interface that describes the initialization parameters needed by cytoscape.Interfacecytoscape.initCytoScapejavadoc
CyLayoutAlgorithmInterfacecytoscape.layoutCytoScapejavadoc
CyLayoutsClasscytoscape.layoutCytoScapejavadoc
CyLoggerClasscytoscape.loggerCytoScapejavadoc
CyLogHandlerThe CyLogHandler interface must be implemented by log handlers for plugins that wish to handle their own logging.Interfacecytoscape.loggerCytoScapejavadoc
CyMainThis is the main startup class for Cytoscape.ClasscytoscapeCytoScapejavadoc
CyMenusCreates the menu and tool bars for a Cytoscape window object.Classcytoscape.viewCytoScapejavadoc
CyNetworkCyNetwork is the primary class for algorithm writing.InterfacecytoscapeCytoScapejavadoc
CyNetworkAdapterEmpty implementation of the CyNetworkListener interface, following the adapter pattern useful for defining anonymous inner classes.ClasscytoscapeCytoScapejavadoc
CyNetworkDataInterfacecytoscapeCytoScapejavadoc
CyNetworkEventEvents of this class are fired from a CyNetwork object when something happens to the network.ClasscytoscapeCytoScapejavadoc
CyNetworkListenerInterface for listeners that respond to CyNetwork events.InterfacecytoscapeCytoScapejavadoc
CyNetworkNamingClasscytoscape.utilCytoScapejavadoc
CyNetworkTitleChangeClass used for passing along information about the network when the network title has changed (firing an event)ClasscytoscapeCytoScapejavadoc
CyNetworkUtilitiesThis class provides static methods that operate on a CyNetwork to perform various useful tasks.Classcytoscape.dataCytoScapejavadoc
CyNetworkViewCyNetworkView is responsible for actually getting a graph to show up on the screen.Interfacecytoscape.viewCytoScapejavadoc
CyNodeClasscytoscapeCytoScapejavadoc
CyNodeViewFields inherited from interface giny.Interfacecytoscape.viewCytoScapejavadoc
CyObjectPositionPropertyEditorFields inherited from class com.Classcytoscape.visual.ui.editors.discreteCytoScapejavadoc
CysessionJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
CyStartupListener arguments passed from file assocations set by install4j for Mac OS.ClasscytoscapeCytoScapejavadoc
CyStringPropertyEditorFields inherited from class com.Classcytoscape.visual.ui.editors.discreteCytoScapejavadoc
CytopanelJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
CytoPanelInterface to a CytoPanel.Interfacecytoscape.view.cytopanelsCytoScapejavadoc
CytoPanelActionClasscytoscape.actionsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

CytoPanelContainerInterface for Container of CytoPanel Objects.Interfacecytoscape.view.cytopanelsCytoScapejavadoc
CytoPanelImpThe CytoPanel class extends JPanel to provide the following functionality: Floating/Docking of Panel.Classcytoscape.view.cytopanelsCytoScapejavadoc
CytoPanelListenerThis listener interface provides the mechanism to respond to CytoPanel Events.Interfacecytoscape.view.cytopanelsCytoScapejavadoc
CytoPanelNameenum CytoPanelNameextends EnumAn enum that maps names to compass directions.Classcytoscape.view.cytopanelsCytoScapejavadoc
CytopanelsJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
CytoPanelStateCytoPanelState Class.Classcytoscape.view.cytopanelsCytoScapejavadoc
CytoPanelUtilContains methods to assist with various tasks performed by the CytoPanel API.Classcytoscape.view.cytopanelsCytoScapejavadoc
CytoscapeThis class, Cytoscape is the primary class in the API.ClasscytoscapeCytoScapejavadoc
CytoscapeActionClasscytoscape.utilCytoScapejavadoc
CytoscapeDesktopThe CytoscapeDesktop is the central Window for working with CytoscapeSee Also:Serialized FormClasscytoscape.viewCytoScapejavadoc
CytoscapeFingRootGraphFields inherited from interface cytoscape.Classcytoscape.ginyCytoScapejavadoc
CytoscapeInit Cytoscape Init is responsible for starting Cytoscape in a way that makes The comments below are more hopeful than accurate.ClasscytoscapeCytoScapejavadoc
CytoscapeMenuBarClasscytoscape.utilCytoScapejavadoc
CytoscapeModifiedNetworkManagerCytoscapeModifiedNetworkManager manages the modified state settings for the networks and listens for PropertyChangeEvents.ClasscytoscapeCytoScapejavadoc
CytoscapePluginA CytoscapePlugin is the new "Global" plugin.Classcytoscape.pluginCytoScapejavadoc
CytoscapeProgressMonitorCytoscapeProgressMonitor.Classcytoscape.utilCytoScapejavadoc
CytoscapeRootGraphInterfacecytoscape.ginyCytoScapejavadoc
CytoscapeSessionReaderReader to load CYtoscape Session file (.Classcytoscape.data.readersCytoScapejavadoc
CytoscapeSessionWriterWrite session states into files.Classcytoscape.data.writersCytoScapejavadoc
CytoscapeToolBarClasscytoscape.utilCytoScapejavadoc
CytoscapeVersionCytoscapeVersion: identify (and describe) successive versions of cytoscape.ClasscytoscapeCytoScapejavadoc
CyUndoA tiny class for supporting undo in the Cytoscape context.Classcytoscape.util.undoCytoScapejavadoc
CyWebServiceEventEvent object used by Web Service Clients and the core.Classcytoscape.data.webserviceCytoScapejavadoc
CyWebServiceEventListenerListener for Web Service Event handling.Interfacecytoscape.data.webserviceCytoScapejavadoc
CyWebServiceEventSupportClasscytoscape.data.webserviceCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

CyWebServiceExceptionClasscytoscape.data.webserviceCytoScapejavadoc
DashDotStrokeFields inherited from class java.Classcytoscape.visual.strokesCytoScapejavadoc
DatabaseSearchResultClasscytoscape.data.webserviceCytoScapejavadoc
DataSourceJava class for anonymous complex type.Classcytoscape.bookmarksCytoScapejavadoc
DBCrossReferenceReaderReader for database cross reference file.Classcytoscape.data.ontology.readersCytoScapejavadoc
DBCrossReferencesDatabase cress reference.Classcytoscape.data.ontologyCytoScapejavadoc
DBReferenceRepresents an entry in the database cross reference.Classcytoscape.data.ontologyCytoScapejavadoc
DBXrefKeywordsenum DBXrefKeywordsextends EnumEnum Constant SummaryABBREVIATIONClasscytoscape.data.ontology.readersCytoScapejavadoc
DefaultAppearenceBuilderDialog for editing default visual property values.Classcytoscape.visual.uiCytoScapejavadoc
DefaultCyCustomGraphicsParserClasscytoscape.visual.customgraphicCytoScapejavadoc
DefaultViewPanelPanel to show the default properties visually (as graphics).Classcytoscape.visual.uiCytoScapejavadoc
DegreesClassorg.cytoscape.equations.builtinsCytoScapejavadoc
DeleteActionaction for deleting selected Cytoscape nodes and edgesVersion:1.Classcytoscape.actionsCytoScapejavadoc
DeltaArrowClasscytoscape.render.immed.arrowCytoScapejavadoc
DeselectAllActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
DeSelectAllEdgesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
DeSelectAllNodesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
DesktopJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
DesktopSizeJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
DestroyNetworkActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
DestroyNetworkViewActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
DGraphViewDING implementation of the GINY view.Classding.viewCytoScapejavadoc
DiamondArrowClasscytoscape.render.immed.arrowCytoScapejavadoc
DiamondNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
DingCanvasThis class is meant to be extended by a class which is meant to exist within the InternalFrameComponent class.Classding.viewCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

DingNetworkViewNested Class SummaryNested classes/interfaces inherited from class ding.Classcytoscape.dingCytoScapejavadoc
DiscArrowClasscytoscape.render.immed.arrowCytoScapejavadoc
DiscreteLegendClasscytoscape.visual.mappings.discreteCytoScapejavadoc
DiscreteMapping data value is extracted from a bundle of attributes by using a specified dataFields inherited from class cytoscape.Classcytoscape.visual.mappingsCytoScapejavadoc
DiscreteMappingReaderReads in DiscreteMapping Properties.Classcytoscape.visual.mappings.discreteCytoScapejavadoc
DiscreteMappingWriterWrites DiscreteMapping Properties.Classcytoscape.visual.mappings.discreteCytoScapejavadoc
DiscretePropertySetterClasscytoscape.visual.uiCytoScapejavadoc
DiscreteRangeCalculatorRange Calculator for the Discrete Mapper.Classcytoscape.visual.mappings.discreteCytoScapejavadoc
DiscreteTrackRendererClasscytoscape.visual.ui.editors.continuousCytoScapejavadoc
DLayerClasscytoscape.visual.customgraphic.implCytoScapejavadoc
DotStrokeFields inherited from class cytoscape.Classcytoscape.visual.strokesCytoScapejavadoc
DoubleListClassorg.cytoscape.equationsCytoScapejavadoc
DoubleParserParses a String into a Double object.Classcytoscape.visual.parsersCytoScapejavadoc
DoubleRangeValueCalculatorClasscytoscape.visual.mappings.rangecalculatorsCytoScapejavadoc
DownloadableInfoClasscytoscape.pluginCytoScapejavadoc
DownloadableTypeenum DownloadableTypeextends EnumEnum Constant SummaryFILEClasscytoscape.pluginCytoScapejavadoc
DropDownMenuButtonButton with drop down menu.Classcytoscape.util.swingCytoScapejavadoc
DuplicateCalculatorNameExceptionThis Exception is thrown when one attempts to add a Calculator to a CalculatorCatalog that already has a Calculator of the same name andClasscytoscape.visualCytoScapejavadoc
DuplicatePluginClassExceptionSee Also:Serialized FormConstructor SummaryDuplicatePluginClassException()Classcytoscape.pluginCytoScapejavadoc
DynamicGraphA graph whose topology can be modified.Interfacecytoscape.graph.dynamicCytoScapejavadoc
DynamicGraphFactoryA factory for getting cytoscape.Classcytoscape.graph.dynamic.utilCytoScapejavadoc
DynamicLayoutMenuA DynamicLayoutMenu is a more complicated layout menu that constructs layout menu items on-the-fly based on the capabilities of the layout algorithm and environmentClasscytoscape.layout.uiCytoScapejavadoc
EdgeJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
EdgeInterfaceginy.modelCytoScapejavadoc
EdgeAnchorsInterfacecytoscape.render.immedCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

