Name | Description | Type | Package | Framework |
A_Image5D_test | | Class | | Fiji |
|
Abort | Throwing an instance of this class causes (silent) termination of the main compiler method. | Class | com.sun.tools.javac.util | Fiji |
|
About | Displays a small information dialog about the Bio-Formats Plugins package. | Class | loci.plugins | Fiji |
|
About_RATS | | Class | | Fiji |
|
AboutDialog | | Class | edfgui | Fiji |
|
AboutDialog | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
Abs | | Class | imglib.ops.operator.unary | Fiji |
|
Abs | | Class | script.imglib.math | Fiji |
|
AbstractAffine3D | | Class | script.imglib.algorithm.fn | Fiji |
|
AbstractAffineModelChunk | | Class | edu.utexas.clm.archipelago.ijsupport | Fiji |
|
AbstractAffineTile2D | | Class | mpicbg.trakem2.align | Fiji |
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AbstractAnimator | Mother abstract class for animators that can animate the current view in a ViewerFrame instance. | Class | bdv.viewer.animate | Fiji |
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AbstractAnnotation | Abstract class dedicated to draw overlayed annotations on a OverlayedImageCanvas. | Class | fiji.util.gui | Fiji |
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AbstractAnnotationValueVisitor6 | A skeletal visitor for annotation values with default behavior appropriate for the RELEASE_6 | Class | javax.lang.model.util | Fiji |
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AbstractBlockMatching | | Class | mpicbg.ij.plugin | Fiji |
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AbstractDetection | | Class | mpicbg.spim.registration.detection | Fiji |
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AbstractDialog | | Class | edfgui | Fiji |
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AbstractEdfAlgorithm | | Class | edf | Fiji |
|
AbstractElementVisitor6 | A skeletal visitor of program elements with default behavior appropriate for the RELEASE_6 | Class | javax.lang.model.util | Fiji |
|
AbstractFeatureGrapher | | Class | fiji.plugin.trackmate.features | Fiji |
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AbstractImgFactoryImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
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AbstractImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
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AbstractLayerAlignmentParam | | Class | mpicbg.trakem2.align | Fiji |
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AbstractLegacyViewerImgLoader | | Class | bdv.spimdata.legacy | Fiji |
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AbstractNamedAction | | Class | bdv.util | Fiji |
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AbstractNormalize | | Class | script.imglib.algorithm.fn | Fiji |
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AbstractOffscreenThread | To be used in combination with the AbstractRepaintThread, as a thread to create graphics offscreen. | Class | ini.trakem2.display | Fiji |
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AbstractPanorama_View | | Class | mpicbg.panorama | Fiji |
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AbstractPointDescriptor | | Class | mpicbg.pointdescriptor | Fiji |
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AbstractProcessor | An abstract annotation processor designed to be a convenient superclass for most concrete annotation processors. | Class | javax.annotation.processing | Fiji |
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AbstractProvider | | Class | fiji.plugin.trackmate.providers | Fiji |
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AbstractRegionalExtremaFinder | | Class | mpicbg.imglib.algorithm.extremafinder | Fiji |
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AbstractRepaintThread | | Class | ini.trakem2.display | Fiji |
|
AbstractSemiAutoTracker | A class made to perform semi-automated tracking of spots in TrackMate & The user has to select one spot, one a meaningful location. | Class | fiji.plugin.trackmate.detection.semiauto | Fiji |
|
AbstractSequenceDescription | A SPIM sequence consisting of a list of timepoints and a list of view setups. | Class | mpicbg.spim.data.generic.sequence | Fiji |
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AbstractSequenceDescriptionUtils | | Class | mpicbg.spim.data.generic.sequence | Fiji |
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AbstractSortedGrayLevelIterator | Iterate over all pixels ordered by their gray levelAuthor:Steffen Jaensch, Steffen Jaensch | Class | mpicbg.imglib.cursor.special | Fiji |
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AbstractSpecialCursor | This abstract cursor offer facilities for specialized cursor that are based on a LocalizableByDimCursor whose iteration domain is imposed. | Class | mpicbg.imglib.cursor.special | Fiji |
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AbstractSpimData | | Class | mpicbg.spim.data.generic | Fiji |
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AbstractSpimSource | | Class | bdv | Fiji |
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AbstractTMAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