EdgeAppearanceObjects of this class hold data describing the appearance of an Edge.Classcytoscape.visualCytoScapejavadoc
EdgeAppearanceCalculatorThis class calculates the appearance of an Edge.Classcytoscape.visualCytoScapejavadoc
EdgeAttributesPopupDetailsThis class provides a detailed list of attribute information for a givenSee Also:Serialized FormClasscytoscape.dialogsCytoScapejavadoc
EdgeColorPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeContextMenuListeneran interface for responding to PhoebeCanvasDropEvents.Interfaceding.viewCytoScapejavadoc
EdgeDetailsDefines the visual properties of an edge.Classcytoscape.render.statefulCytoScapejavadoc
EdgeFontFacePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeFontSizePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeLabelColorPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeLabelOpacityPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeLabelPositionPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeLabelPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeLabelWidthPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeLineStylePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeLineWidthPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeManipulationActionSee Also:Serialized FormFields inherited from class javax.Classcytoscape.actionsCytoScapejavadoc
EdgeOpacityPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeSourceArrowColorPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeSourceArrowOpacityPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeSourceArrowShapePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeTargetArrowColorPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeTargetArrowOpacityPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeTargetArrowShapePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeToolTipPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
EdgeViewInterfaceginy.viewCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

EditBookmarkDialogClasscytoscape.dialogs.preferencesCytoScapejavadoc
EditNetworkTitleDialogClasscytoscape.dialogsCytoScapejavadoc
EditorDisplayerenum EditorDisplayerextends EnumManaging value editors in for each data types.Classcytoscape.visual.uiCytoScapejavadoc
EditorManagerInterfacecytoscape.visual.uiCytoScapejavadoc
EditorValueRangeTracerClasscytoscape.visual.ui.editors.continuousCytoScapejavadoc
EllipseNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
EqnAttrTrackerConstructor SummaryEqnAttrTracker()Methods inherited from class java.Classcytoscape.data.readersCytoScapejavadoc
EqnCompilerClassorg.cytoscape.equationsCytoScapejavadoc
EqnParserInterfaceorg.cytoscape.equationsCytoScapejavadoc
EqualDashStrokeFields inherited from class java.Classcytoscape.visual.strokesCytoScapejavadoc
EquationClassorg.cytoscape.equationsCytoScapejavadoc
EquationUtilClassorg.cytoscape.equationsCytoScapejavadoc
ErrorClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ExecClasscytoscape.utilCytoScapejavadoc
ExitActionClasscytoscape.actionsCytoScapejavadoc
ExpClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ExpFileChooser adds a JCheckBox at the bottom of the chooser, asking whether to copy expression data to attributes.Classcytoscape.actionsCytoScapejavadoc
ExportActionClasscytoscape.actionsCytoScapejavadoc
ExportAsGMLActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ExportAsGraphicsActionAction for exporting a network view to bitmap or vector graphics.Classcytoscape.actionsCytoScapejavadoc
ExportAsGraphicsFileChooserDialog that chooses file to export to.Classcytoscape.dialogsCytoScapejavadoc
ExportAsInteractionsActionwrite out the current graph to the specified file, using the standard interactions format: nodeA edgeType nodeB.Classcytoscape.actionsCytoScapejavadoc
ExportAsXGMMLActionThis action is for exporting network and attributes in XGMML file.Classcytoscape.actionsCytoScapejavadoc
ExportBitmapOptionsDialogOptions dialog for exporting to bitmap images.Classcytoscape.dialogsCytoScapejavadoc
ExportEdgeAttributesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

ExporterInterface for exporting a network view to a graphics file.Interfacecytoscape.util.exportCytoScapejavadoc
ExportNetworksAsNNFActionThis action is for exporting network and attributes in XGMML file.Classcytoscape.actionsCytoScapejavadoc
ExportNodeAttributesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ExportVizmapActionExport visual styles as a vizmap.Classcytoscape.actionsCytoScapejavadoc
ExpressionDataThis class provides a reader for the common file format for expression data and an interface to access the data.Classcytoscape.dataCytoScapejavadoc
ExpressionDataPopupTableClasscytoscape.dialogsCytoScapejavadoc
ExtensibleMultiHashMapModelPlease try to restrain from using this class.Classcytoscape.data.attr.utilCytoScapejavadoc
FConvNodeClassorg.cytoscape.equations.parse_treeCytoScapejavadoc
FileUtilProvides a platform-dependent way to open files.Classcytoscape.utilCytoScapejavadoc
FilterInterfaceginy.filterCytoScapejavadoc
FilterHistoryJListJList with incremntal search & search history.Classcytoscape.util.swingCytoScapejavadoc
FingCyNetworkFinhCyNetwork provides an implementation of the CyNetwork interface, as well as the GraphPerspective inteface, and also provides theClasscytoscape.ginyCytoScapejavadoc
FingEdgeDepotPlease try to restrain from using this class, or even looking at it.Interfacefing.modelCytoScapejavadoc
FingExtensibleGraphPerspectivePlease try to restrain from using this class.Classfing.modelCytoScapejavadoc
FingExtensibleRootGraphPlease try to restrain from using this class.Classfing.modelCytoScapejavadoc
FingNodeDepotPlease try to restrain from using this class, or even looking at it.Interfacefing.modelCytoScapejavadoc
FingRootGraphFactoryThis class defines static methods that provide new instances of giny.Classfing.modelCytoScapejavadoc
FirstClassorg.cytoscape.equations.builtinsCytoScapejavadoc
FitContentActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
FixedGraph Edges and nodes are non-negative integers; a given node and a given edge in a single graph can be the same integer.Interfacecytoscape.graph.fixedCytoScapejavadoc
FlagAndSelectionHandlerThis class synchronizes the flagged status of nodes and edges as held by a SelectFilter object of a network with the selection status of the correspondingClasscytoscape.viewCytoScapejavadoc
FlatInterpolatorThis simple Interpolator returns the value at either the lower or upper boundary of the domain.Classcytoscape.visual.mappingsCytoScapejavadoc
FlattenIntVectorsgiven a vector which nests other vectors, each resolving eventually to a list of Integers, flatten it out into a simple 1-level-deepClasscytoscape.data.annotationCytoScapejavadoc
FListClassorg.cytoscape.equations.builtinsCytoScapejavadoc
FloatConstantNodeA node in the parse tree representing an integer constant.Classorg.cytoscape.equations.parse_treeCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

FloatParserClasscytoscape.visual.parsersCytoScapejavadoc
FloatRangeValueCalculatorClasscytoscape.visual.mappings.rangecalculatorsCytoScapejavadoc
FontCellRendererClasscytoscape.visual.ui.editors.discreteCytoScapejavadoc
FontChooserDefines a generalized font chooser class.Classcytoscape.visual.uiCytoScapejavadoc
FontConverterClasscytoscape.visual.converterCytoScapejavadoc
FontParserParses a String into a Font object.Classcytoscape.visual.parsersCytoScapejavadoc
FontRendererFontRenderer describes a class that renders each font name in a JList or JComboBox in the face specified.Classcytoscape.visual.uiCytoScapejavadoc
ForwardSlashStrokeNested Class SummaryNested classes/interfaces inherited from class cytoscape.Classcytoscape.visual.strokesCytoScapejavadoc
FuncCallNodeA node in the parse tree representing a function call.Classorg.cytoscape.equations.parse_treeCytoScapejavadoc
FunctionInterfaceorg.cytoscape.equationsCytoScapejavadoc
FunctionErrorClassorg.cytoscape.equationsCytoScapejavadoc
FunctionUtilA collection of static methods that may be useful for the implementation of built-in functions.Classorg.cytoscape.equationsCytoScapejavadoc
GCTestClassfing.model.testCytoScapejavadoc
GeneOntologyGene Ontology object based on general Ontology.Classcytoscape.data.ontologyCytoScapejavadoc
GenericNodeCustomGraphicCalculatorNested Class SummaryNested classes/interfaces inherited from class cytoscape.Classcytoscape.visual.calculatorsCytoScapejavadoc
GeoMeanClassorg.cytoscape.equations.builtinsCytoScapejavadoc
getCanonicalNameClasscytoscape.data.serversCytoScapejavadoc
getCommonNameClasscytoscape.data.serversCytoScapejavadoc
GinyEdgeControlDialogpresent a JTree with edge attributes names as top level nodes, and attribute values as child nodes; any node/s, once selected, are operated on by buttons in the bottomClasscytoscape.dialogsCytoScapejavadoc
GinyUtilsUtility operations for selection and hiding/unhiding nodes and edges in a Giny GraphView.Classcytoscape.actionsCytoScapejavadoc
GlobalAppearanceObjects of this class hold data describing global appearance attributes ofConstructor SummaryGlobalAppearance()Classcytoscape.visualCytoScapejavadoc
GlobalAppearanceCalculatorThis class calculates global visual attributes such as the background color of the graph window.Classcytoscape.visualCytoScapejavadoc
GMLExceptionException for GML Reader.Classcytoscape.data.readersCytoScapejavadoc
GMLFileFilterFileFilter for Reading in GML Files.Classcytoscape.utilCytoScapejavadoc
GMLNodeThis class represents a GMLNode.Classcytoscape.data.readersCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