AbstractTool | | Class | fiji.tool | Fiji |
|
AbstractTrackingTool | | Class | fiji.tool | Fiji |
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AbstractTrackMateModelView | An abstract class for spot displayers, that can overlay detected spots and tracks on top of the image data. | Class | fiji.plugin.trackmate.visualization | Fiji |
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AbstractTransformAnimator | Mother abstract class for animators that animate the current view in a ViewerFrame instance by modifying the viewer transform. | Class | bdv.viewer.animate | Fiji |
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AbstractTreeTransferHandler | Adapted from freely available code by DeuDeu from http://forum. | Class | ini.trakem2.tree | Fiji |
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AbstractTypeVisitor6 | A skeletal visitor of types with default behavior appropriate for the version 6 language level. | Class | javax.lang.model.util | Fiji |
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AbstractVector | | Class | mpicbg.imglib.cursor.vector | Fiji |
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AbstractViewerSetupImgLoader | | Class | bdv | Fiji |
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AbstractVolatileArray | A ShortArray with an isValid() flag. | Class | net.imglib2.img.basictypeaccess.volatiles.array | Fiji |
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AbstractVolatileNativeNumericType | Abstract base class for VolatileNumericTypes that wrap native NumericTypes. | Class | net.imglib2.type.volatiles | Fiji |
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AbstractVolatileNativeRealType | Abstract base class for VolatileRealTypes that wrapAuthor:Tobias Pietzsch Class | net.imglib2.type.volatiles | Fiji | |
|
Access | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Interface | imageware | Fiji |
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AccumulateProjector | | Class | bdv.viewer.render | Fiji |
|
AccumulateProjectorARGB | | Class | bdv.viewer.render | Fiji |
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AccumulateProjectorFactory | | Interface | bdv.viewer.render | Fiji |
|
Accumulator | A class allowing an easy accumulation of values visited by a TwinCursor. | Class | algorithms | Fiji |
|
ACos | | Class | script.imglib.math | Fiji |
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ActionChooserDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
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ActionChooserPanel | | Class | fiji.plugin.trackmate.gui.panels | Fiji |
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ActionListenablePanel | | Class | fiji.plugin.trackmate.gui.panels | Fiji |
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ActionProvider | | Class | fiji.plugin.trackmate.providers | Fiji |
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ActiveContours | This class provides the getDeltaPhi function to the SparseFieldLevelSet: deltaPhi = - DELTA_T * image_term * (advection * ADVECTION_FORCE + curvature * CURVATURE_EPSILON) | Class | levelsets.algorithm | Fiji |
|
Adapter | This class just hands off to the ImageJ Updater The Fiji Updater moved to a new home: ImageJ2. | Class | fiji.updater | Fiji |
|
AdaptiveNonMaximalSuppression | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
|
Add | | Class | imglib.ops.operator.binary | Fiji |
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Add | | Class | script.imglib.math | Fiji |
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Add_Empty_Channel | | Class | | Fiji |
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Add_Empty_Frame | | Class | video2 | Fiji |
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Add_Empty_Slice | | Class | | Fiji |
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AddARGBComposite | | Class | ini.trakem2.display.graphics | Fiji |
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AddConstant | | Class | imglib.ops.operator.unary | Fiji |
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AddNoise | | Class | imglib.ops.operator.unary | Fiji |
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AdjustInput | | Class | mpicbg.spim.postprocessing.deconvolution2 | Fiji |
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AdjustInput | | Class | spim.process.fusion.deconvolution | Fiji |
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AdvancedDialog | | Class | edfgui | Fiji |
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Affine | Affine transforms an image using different interpolation schemes. | Class | imagescience.transform | Fiji |
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Affine2D | | Class | script.imglib.algorithm | Fiji |
|
Affine3D | Performs a mathematically correct transformation of an image. | Class | script.imglib.algorithm | Fiji |
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Affine3DHelpers | Helpers to extract parts (rotation, scale, etc) from AffineTransform3D. | Class | bdv.util | Fiji |
|
Affine_From_Landmarks | | Class | landmarks | Fiji |
|
AffineFromLandmarks | | Class | landmarks | Fiji |