GMLParserThe purpose of this class is to translate GML into an object tree, and print out an object tree into GMLClasscytoscape.data.readersCytoScapejavadoc
GMLReaderThis class is responsible for converting a gml object tree into cytoscape objects New features to the current version: 1.Classcytoscape.data.readersCytoScapejavadoc
GMLTagenum GMLTagextends EnumEnum Constant SummaryARROWClasscytoscape.data.readersCytoScapejavadoc
GMLTreeThis class wraps around GMLNode and provides various methods for constructing a tree structure given other data.Classcytoscape.data.readersCytoScapejavadoc
GMLWriterThe purpse of this class is to translate cytoscape data structures into a gml object tree, we can then use the gml parser to write this tree out into aClasscytoscape.data.readersCytoScapejavadoc
GnuParserThe class GnuParser provides an implementation of theVersion:$Revision: 155404 $Author:John Keyes (john at integralsource.Classorg.apache.commons.cliCytoScapejavadoc
GOTermA Gene Ontology term.Classcytoscape.data.ontologyCytoScapejavadoc
GradientEditorPanelClasscytoscape.visual.ui.editors.continuousCytoScapejavadoc
GradientLayerCustomGraphicsProof of concept code to generate Custom Graphics dynamically as vector graphics.Classcytoscape.visual.customgraphic.impl.vectorCytoScapejavadoc
GradientOvalLayerFields inherited from class cytoscape.Classcytoscape.visual.customgraphic.impl.vectorCytoScapejavadoc
GradientPaintFactoryClasscytoscape.visual.customgraphic.paintCytoScapejavadoc
GradientRoundRectangleLayerFields inherited from class cytoscape.Classcytoscape.visual.customgraphic.impl.vectorCytoScapejavadoc
GraphGraphicsThe purpose of this class is to make the proper calls on a Graphics2D object to efficiently render nodes, labels, and edges.Classcytoscape.render.immedCytoScapejavadoc
GraphicsParserClasscytoscape.visual.parsersCytoScapejavadoc
GraphLODAn instance of this class defines the level of detail that goes into a single rendering of a graph.Classcytoscape.render.statefulCytoScapejavadoc
GraphObjectInterfaceginy.modelCytoScapejavadoc
GraphObjectSelectionClasscytoscape.dialogsCytoScapejavadoc
GraphObjectSelectionActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
GraphPerspective TODO: Remove deprecated methods and add generics parameters.Interfaceginy.modelCytoScapejavadoc
GraphPerspectiveChangeEventThe event source must be the GraphPerspective that changed.Classginy.modelCytoScapejavadoc
GraphPerspectiveChangeListenerInterfaceginy.modelCytoScapejavadoc
GraphReaderInterface for Reading in Cytoscape Graphs.Interfacecytoscape.data.readersCytoScapejavadoc
GraphRendererThis class contains a chunk of procedural code that stitches together several external modules in an effort to efficiently render graphs.Classcytoscape.render.statefulCytoScapejavadoc
GraphSetUtilsClasscytoscape.utilCytoScapejavadoc
GraphViewInterfaceginy.viewCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

GraphViewChangeEventThe event source must be the GraphPerspective that changed.Classginy.viewCytoScapejavadoc
GraphViewChangeListenerInterfaceginy.viewCytoScapejavadoc
GraphViewControllerClasscytoscape.viewCytoScapejavadoc
GraphViewHandlerThis interface represents an object that handles a change in a giny.Interfacecytoscape.viewCytoScapejavadoc
GridBagGroupClasscytoscape.dialogsCytoScapejavadoc
GridNodeLayoutThe GridNodeLayout provides a very simple layout, suitable as the default layout for Cytoscape data readers.Classcytoscape.layout.algorithmsCytoScapejavadoc
HalfBottomArrowClasscytoscape.render.immed.arrowCytoScapejavadoc
HalfTopArrowClasscytoscape.render.immed.arrowCytoScapejavadoc
HaltableA hook for requesting that a running process be halted.Interfacecytoscape.taskCytoScapejavadoc
HarMeanClassorg.cytoscape.equations.builtinsCytoScapejavadoc
HelpAboutActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
HelpContactHelpDeskActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
HelpContentsActionReally just a wrapper for the CSH.Classcytoscape.actionsCytoScapejavadoc
HelpFormatterA formatter of help messages for the current command line optionsAuthor:Slawek Zachcial, John Keyes (john at integralsource.Classorg.apache.commons.cliCytoScapejavadoc
HexagonNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
HiddenEdgesJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
HiddenNodesJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
HideEdgeListenerAdds EdgeView and EdgeView vizmap bypass listeners to network views as the views are created.Classcytoscape.visual.uiCytoScapejavadoc
HideNodeListenerAdds NodeView and EdgeView vizmap bypass listeners to network views as the views are created.Classcytoscape.visual.uiCytoScapejavadoc
HideSelectedActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
HideSelectedEdgesActionClasscytoscape.actionsCytoScapejavadoc
HideSelectedNodesActionClasscytoscape.actionsCytoScapejavadoc
IconPopupButtonClasscytoscape.dialogsCytoScapejavadoc
IconTableCellRendererClasscytoscape.viewCytoScapejavadoc
IdentDescriptorClassorg.cytoscape.equations.interpreterCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

IdentNodeA node in the parse tree representing an attribute reference.Classorg.cytoscape.equations.parse_treeCytoScapejavadoc
IDGeneratorClasscytoscape.visual.customgraphicCytoScapejavadoc
IfClassorg.cytoscape.equations.builtinsCytoScapejavadoc
IListClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ImageImposterThe primary purpose of this class is to enable an arbitrary Graphics object to receive rendering calls from aClasscytoscape.render.exportCytoScapejavadoc
ImageUtilClasscytoscape.visual.customgraphicCytoScapejavadoc
ImplementsGraphTestClassfing.model.testCytoScapejavadoc
ImportAttributeMatrixDialogThis class prompts the user for data for entry of the attribute matrix, which includes expression data as a use case.Classcytoscape.dialogsCytoScapejavadoc
ImportEdgeAttributesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ImportExpressionMatrixActionUser has requested loading of an Expression Matrix File.Classcytoscape.actionsCytoScapejavadoc
ImportGraphFileActionImports a graph of arbitrary type.Classcytoscape.actionsCytoScapejavadoc
ImportHandlerCentral registry for all Cytoscape import classes.Classcytoscape.dataCytoScapejavadoc
ImportNetworkDialogClasscytoscape.dialogsCytoScapejavadoc
ImportNodeAttributesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ImportVizmapActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
IndeterminateProgressBarThis class creates a dialog with a JProgressBar in indeterminate state.Classcytoscape.utilCytoScapejavadoc
InnerCanvasThe GUI component for drawing networks.Classding.viewCytoScapejavadoc
InnerCanvasEventSee Also:Serialized FormFields inherited from class java.Classding.viewCytoScapejavadoc
InnerCanvasListenerInterfaceding.viewCytoScapejavadoc
InstallableInterfacecytoscape.pluginCytoScapejavadoc
InstallablePluginClasscytoscape.pluginCytoScapejavadoc
InstallableThemeClasscytoscape.pluginCytoScapejavadoc
Instructionenum Instructionextends EnumEnum Constant SummaryAREFClassorg.cytoscape.equations.interpreterCytoScapejavadoc
IntArrayA dynamically growing array of integers.Classcytoscape.util.intrCytoScapejavadoc
IntBTreeAn in-memory B+-tree that stores integers.Classcytoscape.util.intrCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

IntBTreeConstructionTunerClasscytoscape.util.intr.testCytoScapejavadoc
IntBTreePerformanceClasscytoscape.util.intr.testCytoScapejavadoc
IntBTreeQueryTunerClasscytoscape.util.intr.testCytoScapejavadoc
IntegerEntryFieldClasscytoscape.dialogsCytoScapejavadoc
IntEnumeratorAn enumeration over a list of 32 bit integers.Interfacecytoscape.util.intrCytoScapejavadoc
InteractionInteraction.Classcytoscape.dataCytoScapejavadoc
InteractionsReaderReader for graphs in the interactions file format.Classcytoscape.data.readersCytoScapejavadoc
InteractionWriterA few utility methods to assist in writing SIF files.Classcytoscape.data.writersCytoScapejavadoc
InternalFrameComponentThis class manages the JLayeredPane that resides in each internal frame of cytoscape.Classcytoscape.viewCytoScapejavadoc
InterpolatorThis interface defines an interpolation function that takes two pairs of (domain,range) values plus a target domain value, and calculates anInterfacecytoscape.visual.mappingsCytoScapejavadoc
InterpolatorFactoryProvides static factory methods for constructing known interpolators from a recognized name, for example from a properties object.Classcytoscape.visual.mappingsCytoScapejavadoc
InterpreterClassorg.cytoscape.equations.interpreterCytoScapejavadoc
IntHashAn insert-only hashtable that has non-negative 32 bit integer keys; no satellite data is stored in this hashtable.Classcytoscape.util.intrCytoScapejavadoc
IntHashPerformanceClasscytoscape.util.intr.testCytoScapejavadoc
IntIntHashAn insert-only hashtable that has non-negative 32 bit integer keys and non-negative 32 bit integer values.Classcytoscape.util.intrCytoScapejavadoc
IntIteratorAn iteration over a list of 32 bit integers.Interfacecytoscape.util.intrCytoScapejavadoc
IntObjHashAn insert-only hashtable that has non-negative 32 bit integer keys and non-null object values.Classcytoscape.util.intrCytoScapejavadoc
IntQueueA first-in, first-out container of 32 bit integers.Classcytoscape.util.intrCytoScapejavadoc
IntStackA first-in, last-out container of 32 bit integers.Classcytoscape.util.intrCytoScapejavadoc
IntTHashAn insert-only hashtable that has non-negative 32 bit integer keys and non-null object values.Classcytoscape.util.intrCytoScapejavadoc
InvalidDownloadableClasscytoscape.pluginCytoScapejavadoc
InvertSelectedEdgesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
InvertSelectedNodesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
JErrorPanelCommon UI element for displaying errors and stack traces.Classcytoscape.task.uiCytoScapejavadoc
JnlpWriterUtilClasscytoscape.utilCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

JointIntegerEntryClasscytoscape.dialogsCytoScapejavadoc
JStatusBarSimple status bar with 3 fields.Classcytoscape.util.swingCytoScapejavadoc
JTaskCommon UI element for visually monitoring task progress.Classcytoscape.task.uiCytoScapejavadoc
JTaskConfigUsed to configure the JTask UI component.Classcytoscape.task.uiCytoScapejavadoc
JTreeTableThis example shows how to create a simple JTreeTable component, by using a JTree as a renderer (and editor) for the cells in a particular column in theClasscytoscape.util.swingCytoScapejavadoc
Justificationenum Justificationextends EnumEnum Constant SummaryJUSTIFY_CENTERClassginy.viewCytoScapejavadoc
KeyValueKey and Value pair in GML file.Classcytoscape.data.readersCytoScapejavadoc
LabelInterfaceginy.viewCytoScapejavadoc
LabelPlacerGraphicA drag and drop graphic that allows users to set the placement Deprecated.Classcytoscape.visual.uiCytoScapejavadoc
LabelPositionDeprecated.Classcytoscape.visualCytoScapejavadoc
LabelPositionParserParses a String into a LabelPosition object.Classcytoscape.visual.parsersCytoScapejavadoc
LabelTextPanelClasscytoscape.dialogsCytoScapejavadoc
LargestClassorg.cytoscape.equations.builtinsCytoScapejavadoc
LastClassorg.cytoscape.equations.builtinsCytoScapejavadoc
LayerWrapper for actual implementations of layers.Interfacecytoscape.visual.customgraphicCytoScapejavadoc
LayoutAdapterLayoutAdapter provides a *very* minimal interface to implement a layout algorithm.Classcytoscape.layoutCytoScapejavadoc
LayoutAlgorithmInterfacecytoscape.layoutCytoScapejavadoc
LayoutMenuA DynamicLayoutMenu is a more complicated layout menu that constructs layout menu items on-the-fly based on the capabilities of the layout algorithm and environmentClasscytoscape.layout.uiCytoScapejavadoc
LayoutMenuManagerClasscytoscape.layout.uiCytoScapejavadoc
LayoutPropertiesThe LayoutProperties class is a helper class to support the management of settings and properties for layout algorithms that implementClasscytoscape.layoutCytoScapejavadoc
LayoutSettingsDialogThe LayoutSettingsDialog is a dialog that provides an interface into all of the various settings for layout algorithms.Classcytoscape.layout.uiCytoScapejavadoc
LayoutTaskA wrapper for applying a layout in a task.Classcytoscape.layoutCytoScapejavadoc
LeftClassorg.cytoscape.equations.builtinsCytoScapejavadoc
LegacyCustomNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
LegendDialogClasscytoscape.visual.uiCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

LegendTableClasscytoscape.visual.mappingsCytoScapejavadoc
LenClassorg.cytoscape.equations.builtinsCytoScapejavadoc
LicenseDialogClasscytoscape.dialogs.pluginsCytoScapejavadoc
LinearNumberInterpolatorThis subclass of NumberInterpolator further assumes a linear interpolation, and calculates the fractional distance of the target domain value fromClasscytoscape.visual.mappingsCytoScapejavadoc
LinearNumberToColorInterpolatorThe class provides a linear interpolation between color values.Classcytoscape.visual.mappingsCytoScapejavadoc
LinearNumberToNumberInterpolatorThe class assumes that the supplied range objects are Numbers, and returns a linearly interplated value according to the value of frac.Classcytoscape.visual.mappingsCytoScapejavadoc
LineStyleenum LineStyleextends EnumEnum Constant SummaryBACKWARD_SLASHClasscytoscape.visualCytoScapejavadoc
LineStyleParserParses a String into a yFiles shape, which is represented by a byte identifier.Classcytoscape.visual.parsersCytoScapejavadoc
LineTypeIconClasscytoscape.visual.ui.iconCytoScapejavadoc
ListFromFileSelectionActionSelect nodes from a text list of node IDs.Classcytoscape.actionsCytoScapejavadoc
ListToStringClassorg.cytoscape.equations.builtinsCytoScapejavadoc
LnClassorg.cytoscape.equations.builtinsCytoScapejavadoc
loadAnnotationload an annotation into an rmi biodata server.Classcytoscape.data.serversCytoScapejavadoc
loadAnnotationFromFlatFilesload an annotation into an rmi biodata server.Classcytoscape.data.serversCytoScapejavadoc
LoadImageTaskClasscytoscape.visual.customgraphicCytoScapejavadoc
LoadNetworkTaskTask to load a new network.Classcytoscape.actionsCytoScapejavadoc
loadThesaurusload an thesaurus into an rmi biodata server.Classcytoscape.data.serversCytoScapejavadoc
LogClassorg.cytoscape.equations.builtinsCytoScapejavadoc
LoggerActionCreated by IntelliJ IDEA.Classcytoscape.actionsCytoScapejavadoc
LoggerDialogClasscytoscape.dialogs.loggerCytoScapejavadoc
LogLevelenum LogLevelextends EnumThe levels of logged messagesClasscytoscape.loggerCytoScapejavadoc
LongDashStrokeFields inherited from class java.Classcytoscape.visual.strokesCytoScapejavadoc
LongEnumeratorAn enumeration over a list of 64 bit integers.Interfacecytoscape.util.intrCytoScapejavadoc
LongListClassorg.cytoscape.equationsCytoScapejavadoc
LongLongHashAn insert-only hashtable that has non-negative 64 bit integer keys and non-negative 64 bit integer values.Classcytoscape.util.intrCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

LowerClassorg.cytoscape.equations.builtinsCytoScapejavadoc
MacAppConfigConfigures the Mac OS X Info.Classcytoscape.utilCytoScapejavadoc
ManagerExceptionThrown to indicate PluginManager errorsAuthor:skillcoyneSee Also:Serialized FormClasscytoscape.pluginCytoScapejavadoc
ManagerModelFairly similar to DefaultTreeModel but I wanted to add some extra functionality to removing/adding nodes and use my own node objectsClasscytoscape.dialogs.pluginsCytoScapejavadoc
ManagerUtilClasscytoscape.pluginCytoScapejavadoc
MapperAndAttributeClasscytoscape.visual.uiCytoScapejavadoc
MappingFactoryThis class provides a static factory method for constructing an instance of ObjectMapping as specified by a Properties object and other arguments.Classcytoscape.visual.mappingsCytoScapejavadoc
MappingKeyFactoryClasscytoscape.visual.uiCytoScapejavadoc
MappingManagerInterfacecytoscape.visual.mappingsCytoScapejavadoc
MappingManagerImplClasscytoscape.visual.mappingsCytoScapejavadoc
MappingTypeenum MappingTypeextends EnumDefines visual mapping types.Classcytoscape.visual.mappingsCytoScapejavadoc
MappingUtilProvides simple utility methods for the Mapping classes.Classcytoscape.visual.mappingsCytoScapejavadoc
MathUtilClasscytoscape.utilCytoScapejavadoc
MaxClassorg.cytoscape.equations.builtinsCytoScapejavadoc
MedianClassorg.cytoscape.equations.builtinsCytoScapejavadoc
MemoryReporterA class used to track JVM memory usage.Classcytoscape.utilCytoScapejavadoc
MemoryUsageActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
MetadataEntriesenum MetadataEntriesextends EnumEntries in the network metadata.Classcytoscape.data.readersCytoScapejavadoc
MetadataParserManipulates network metadata for loading and saving.Classcytoscape.data.readersCytoScapejavadoc
MidClassorg.cytoscape.equations.builtinsCytoScapejavadoc
MinClassorg.cytoscape.equations.builtinsCytoScapejavadoc
MinIntHeapA heap is an implementation of a priority queue.Classcytoscape.util.intrCytoScapejavadoc
MinIntHeapPerformanceClasscytoscape.util.intr.testCytoScapejavadoc
MinMaxDialogClasscytoscape.visual.ui.editors.continuousCytoScapejavadoc
MinMaxDoublefind the min and max of a 1- or 2-d aarray of doubles.Classcytoscape.utilCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