|
AffineModel2D | | Class | mpicbg.trakem2.transform | Fiji |
|
AffineModel3D | | Class | mpicbg.trakem2.transform | Fiji |
|
AffineTile2D | | Class | mpicbg.trakem2.align | Fiji |
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AffineTransform3DJsonSerializer | | Class | bdv.img.remote | Fiji |
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AffineTransformMode | | Class | ini.trakem2.display | Fiji |
|
Albert_Test | | Class | tracing | Fiji |
|
Algorithm | An algorithm is an abstraction of techniques like the calculation of the Persons coefficient or Li'S ICQ. | Class | algorithms | Fiji |
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Algorithm | | Interface | mpicbg.imglib.algorithm | Fiji |
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AlgorithmUtil | | Class | script.imglib.algorithm.fn | Fiji |
|
Align | A collection of methods regarding SIFT-based alignment TODO Bring the methods and tasks into a class for each method and clean up this mess. | Class | mpicbg.trakem2.align | Fiji |
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Align_Image | Select two images with a Line ROI in each, and rotate/translate/scale one to Stacks are not explicitly supported, but a macro can easily use this plugin | Class | | Fiji |
|
AlignLayersTask | Register a range of layers using linear or non-linear transformations. | Class | mpicbg.trakem2.align | Fiji |
|
AlignmentUtils | | Class | mpicbg.trakem2.align | Fiji |
|
AlignTask | Methods collection to be called from the GUI for alignment tasks. | Class | mpicbg.trakem2.align | Fiji |
|
AllConnectedComponents | Label all 8-connected components of a binary imageAuthor:Lee Kamentsky | Class | mpicbg.imglib.algorithm.labeling | Fiji |
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AllKnownFilter | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
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AllToAllRegistration | | Class | spim.process.interestpointregistration.optimizationtypes | Fiji |
|
AllToAllRegistrationWithRange | | Class | spim.process.interestpointregistration.optimizationtypes | Fiji |
|
Alpha | | Class | script.imglib.color | Fiji |
|
AlphanumComparator | The Alphanum Algorithm is an improved sorting algorithm for strings containing numbers. | Class | fiji.plugin.trackmate.util | Fiji |
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AlternateViewer | | Class | view5d | Fiji |
|
AmiraImporter | Parses an amira labelfield and imports the labels as AreaList instances into the project tree. | Class | ini.trakem2.io | Fiji |
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AmiraMeshDecoder | | Class | amira | Fiji |
|
AmiraMeshEncoder | | Class | amira | Fiji |
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AmiraMeshReader_ | | Class | | Fiji |
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AmiraMeshWriter_ | | Class | | Fiji |
|
AmiraParameters | | Class | amira | Fiji |
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AmiraSurface | | Class | isosurface | Fiji |
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AmiraTable | | Class | amira | Fiji |
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AmiraTableEncoder | | Class | amira | Fiji |
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AmiraTableWriter_ | | Class | | Fiji |
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Analyse_Particles | This plugin detectes sub-diffraction particles in a sequence of images, it is the main plugin for the QuickPALM package. | Class | QuickPALM | Fiji |
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Analyze_Reader | This plugin loads Analyze format files. | Class | | Fiji |
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Analyze_Writer | | Class | | Fiji |
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AnalyzeSkeleton_ | Main class of the ImageJ/Fiji plugin for skeleton analysis. | Class | sc.fiji.analyzeSkeleton | Fiji |
|
AnalyzeTracings_ | | Class | tracing | Fiji |
|
And | | Class | imglib.ops.condition | Fiji |
|
And | | Class | imglib.ops.operator.binary | Fiji |
|
And | | Class | script.imglib.math | Fiji |
|
AndConstant | | Class | imglib.ops.operator.unary | Fiji |
|
AnElement | | Class | view5d | Fiji |
|
Angle | Defines an angle which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
|
Animated_Gif_Reader | | Class | io | Fiji |
|
Anisotropic_Diffusion_2D | | Class | anisotropic_diffusion | Fiji |
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AnisotropicDiffusion | Perona & Malik Anisotropic diffusion This algorithm implements the so-called anisotropic diffusion scheme of Perona & Malik, 1990, | Class | mpicbg.imglib.algorithm.pde | Fiji |
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Annotate | Enter annotations on symbols. | Class | com.sun.tools.javac.comp | Fiji |
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AnnotationMirror | Represents an annotation. | Interface | javax.lang.model.element | Fiji |
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AnnotationProcessingError | Error thrown for problems encountered during annotation processing. | Class | com.sun.tools.javac.processing | Fiji |
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AnnotationProxyMaker | A generator of dynamic proxy implementations of java. | Class | com.sun.tools.javac.model | Fiji |
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AnnotationTree | A tree node for an annotation. | Interface | com.sun.source.tree | Fiji |
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AnnotationValue | Represents a value of an annotation type element. | Interface | javax.lang.model.element | Fiji |
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AnnotationValueVisitor | A visitor of the values of annotation type elements, using a variant of the visitor design pattern. | Interface | javax.lang.model.element | Fiji |
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APNGTranslator | Container class for translators between OME and APNG formats. | Class | io.scif.ome.translators | Fiji |
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AppearanceCreator | | Class | octree | Fiji |
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AppearanceCreator | This class is a helper class whose main task is to create Appearance objects for a specified axis and direction. | Class | voltex | Fiji |
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AppendSpimData2 | | Class | spim.process.fusion.export | Fiji |
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AppendSpimData2HDF5 | | Class | spim.process.fusion.export | Fiji |
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Apply_External_Transformation | | Class | fiji.plugin | Fiji |
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Apply_Transformation | | Class | spim.fiji.plugin | Fiji |
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ApplyParameters | | Class | spim.fiji.plugin.apply | Fiji |
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ApplyTransformationPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
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ArchipelagoClient | | Class | edu.utexas.clm.archipelago.network.client | Fiji |
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ArchipelagoFuture | | Class | edu.utexas.clm.archipelago.compute | Fiji |
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ArchipelagoServer | | Class | edu.utexas.clm.archipelago.network.server | Fiji |
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ArchipelagoUI | | Interface | edu.utexas.clm.archipelago.ui | Fiji |
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ArchipelagoUtils | | Class | edu.utexas.archipelago | Fiji |
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ArchiveClient | | Class | client | Fiji |
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AreaCalculations | | Class | fiji.geom | Fiji |
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AreaContainer | | Interface | ini.trakem2.display | Fiji |
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AreaList | A list of brush painted areas similar to a set of labelfields in Amira. | Class | ini.trakem2.display | Fiji |
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AreaList_Crop | | Class | edu.utexas.clm.crop | Fiji |
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AreaListCrop | | Class | edu.utexas.clm.crop | Fiji |
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AreaListVolume | Wraps a list of Areas to be triangulated. | Class | ij3d | Fiji |
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AreaTree | | Class | ini.trakem2.display | Fiji |
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AreaUtils | | Class | ini.trakem2.utils | Fiji |
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AreaWrapper | | Class | ini.trakem2.display | Fiji |
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Array | | Class | mpicbg.imglib.container.array | Fiji |
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Array3D | | Class | mpicbg.imglib.container.array | Fiji |
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Array3DLocalizableByDimCursor | | Class | mpicbg.imglib.cursor.array | Fiji |
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Array3DLocalizableByDimOutOfBoundsCursor | | Class | mpicbg.imglib.cursor.array | Fiji |
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Array3DLocalizableCursor | | Class | mpicbg.imglib.cursor.array | Fiji |
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ArrayAccessTree | A tree node for an array access expression. | Interface | com.sun.source.tree | Fiji |
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ArrayBase | | Class | fiji.util | Fiji |
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ArrayContainerFactory | | Class | mpicbg.imglib.container.array | Fiji |
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ArrayConverter | Copyright: Copyright (c) 2006Version:1. | Class | mpi.fruitfly.general | Fiji |
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ArrayCursor | | Class | mpicbg.imglib.cursor.array | Fiji |
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ArrayDataAccess | | Interface | mpicbg.imglib.container.basictypecontainer.array | Fiji |
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ArrayLocalizableByDimCursor | | Class | mpicbg.imglib.cursor.array | Fiji |