MinMaxIntfind the min and max of a 1- or 2-d array of ints.Classcytoscape.utilCytoScapejavadoc
MiscClasscytoscape.utilCytoScapejavadoc
MiscGBWe DO need to replace this with swing-layout! Miscellaneous static GridBagLayout utilitiesClasscytoscape.dialogsCytoScapejavadoc
MissingArgumentExceptionThrown when an option requiring an argument is not provided with an argument.Classorg.apache.commons.cliCytoScapejavadoc
MissingOptionExceptionThrown when a required option has not been provided.Classorg.apache.commons.cliCytoScapejavadoc
ModClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ModeClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ModulePropertiesInterfacecytoscape.utilCytoScapejavadoc
ModulePropertiesImplClasscytoscape.utilCytoScapejavadoc
MolecularFunctionAnnotationReaderThe purpose of this class is to convert a 'gene_association.Classcytoscape.cruft.oboCytoScapejavadoc
MolecularFunctionAnnotationTesterClasscytoscape.cruft.obo.testCytoScapejavadoc
MonitoredTaskInterfacecytoscape.utilCytoScapejavadoc
mRNAMeasurementClasscytoscape.dataCytoScapejavadoc
MultiHashMapThis interface consists of the API specification to bind attribute values to objects.Interfacecytoscape.data.attrCytoScapejavadoc
MultiHashMapDefinitionThis interface contains the API specification for creating attribute definitions.Interfacecytoscape.data.attrCytoScapejavadoc
MultiHashMapDefinitionListenerInterfacecytoscape.data.attrCytoScapejavadoc
MultiHashMapFactoryThis class provides access to implementations of MultiHashMap and MultiHashMapDefinition.Classcytoscape.data.attr.utilCytoScapejavadoc
MultiHashMapHelpersThis class contains static utilitarian methods that return information pertaining to attributes.Classcytoscape.data.attr.utilCytoScapejavadoc
MultiHashMapListenerInterfacecytoscape.data.attrCytoScapejavadoc
MutableBoolClasscytoscape.utilCytoScapejavadoc
MutableIntClasscytoscape.utilCytoScapejavadoc
MutableSpacialIndex2DA spacial index for objects in two dimensions, with support for insertions and deletions.Interfacecytoscape.geom.spacialCytoScapejavadoc
MutableStringClasscytoscape.utilCytoScapejavadoc
NestedNetworkChangeEventThis event will be fired when nested network is created/removed.Classginy.modelCytoScapejavadoc
NestedNetworkChangeEventListenerListener for nested network change events.Interfaceginy.modelCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

NestedNetworkListenerAdds NodeView and EdgeView vizmap bypass listeners to network views as the views are created.Classcytoscape.visual.uiCytoScapejavadoc
NestedNetworkReaderSpecial interface for Graph readers which read nested networks from a file.Interfacecytoscape.data.readersCytoScapejavadoc
NestedNetworkViewUpdaterThis class manages images that represent nested networks.Classcytoscape.utilCytoScapejavadoc
NetworkJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
NetworkDataThere is an event fired anytime that a value is modified, you need to be listener to the attribute name though.Classcytoscape.dataCytoScapejavadoc
NetworkExpansionMenuClasscytoscape.data.webservice.utilCytoScapejavadoc
NetworkFrameJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
NetworkFramesJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
NetworkImportWebServiceClientInterfacecytoscape.data.webserviceCytoScapejavadoc
NetworkMetaDataDialogDialog for editing network metadata in RDF.Classcytoscape.dialogsCytoScapejavadoc
NetworkMetaDataTableModelTable model for the Network Metadata Dialog.Classcytoscape.dialogsCytoScapejavadoc
NetworkPanelGUI component for managing network list in current session.Classcytoscape.viewCytoScapejavadoc
NetworkSelectorPanelClasscytoscape.util.swingCytoScapejavadoc
NetworkTreeJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
NetworkTreeNodeSee Also:Serialized FormFields inherited from class javax.Classcytoscape.viewCytoScapejavadoc
NetworkTreeTableModelInner class that extends the AbstractTreeTableModelFields inherited from class cytoscape.Classcytoscape.viewCytoScapejavadoc
NetworkViewManagerClasscytoscape.viewCytoScapejavadoc
NewMappingBuilderConstructor SummaryNewMappingBuilder()Methods inherited from class java.Classcytoscape.visual.uiCytoScapejavadoc
NewNetworkActioncreates a new network and associates an editor with itVersion:1.Classcytoscape.actionsCytoScapejavadoc
NewSessionActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
NewSliderClasscytoscape.dialogsCytoScapejavadoc
NewStringPopupDialogNewStringPopupDialog: a dialog that is used for creating a new string.Classcytoscape.dialogsCytoScapejavadoc
NewWindowSelectedNodesEdgesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
NewWindowSelectedNodesOnlyActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
NNFFileFilterFile filter for Nested Network Format (NNF).Classcytoscape.utilCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

NNFParserParser for NNF files.Classcytoscape.data.readersCytoScapejavadoc
NNFReaderGraph file reader for NNF files.Classcytoscape.data.readersCytoScapejavadoc
NoArrowClasscytoscape.render.immed.arrowCytoScapejavadoc
NodeJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
NodeInterfaceginy.modelCytoScapejavadoc
NodeA node in the parse tree.Classorg.cytoscape.equations.parse_treeCytoScapejavadoc
NodeAppearanceObjects of this class hold data describing the appearance of a Node.Classcytoscape.visualCytoScapejavadoc
NodeAppearanceCalculatorThis class calculates the appearance of a Node.Classcytoscape.visualCytoScapejavadoc
NodeBorderColorPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeBorderOpacityPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeContextMenuListeneran interface for responding to PhoebeCanvasDropEvents.Interfaceding.viewCytoScapejavadoc
NodeCustomGraphicsPositionPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeCustomGraphicsPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeDetailsDefines visual properties of a node modulo the node size and location Even though this class is not declared abstract, in most situations itClasscytoscape.render.statefulCytoScapejavadoc
NodeFillColorPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeFontFacePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeFontSizePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeHeightPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeIconIcon for node shapes.Classcytoscape.visual.ui.iconCytoScapejavadoc
NodeLabelColorPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeLabelOpacityPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeLabelPositionPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeLabelPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeLabelWidthPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeLineStylePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

NodeLineWidthPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeOpacityPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeShapeAn interface defining the methods necessary to render a node shape in GraphGraphics.Interfacecytoscape.render.immed.nodeshapeCytoScapejavadoc
NodeShapeenum NodeShapeextends EnumSince:Cytoscape 2.Classcytoscape.visualCytoScapejavadoc
NodeShapeConverterClasscytoscape.visual.converterCytoScapejavadoc
NodeShapeParserParses a String into a yFiles shape, which is represented by a byte identifier.Classcytoscape.visual.parsersCytoScapejavadoc
NodeShapePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeShapeRangeValueCalculatorClasscytoscape.visual.mappings.rangecalculatorsCytoScapejavadoc
NodeShowNestedNetworkPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeSizePropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeToolTipPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NodeViewAny and all questions should be directed to me.Interfaceginy.viewCytoScapejavadoc
NodeWidthPropFields inherited from class cytoscape.Classcytoscape.visual.propertiesCytoScapejavadoc
NormDistClassorg.cytoscape.equations.builtinsCytoScapejavadoc
NoRTreeQueryPerformanceClasscytoscape.geom.rtree.testCytoScapejavadoc
NotClassorg.cytoscape.equations.builtinsCytoScapejavadoc
NotAPluginExceptionThrown to indicate that a class cannot be used as a plugin becuase it does not extend CytoscapePlugin.Classcytoscape.pluginCytoScapejavadoc
NowClassorg.cytoscape.equations.builtinsCytoScapejavadoc
NthClassorg.cytoscape.equations.builtinsCytoScapejavadoc
NullCustomGraphicsNull object for Custom Graphics.Classcytoscape.visual.customgraphicCytoScapejavadoc
NumberInterpolatorThis partial implementation of Interpolator assumes that the domain values are some kind of number, and extracts the values into ordinaryClasscytoscape.visual.mappingsCytoScapejavadoc
ObjectFactoryThis object contains factory methods for each Java content interface and Java element interface Classcytoscape.bookmarksCytoScapejavadoc
ObjectFactoryThis object contains factory methods for each Java content interface and Java element interface Classcytoscape.generatedCytoScapejavadoc
ObjectMappingMappings should implement this interface.Interfacecytoscape.visual.mappingsCytoScapejavadoc
ObjectPlacerControlClasscytoscape.visual.uiCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

ObjectPlacerGraphicClasscytoscape.visual.uiCytoScapejavadoc
ObjectPositionInterface representing relative location of graphics objects, such as labels or custom graphics.Interfaceginy.viewCytoScapejavadoc
ObjectPositionCellRendererClasscytoscape.visual.ui.editors.discreteCytoScapejavadoc
ObjectPositionConverterClasscytoscape.visual.converterCytoScapejavadoc
ObjectPositionImplClassding.viewCytoScapejavadoc
ObjectPositionParserClasscytoscape.visual.parsersCytoScapejavadoc
ObjectToStringThis class contains a method that does the reverse of the various parsing classes in this package, i.Classcytoscape.visual.parsersCytoScapejavadoc
OBOFlatFileReader This is a general OBO (Open Biomedical Ontologies: http://obo.Classcytoscape.data.ontology.readersCytoScapejavadoc
OBOHeaderTagsenum OBOHeaderTagsextends EnumEnum Constant SummaryAUTO_GENERATED_BYClasscytoscape.data.ontology.readersCytoScapejavadoc
OboOntologyReaderThe purpose of this class is to convert a 'gene_ontology.Classcytoscape.cruft.oboCytoScapejavadoc
OboOntologyReader2The purpose of this class is to convert a 'gene_ontology.Classcytoscape.cruft.oboCytoScapejavadoc
OboOntologyTesterClasscytoscape.cruft.obo.testCytoScapejavadoc
OBOTagsenum OBOTagsextends EnumTags used in OBO file:Classcytoscape.data.ontology.readersCytoScapejavadoc
OctagonNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
OntologyContains a collection of OntologyTerms, each of which may have pointers to other terms, creating a hierarchical controlled vocabulary.Classcytoscape.data.annotationCytoScapejavadoc
OntologyGeneral Ontology class which implements interface from BioJava project.Classcytoscape.data.ontologyCytoScapejavadoc
OntologyJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
OntologyDescriptionDistinguish among different ontologies, by curator and type.Classcytoscape.data.annotationCytoScapejavadoc
OntologyFactoryClasscytoscape.data.ontologyCytoScapejavadoc
OntologyFlatFileReaderClasscytoscape.data.annotation.readersCytoScapejavadoc
OntologyReaderInterface for all ontology file readers.Interfacecytoscape.data.ontology.readersCytoScapejavadoc
OntologyServerOntology Server which manages ontologies, aliases, and bookmarks.Classcytoscape.data.serversCytoScapejavadoc
OntologyServerJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
OntologyTermRepresents one node in an ontology, which is a hierarchical classification of entities using a controlled vocabulary.Classcytoscape.data.annotationCytoScapejavadoc
OntologyTermSimple in-memory implementation of an ontology term based on BioJava's This implementation uses CyNetwork and CyAttributes as its actual dataClasscytoscape.data.ontologyCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

OntologyXmlReaderClasscytoscape.data.annotation.readersCytoScapejavadoc
OpenBrowserClasscytoscape.utilCytoScapejavadoc
OpenSessionActionCall the session reader and read everything in the zip archive.Classcytoscape.actionsCytoScapejavadoc
OptionDescribes a single command-line option.Classorg.apache.commons.cliCytoScapejavadoc
OptionBuilderOptionBuilder allows the user to create Options using descriptive Details on the Builder pattern can be found atClassorg.apache.commons.cliCytoScapejavadoc
OptionGroupA group of mutually exclusive options.Classorg.apache.commons.cliCytoScapejavadoc
OptionsMain entry-point into the library.Classorg.apache.commons.cliCytoScapejavadoc
OptionValidatorValidates an Option string.Classorg.apache.commons.cliCytoScapejavadoc
OrClassorg.cytoscape.equations.builtinsCytoScapejavadoc
PaintFactoryFactory for creating paint object for a rectangulaer bounds.Interfacecytoscape.render.statefulCytoScapejavadoc
PanelJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
PanelsJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
ParallelogramNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
ParallelStrokeFields inherited from class cytoscape.Classcytoscape.visual.strokesCytoScapejavadoc
ParentJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
ParseExceptionBase for Exceptions thrown during parsing of a command-line.Classorg.apache.commons.cliCytoScapejavadoc
ParserParser creates CommandLines.Classorg.apache.commons.cliCytoScapejavadoc
ParserA singleton EqnParserConstructor SummaryParser()Classorg.cytoscape.equationsCytoScapejavadoc
ParserControlParserControl is used to control particular behaviour of the parser.Interfaceorg.apache.commons.cli.avalonCytoScapejavadoc
PassThroughMappingDefines a mapping from a bundle of data attributes to a visual attribute.Classcytoscape.visual.mappingsCytoScapejavadoc
PatternOptionBuilder Allows Options to be created from a single String.Classorg.apache.commons.cliCytoScapejavadoc
PDFExporterPDF exporter by the iText library.Classcytoscape.util.exportCytoScapejavadoc
PercentUtilHelper Class for Calculating Percentage of Multi-Step Processes.Classcytoscape.utilCytoScapejavadoc
PermutClassorg.cytoscape.equations.builtinsCytoScapejavadoc
PersistImageTaskClasscytoscape.visual.customgraphicCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

PhoebeCanvasDropEventforwards the drop event and its locationSee Also:Serialized FormClassphoebeCytoScapejavadoc
PhoebeCanvasDropListeneran interface for responding to PhoebeCanvasDropEvents.InterfacephoebeCytoScapejavadoc
PhoebeCanvasDroppableinterface for maintaining listeners for PhoebeCanvasDropEvents.InterfacephoebeCytoScapejavadoc
PhoebeNodeControlAn Adobe style node organizer.Classcytoscape.dialogsCytoScapejavadoc
PiClassorg.cytoscape.equations.builtinsCytoScapejavadoc
PipeStrokeClasscytoscape.visual.strokesCytoScapejavadoc
PluginJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
PluginExceptionClasscytoscape.pluginCytoScapejavadoc
PluginFileReaderClasscytoscape.pluginCytoScapejavadoc
PluginIndexClasscytoscape.dialogs.pluginsCytoScapejavadoc
PluginInfoClasscytoscape.pluginCytoScapejavadoc
PluginInquireActionObject should be implmeneted by anyone using the PluginManager#inquireThread(String, PluginInquireAction) method to get plugins from a given site.Classcytoscape.pluginCytoScapejavadoc
PluginManageDialogClasscytoscape.dialogs.pluginsCytoScapejavadoc
PluginManagerClasscytoscape.pluginCytoScapejavadoc
PluginManagerActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
PluginManagerInquireTaskClasscytoscape.pluginCytoScapejavadoc
PluginPropertiesThis class reads the plugin.Classcytoscape.pluginCytoScapejavadoc
PluginsJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
PluginsTableModelSee Also:Serialized FormFields inherited from class javax.Classcytoscape.dialogs.preferencesCytoScapejavadoc
PluginStatusenum PluginStatusextends EnumEnum Constant SummaryCURRENTClasscytoscape.pluginCytoScapejavadoc
PluginTrackerClasscytoscape.pluginCytoScapejavadoc
PluginUpdateActionClasscytoscape.actionsCytoScapejavadoc
PluginUpdateDialogClasscytoscape.dialogs.pluginsCytoScapejavadoc
PluginUrlDialogClasscytoscape.dialogs.pluginsCytoScapejavadoc
PluginVersionUtilsClasscytoscape.pluginCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

PluginXmlenum PluginXmlextends EnumEnum Constant SummaryAUTHORClasscytoscape.pluginCytoScapejavadoc
PointTextListenerListens for a User Initiated Change in any of the JTextFields in the Continuous Mapper UI.Classcytoscape.visual.mappings.continuousCytoScapejavadoc
PopupFontChooserClasscytoscape.visual.uiCytoScapejavadoc
PopupIconChooserPopupIconChooser borrows all of its functionality from IconPopupButton.Classcytoscape.visual.uiCytoScapejavadoc
PopupObjectPositionChooserClasscytoscape.visual.uiCytoScapejavadoc
PopupStringChooserAn input dialog for strings, ints, and doubles.Classcytoscape.visual.uiCytoScapejavadoc
PopupTextAreaClasscytoscape.dialogsCytoScapejavadoc
Positionenum Positionextends EnumConstants represent position of graphics objects.Classginy.viewCytoScapejavadoc
PosixParserThe class PosixParser provides an implementation of theVersion:$Revision: 155404 $Author:John Keyes (john at integralsource.Classorg.apache.commons.cliCytoScapejavadoc
PreferenceActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
PreferencesDialogClasscytoscape.dialogs.preferencesCytoScapejavadoc
PreferenceTableModelClasscytoscape.dialogs.preferencesCytoScapejavadoc
PreferenceValueDialogClasscytoscape.dialogs.preferencesCytoScapejavadoc
PrimesGeneratorClasscytoscape.util.intr.testCytoScapejavadoc
PrintActionClasscytoscape.actionsCytoScapejavadoc
PrintLODClassding.viewCytoScapejavadoc
ProductClassorg.cytoscape.equations.builtinsCytoScapejavadoc
PropUtilA stateless utility class that makes it easy to parse int and boolean values from a Properties object.Classcytoscape.utilCytoScapejavadoc
ProxyHandlerClasscytoscape.utilCytoScapejavadoc
ProxyServerActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ProxyServerDialogClasscytoscape.dialogs.preferencesCytoScapejavadoc
PSExporterClasscytoscape.util.exportCytoScapejavadoc
RadiansClassorg.cytoscape.equations.builtinsCytoScapejavadoc
RandomColorListenerUser wants to Seed the Discrete Mapper with Random Color Values.Classcytoscape.visual.mappings.discreteCytoScapejavadoc
RangeValueCalculatorInterfacecytoscape.visual.mappingsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