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ArrayLocalizableByDimOutOfBoundsCursor | | Class | mpicbg.imglib.cursor.array | Fiji |
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ArrayLocalizableCursor | | Class | mpicbg.imglib.cursor.array | Fiji |
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ArrayLocalizablePlaneCursor | | Class | mpicbg.imglib.cursor.array | Fiji |
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ArrayType | Represents an array type. | Interface | javax.lang.model.type | Fiji |
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ArrayTypeTree | A tree node for an array type. | Interface | com.sun.source.tree | Fiji |
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Arrow | | Class | util | Fiji |
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ArrowDisplayer | | Interface | util | Fiji |
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ArrowOptionPanel | | Class | fiji.util | Fiji |
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ArrowShape | | Class | fiji.util | Fiji |
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ArrowTool | This plugin aims at being a convenient interactive tool for drawing arrow shape on ImageJ windows. | Class | fiji.util | Fiji |
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ASin | | Class | script.imglib.math | Fiji |
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Aspects | Contains aspect ratio or size information of up to 5D image elements. | Class | imagescience.image | Fiji |
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AssertTree | A tree node for an 'assert' statement. | Interface | com.sun.source.tree | Fiji |
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AssignmentAlgorithm | Just in case I want to try more than one implementation of the assignment algorithm. | Interface | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
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AssignmentProblem | An implementation of this: http://en. | Class | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
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AssignmentTree | A tree node for an assignment expression. | Interface | com.sun.source.tree | Fiji |
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AssignOperation | An AssignOperation computes values in an output image. | Class | imglib.ops.operation | Fiji |
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ATan | | Class | script.imglib.math | Fiji |
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ATan2 | | Class | script.imglib.math | Fiji |
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Attr | This is the main context-dependent analysis phase in GJC. | Class | com.sun.tools.javac.comp | Fiji |
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AttrContext | Contains information specific to the attribute and enter passes, to be used in place of the generic field in environments. | Class | com.sun.tools.javac.comp | Fiji |
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AttrContextEnv | Env specialized as Env This is NOT part of any supported API. | Class | com.sun.tools.javac.comp | Fiji |
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Attribute | An annotation value. | Class | com.sun.tools.javac.code | Fiji |
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AugmentedLandmarkWarp_ | | Class | vib | Fiji |
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AuthenticationException | | Class | edu.utexas.clm.archipelago.exception | Fiji |
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Auto_Local_Threshold | | Class | fiji.threshold | Fiji |
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Auto_Threshold | | Class | fiji.threshold | Fiji |
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Auto_Tracer | | Class | tracing | Fiji |
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AutoLabeller | | Class | oldsegmenters | Fiji |
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AutoLabellerNaive | | Class | oldsegmenters | Fiji |
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AutomaticAngleSetup | | Class | mpicbg.spim.preprocessing | Fiji |
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AutomaticBoundingBox | | Class | spim.process.fusion.boundingbox | Fiji |
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AutomaticReorientation | | Class | spim.process.fusion.boundingbox | Fiji |
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AutoPoint | | Class | tracing | Fiji |
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AutoSearchThread | | Class | tracing | Fiji |
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AutoThresholdRegression | A class implementing the automatic finding of a threshold used for Person colocalisation calculation. | Class | algorithms | Fiji |
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AutoTracerCanvas | | Class | tracing | Fiji |
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Average | | Class | imglib.ops.operator.binary | Fiji |
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Average | | Class | script.imglib.math | Fiji |
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Average_Color | | Class | | Fiji |
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Average_Images | | Class | vib | Fiji |
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Average_Torsten_Results | | Class | util | Fiji |
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AverageBrain | | Class | vib.app.module | Fiji |
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AverageBrain_ | | Class | vib | Fiji |
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AverageContent | | Class | mpicbg.spim.fusion | Fiji |
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AverageContentFactory | | Class | mpicbg.spim.fusion | Fiji |
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AveragePixelFusion | | Class | mpicbg.stitching.fusion | Fiji |
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AveragePixelFusionIgnoreZero | | Class | mpicbg.stitching.fusion | Fiji |
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AvgFunction | | Class | imglib.ops.function.pn | Fiji |
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Axes | Contains information about the activity of the coordinate axes of up to 5D image data objects. | Class | imagescience.image | Fiji |
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AxisConstants | This interface stores some common constants. | Interface | ij3d | Fiji |
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AxisLessThan | | Class | imglib.ops.condition | Fiji |
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Ball | | Class | ini.trakem2.display | Fiji |
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Balloon | | Class | balloonstructure | Fiji |
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BalloonPopulation | | Class | balloonstructure | Fiji |
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BalloonSegmentation_ | | Class | | Fiji |
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BalloonSequence | | Class | balloonstructure | Fiji |
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BandElement | | Class | levelsets.algorithm | Fiji |
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BandElementCache | A cache for BandElement objects - this avoids having to construct/destruct objects in algorithms that do frequent allocations/deallocations of this | Class | levelsets.algorithm | Fiji |
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Bandpass | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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BandpassFilter | | Class | script.imglib.algorithm | Fiji |
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BarChart | | Class | script.imglib.analysis | Fiji |
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BaseFileManager | Utility methods for building a filemanager. | Class | com.sun.tools.javac.util | Fiji |
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BaseFileObject | This is NOT part of any supported API. | Class | com.sun.tools.javac.file | Fiji |
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BasePairBitType | | Class | mpicbg.imglib.type.label | Fiji |
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BasePairCharType | | Class | mpicbg.imglib.type.label | Fiji |
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BasePairType | | Interface | mpicbg.imglib.type | Fiji |
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BasePairTypeDisplay | | Class | mpicbg.imglib.image.display | Fiji |
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BasicDetectorConfigurationPanel | | Class | fiji.plugin.trackmate.gui.panels.detector | Fiji |
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BasicDialog | | Class | edfgui | Fiji |
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BasicImgLoader | Provides images for a sequence. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
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BasicMultiResolutionImgLoader | A BasicImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
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BasicMultiResolutionSetupImgLoader | A BasicSetupImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
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BasicSetupImgLoader | Provides images for one setup of aAuthor:Tobias Pietzsch Interface | mpicbg.spim.data.generic.sequence | Fiji | |
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BasicViewDescription | | Class | mpicbg.spim.data.generic.sequence | Fiji |
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BasicViewSetup | An view setup is an Entity that may have a name, image size, and voxel size. | Class | mpicbg.spim.data.generic.sequence | Fiji |
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Batch_Weka_Segmentation | | Class | edu.utexas.archipelago.plugin | Fiji |
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BatchConverter | Batch Converter Class - Adapted from Wayne Rasband's Batch Converter plug-in. | Class | org.imagearchive.lsm.toolbox | Fiji |
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BatchDialog | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
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BatchFilter | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