RangeValueCalculatorFactoryInterfacecytoscape.visual.mappingsCytoScapejavadoc
RangeValueCalculatorFactoryImplConstructor SummaryRangeValueCalculatorFactoryImpl()> Classcytoscape.visual.mappingsCytoScapejavadoc
RecentlyOpenedTrackerA class to keep track of a short list of recently opened URLs.Classcytoscape.utilCytoScapejavadoc
RectangleNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
RedoActionAn action that calls redo for the most recent edit in the undoable edit stack.Classcytoscape.util.undoCytoScapejavadoc
RedrawTaskClasscytoscape.visual.uiCytoScapejavadoc
RenderingContextInterfacecytoscape.visual.customgraphicCytoScapejavadoc
RepeatedAllRootGraphMethodsTestClassfing.model.testCytoScapejavadoc
RestoreImageTaskClasscytoscape.visual.customgraphicCytoScapejavadoc
RightClassorg.cytoscape.equations.builtinsCytoScapejavadoc
RootGraph A graph model consisting of nodes and the edges between them.Interfaceginy.modelCytoScapejavadoc
RootGraphAddRemoveTestClassfing.model.testCytoScapejavadoc
RootGraphChangeEventThe event source must be the RootGraph that changed.Classginy.modelCytoScapejavadoc
RootGraphChangeListenerInterfaceginy.modelCytoScapejavadoc
RootGraphPerformanceTestClassfing.model.testCytoScapejavadoc
RotateSelectedNodesActionRotates the given selection by the specified amount.Classcytoscape.actionsCytoScapejavadoc
RoundClassorg.cytoscape.equations.builtinsCytoScapejavadoc
RoundedRectangleNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
RTreeAn in-memory R-tree over real numbers in two dimensions.Classcytoscape.geom.rtreeCytoScapejavadoc
RTreeQueryPerformanceClasscytoscape.geom.rtree.testCytoScapejavadoc
RTreeSerializationPerformanceClasscytoscape.geom.rtree.testCytoScapejavadoc
RTreeUpdatePerformanceClasscytoscape.geom.rtree.testCytoScapejavadoc
RunBareBonesIllustrates how to execute a sample task via the TaskManager.Classcytoscape.task.sampleCytoScapejavadoc
RunSampleTaskRuns the Sample Task and demonstrate various UI options.Classcytoscape.task.sampleCytoScapejavadoc
SampleTaskSample Task, used to illustrate the Task Framework.Classcytoscape.task.sampleCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

SanityTestClassding.view.testCytoScapejavadoc
SaveImageTaskClasscytoscape.visual.customgraphicCytoScapejavadoc
SaveSessionActionSave Session action.Classcytoscape.actionsCytoScapejavadoc
SaveSessionAsActionSame as SaveSessionAction, but always opens file chooser.Classcytoscape.actionsCytoScapejavadoc
ScalerInterfacecytoscape.utilCytoScapejavadoc
ScalerFactoryClasscytoscape.utilCytoScapejavadoc
ScalingMethodenum ScalingMethodextends EnumEnum Constant SummaryLINEAR_LOWERClasscytoscape.utilCytoScapejavadoc
SConvNodeClassorg.cytoscape.equations.parse_treeCytoScapejavadoc
SelectAdjacentEdgesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
SelectAllActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
SelectAllEdgesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
SelectAllNodesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
SelectConnectedNodesActionselect every node connected to the current selected edges.Classcytoscape.actionsCytoScapejavadoc
SelectedEdgesJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
SelectedNodesJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
SelectEventEvents that are fired when the selected state of a Node or Edge, or a group of Nodes or Edges, is changed.Classcytoscape.dataCytoScapejavadoc
SelectEventListenerListener for SelectEvents fired by a SelectFilter object.Interfacecytoscape.dataCytoScapejavadoc
SelectFilterThis class implements the ability to set the selected state of every node or edge in a GraphPerspective.Classcytoscape.dataCytoScapejavadoc
SelectFirstNeighborsActionselect every first neighbor (directly connected nodes) of the currentlySee Also:Serialized FormClasscytoscape.actionsCytoScapejavadoc
SelectionModeActionClasscytoscape.actionsCytoScapejavadoc
SemanticsThis class defines names for certain data attributes that are commonly used within Cytoscape.Classcytoscape.dataCytoScapejavadoc
SeparateArrowStrokeFields inherited from class cytoscape.Classcytoscape.visual.strokesCytoScapejavadoc
ServerJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
SessionStateJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
SetNestedNetworkDialogClasscytoscape.dialogsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

SettingsActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.layout.uiCytoScapejavadoc
SetVisualPropertiesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ShapeCellRendererClasscytoscape.visual.ui.editors.discreteCytoScapejavadoc
ShapeStrokeClasscytoscape.visual.strokesCytoScapejavadoc
ShowAllActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ShowCustomGraphicsManagerActionDisplay Custom Graphics Manager GUI.Classcytoscape.actionsCytoScapejavadoc
ShowGraphicsDetailsActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ShrinkExpandGraphThis class shifts the nodes to shrink or expand the graph: it averages the coordinates of all the nodes to find the centerClasscytoscape.dialogsCytoScapejavadoc
ShrinkExpandGraphUIClasscytoscape.dialogsCytoScapejavadoc
SIFFileFilterFileFilter for Reading in Cytoscape SIF Files.Classcytoscape.utilCytoScapejavadoc
SignClassorg.cytoscape.equations.builtinsCytoScapejavadoc
SinClassorg.cytoscape.equations.builtinsCytoScapejavadoc
SineWaveStrokeFields inherited from class cytoscape.Classcytoscape.visual.strokesCytoScapejavadoc
SinhClassorg.cytoscape.equations.builtinsCytoScapejavadoc
SListClassorg.cytoscape.equations.builtinsCytoScapejavadoc
SolidStrokeFields inherited from class java.Classcytoscape.visual.strokesCytoScapejavadoc
SpacialEntry2DEnumeratorAn enumeration over a set of entries in a SpacialIndex2D structure.Interfacecytoscape.geom.spacialCytoScapejavadoc
SpacialIndex2DA spacial index for objects in two dimensions.Interfacecytoscape.geom.spacialCytoScapejavadoc
SqrtClassorg.cytoscape.equations.builtinsCytoScapejavadoc
StaticLayoutMenuStaticLayoutMenu provides a simple menu item to be added to a layoutSee Also:Serialized FormClasscytoscape.layout.uiCytoScapejavadoc
statusClasscytoscape.data.serversCytoScapejavadoc
StDevClassorg.cytoscape.equations.builtinsCytoScapejavadoc
StraightenSelectedEdgesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
StringConstantNodeA node in the parse tree representing an integer constant.Classorg.cytoscape.equations.parse_treeCytoScapejavadoc
StringListClassorg.cytoscape.equationsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

StringParser simply returning the supplied argument.Classcytoscape.visual.parsersCytoScapejavadoc
StringRangeValueCalculatorClasscytoscape.visual.mappings.rangecalculatorsCytoScapejavadoc
StringUtilsMisc Utilities for Formatting Times and Strings.Classcytoscape.task.uiCytoScapejavadoc
StringWrapClasscytoscape.task.utilCytoScapejavadoc
SubjectBaseAbstract Base Class for Subject in the Subject / Observer Pattern.Classcytoscape.visualCytoScapejavadoc
SubstituteClassorg.cytoscape.equations.builtinsCytoScapejavadoc
SumClassorg.cytoscape.equations.builtinsCytoScapejavadoc
SVGExporterSVG exporter by the batik library.Classcytoscape.util.exportCytoScapejavadoc
SwingWorkerThis is the 3rd version of SwingWorker (also known as SwingWorker 3), an abstract class that you subclass toClasscytoscape.utilCytoScapejavadoc
SynonymReaderThe purpose of this class is to convert a 'gene_association.Classcytoscape.cruft.oboCytoScapejavadoc
SynonymTesterClasscytoscape.cruft.obo.testCytoScapejavadoc
TaggableInterfacecytoscape.visual.customgraphicCytoScapejavadoc
TanClassorg.cytoscape.equations.builtinsCytoScapejavadoc
TanhClassorg.cytoscape.equations.builtinsCytoScapejavadoc
TaskRepresents a task that can be terminated prematurely by the same entity that started the task - tasks are started withInterfacecytoscape.taskCytoScapejavadoc
TaskManagerUtility class used to execute tasks and visually monitor their progress.Classcytoscape.task.utilCytoScapejavadoc
TaskMonitorInterface for monitoring the progress of a task.Interfacecytoscape.taskCytoScapejavadoc
TeeArrowClasscytoscape.render.immed.arrowCytoScapejavadoc
TextClassorg.cytoscape.equations.builtinsCytoScapejavadoc
TextFileReaderClasscytoscape.data.readersCytoScapejavadoc
TextHttpReaderClasscytoscape.data.readersCytoScapejavadoc
TextJarReaderClasscytoscape.data.readersCytoScapejavadoc
TexturePaintFactoryClasscytoscape.visual.customgraphic.paintCytoScapejavadoc
ThemeInfoNested Class SummaryNested classes/interfaces inherited from class cytoscape.Classcytoscape.pluginCytoScapejavadoc
Thesaurustodo (pshannon, 25 oct 2002): there may be multiple canonicalNames for the same common name.Classcytoscape.data.synonymsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

ThesaurusFlatFileReaderRead synonyms from flat file.Classcytoscape.data.synonyms.readersCytoScapejavadoc
TodayClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ToggleVisualMapperActionThis class implements two menu items that allow enabling and disabling theSee Also:Serialized FormClasscytoscape.actionsCytoScapejavadoc
Tokenenum Tokenextends EnumEnum Constant SummaryAMPERSANDClassorg.cytoscape.equationsCytoScapejavadoc
TokeniserClassorg.cytoscape.equationsCytoScapejavadoc
TopoGraphNodeRepresents a node in a topological graph.Interfacecytoscape.utilCytoScapejavadoc
TopologicalSort See for example http://en.Classcytoscape.utilCytoScapejavadoc
TrackerExceptionSee Also:Serialized FormConstructor SummaryTrackerException()Classcytoscape.pluginCytoScapejavadoc
TransformClasscytoscape.utilCytoScapejavadoc
TreeCellRendererClasscytoscape.dialogs.pluginsCytoScapejavadoc
TreeCellRendererClasscytoscape.viewCytoScapejavadoc
TreeNodeSee Also:Serialized FormFields inherited from class javax.Classcytoscape.dialogs.pluginsCytoScapejavadoc
TreeTableModelTreeTableModel is the model used by a JTreeTable.Interfacecytoscape.util.swingCytoScapejavadoc
TreeTableModelAdapterThis is a wrapper class takes a TreeTableModel and implements the table model interface.Classcytoscape.util.swingCytoScapejavadoc
TriangleNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
TriangleThumbRendererClasscytoscape.visual.ui.editors.continuousCytoScapejavadoc
TripleExtract partial graph structure.Classcytoscape.data.ontologyCytoScapejavadoc
TruncClassorg.cytoscape.equations.builtinsCytoScapejavadoc
TunableTunables are typed objects that maintain properties and an easy way to generate a settings panel to allow user manipulationClasscytoscape.layoutCytoScapejavadoc
TunableListenerThe TunableListener interface provides a way to encapsulate CyLayoutAlgorithm property and settings values.Interfacecytoscape.layoutCytoScapejavadoc
TypeHandlerThis is a temporary implementation.Classorg.apache.commons.cliCytoScapejavadoc
UnaryOpNodeA node in the parse tree representing a unary operator application.Classorg.cytoscape.equations.parse_treeCytoScapejavadoc
UndoRudimentary support for undo.ClassundoCytoScapejavadoc
UndoActionAn action that calls undo for the most recent edit in the undoable edit stack.Classcytoscape.util.undoCytoScapejavadoc
UnHideSelectedActionSee Also:Serialized FormFields inherited from class javax.Classcytoscape.actionsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

UnHideSelectedEdgesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
UnHideSelectedNodesActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
UnifiedNetworkImportDialogDefault GUI component for network import web service clients.Classcytoscape.data.webservice.uiCytoScapejavadoc
UnrecognizedOptionExceptionException thrown during parsing signalling an unrecognizedVersion:$Revision: 155404 $Author:bob mcwhiter (bob @ werken.Classorg.apache.commons.cliCytoScapejavadoc
UpperClassorg.cytoscape.equations.builtinsCytoScapejavadoc
URLImageCustomGraphicsFields inherited from class cytoscape.Classcytoscape.visual.customgraphic.impl.bitmapCytoScapejavadoc
URLImageCustomGraphicsParserCreate instance of URLImageCustomGraphics object from String.Classcytoscape.visual.customgraphicCytoScapejavadoc
URLUtilClasscytoscape.utilCytoScapejavadoc
ValueClassorg.cytoscape.equations.builtinsCytoScapejavadoc
ValueParserInterfacecytoscape.visual.parsersCytoScapejavadoc
ValueSelectDialogVisual Property selector for discrete valuesAuthor:konoSee Also:Serialized FormClasscytoscape.visual.uiCytoScapejavadoc
ValueToStringConverterProvide special type of toString for the given class.Interfacecytoscape.visual.converterCytoScapejavadoc
ValueToStringConverterManagerReplacement for ObjectToString.Classcytoscape.visual.converterCytoScapejavadoc
VarClassorg.cytoscape.equations.builtinsCytoScapejavadoc
VectorCustomGraphicsInterfacecytoscape.visual.customgraphic.impl.vectorCytoScapejavadoc
VeeNodeShapeClasscytoscape.render.immed.nodeshapeCytoScapejavadoc
VerticalSlashStrokeNested Class SummaryNested classes/interfaces inherited from class cytoscape.Classcytoscape.visual.strokesCytoScapejavadoc
ViewableNodesJava class for anonymous complex type.Classcytoscape.generatedCytoScapejavadoc
ViewChangeEditA Ding specific undoable edit.Classding.viewCytoScapejavadoc
ViewportChangeListenerInterfaceding.viewCytoScapejavadoc
VisualMappingManagerTop-level class for controlling the visual appearance of nodes and edges according to data attributes, as well as some global visual attributes.Classcytoscape.visualCytoScapejavadoc
VisualPropertyRepresents a visual property.Interfacecytoscape.visualCytoScapejavadoc
VisualPropertyDependencyDefine dependency of visual properties.Interfacecytoscape.visualCytoScapejavadoc
VisualPropertyIconIcon created from Shape object passed from rendering engine.Classcytoscape.visual.ui.iconCytoScapejavadoc
VisualPropertyTypeenum VisualPropertyTypeextends EnumEnum for calculator types.Classcytoscape.visualCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

VisualStyleThis class encapsulates a full set of visual mapping specifications for Cytoscape.Classcytoscape.visualCytoScapejavadoc
VisualStyleBuilderBased on the graph/node/edge view information, build new Visual Style.Classcytoscape.data.readersCytoScapejavadoc
VizMapBypassNetworkListenerAdds NodeView and EdgeView vizmap bypass listeners to network views as the views are created.Classcytoscape.visual.uiCytoScapejavadoc
VizMapperMainPanelNew VizMapper UI main panel.Classcytoscape.visual.uiCytoScapejavadoc
VizMapperPropertyClasscytoscape.visual.uiCytoScapejavadoc
VizMapperTrackRendererInterfacecytoscape.visual.ui.editors.continuousCytoScapejavadoc
WebServiceClientWeb service client wrapper for Cytoscape.Interfacecytoscape.data.webserviceCytoScapejavadoc
WebServiceClientGUIWeb service client which has custom component should implements this interface.Interfacecytoscape.data.webservice.uiCytoScapejavadoc
WebServiceClientImplAbstract class for all web service clients.Classcytoscape.data.webserviceCytoScapejavadoc
WebServiceClientImplWithGUIClasscytoscape.data.webserviceCytoScapejavadoc
WebServiceClientManagerWeb Service Client Manager manages available web service clients in Cytoscape.Classcytoscape.data.webserviceCytoScapejavadoc
WebServiceContextMenuContext menu for web service clients.Classcytoscape.data.webservice.uiCytoScapejavadoc
WebServiceContextMenuListenerClasscytoscape.data.webservice.uiCytoScapejavadoc
WebServiceNetworkImportActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
WebServiceThemeInstallClasscytoscape.data.webservice.utilCytoScapejavadoc
WebstartExceptionThis exception is used when methods that can't be used from the PluginManager if webstart is running are called.Classcytoscape.pluginCytoScapejavadoc
WidestStringComboBoxModel This ComboBoxModel tracks the widest string getLabel(Object anObject) should be overridden to derive the String fromClasscytoscape.util.swingCytoScapejavadoc
WidestStringComboBoxPopupMenuListener Listener that can be attached to a JComboBox.Classcytoscape.util.swingCytoScapejavadoc
WidestStringProvider Marker interface to decouple WidestStringComboBoxPopupMenuListener from WidestStringComboBoxModel.Interfacecytoscape.util.swingCytoScapejavadoc
WidthStrokeA simple extension of Stroke that allows Stroke objects to be coupled with LineStyle enum values and allows the width of theInterfacecytoscape.visual.strokesCytoScapejavadoc
WindowUtilitiesWindowUtilities keeps track of open windows and may close down the JVM when all primary windows are closed (see #setExitJVMWhenAllWindowsCloseClasscytoscape.util.shadegrownCytoScapejavadoc
WSImportResultDialogClasscytoscape.data.webservice.uiCytoScapejavadoc
XGMMLExceptionException for XGMML Reader.Classcytoscape.data.readersCytoScapejavadoc
XGMMLFileFilterFileFilter for Reading in XGMML Files.Classcytoscape.utilCytoScapejavadoc
XGMMLReader This version is Metanode-compatible.Classcytoscape.data.readersCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner

XGMMLWriterWrite network and attributes in XGMML format and marshall it in a streme.Classcytoscape.data.writersCytoScapejavadoc
YValueLegendPanelClasscytoscape.visual.ui.editors.continuousCytoScapejavadoc
ZeroStrokeRather than handle strokes of width 0 for all implementations of WidthStroke, use this wrapper class that, when the width is less than or equal to 0 aClasscytoscape.visual.strokesCytoScapejavadoc
ZigzagStrokeClasscytoscape.visual.strokesCytoScapejavadoc
ZipUtilCompression-related methods mainly for Session Writer.Classcytoscape.utilCytoScapejavadoc
ZoomActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc
ZoomSelectedActionSee Also:Serialized FormFields inherited from class cytoscape.Classcytoscape.actionsCytoScapejavadoc

Subscribe to Java News and Posts. Get latest updates and posts on Java from Buggybread.com
Enter your email address:
Delivered by FeedBurner



comments powered by Disqus