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BatchLog_ | | Class | vib | Fiji |
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BatchOpener | This class contains methods I would like to see incorporated into HandleExtraFileTypes, or elsewhere. | Class | util | Fiji |
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BatchWekaSegmentation | | Class | edu.utexas.archipelago.segmentation | Fiji |
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BayesMVDeconvolution | | Class | mpicbg.spim.postprocessing.deconvolution2 | Fiji |
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BDVPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
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Bead | | Class | mpicbg.spim.registration.bead | Fiji |
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Bead_Registration | | Class | fiji.plugin | Fiji |
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BeadIdentification | | Class | mpicbg.spim.registration.bead | Fiji |
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BeadRegistration | | Class | mpicbg.spim.registration.bead | Fiji |
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BeadSegmentation | | Class | mpicbg.spim.registration.bead | Fiji |
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BeadStructure | | Class | mpicbg.spim.registration.bead | Fiji |
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BeadTransformGroup | | Class | mpicbg.spim.vis3d | Fiji |
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BeamSplitter | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
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Beaudetx | This class implements Beaudet differentiation in x direction. | Class | volume | Fiji |
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BehaviorCallback | | Interface | ij3d.behaviors | Fiji |
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Benchmark | | Interface | mpicbg.imglib.algorithm | Fiji |
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BenchmarkAlgorithm | This is a convenience implementation of an algorithm that implements Benchmark and Algorithm so that less code has to be re-implemented. | Class | mpicbg.imglib.algorithm | Fiji |
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BenesNamedPoint | | Class | vib | Fiji |
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BEPBBinBoundariesInference | | Class | inference | Fiji |
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BEPBInference | | Class | inference | Fiji |
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BEPBModelInference | | Class | inference | Fiji |
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BF | Miscellaneous plugins utility methods. | Class | loci.plugins | Fiji |
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BFVirtualStack | Subclass of VirtualStack that uses Bio-Formats to read planes on demand. | Class | loci.plugins.util | Fiji |
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BigBrother | Supervise all threads, and report uncaught exceptions. | Class | ini.trakem2.utils | Fiji |
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BigDataBrowserPlugIn | | Class | bdv.ij | Fiji |
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BigDataViewer | | Class | bdv | Fiji |
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BigDataViewerActions | | Class | bdv | Fiji |
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BigDataViewerBoundingBox | | Class | spim.process.fusion.boundingbox | Fiji |
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BigDataViewerPlugIn | | Class | bdv.ij | Fiji |
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BigDataViewerTransformationWindow | | Class | spim.fiji.plugin.apply | Fiji |
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BIJfft | This class implements a one-dimensional real->complex fast fourier transform Copyright (c) 1999-2004, Michael Abramoff. | Class | bijnum | Fiji |
|
BIJfht | This class implements the fast Hartley transform on matrices and vectors (real float matrices). | Class | bijnum | Fiji |
|
BIJfit | This class implements useful linear and polynomial regression Press, Flannery, Teukolsky, Vetterling, Numerical Recipes in C 2nd ed, Cambridge University Press, 1986 | Class | bijnum | Fiji |
|
BIJfunctions | This class implements useful numerical functions from Press, Flannery, Teukolsky, Vetterling, Numerical Recipes in C 2nd ed, Cambridge University Press, 1986 | Class | bijnum | Fiji |
|
BIJgifa | Does a maximization of images with maximum signal power and signal to noise ratio. | Class | bijnum | Fiji |
|
BIJJacobi | This class implements the jacobi function as a Java class. | Class | bijnum | Fiji |
|
BIJknn | k Nearest Neighborhood (brute-force) implementation. | Class | bijnum | Fiji |
|
BIJmatrix | eigenvectors and others. | Class | bijnum | Fiji |
|
BIJmi | Mutual infromation processing routines. | Class | bijnum | Fiji |
|
BIJpca | Principal component analysis (PCA) on 2-D sequences (ie. | Class | bijnum | Fiji |
|
BIJpowell | This class implements Powell's multidimensional optimization. | Class | bijnum | Fiji |
|
BIJShortMatrix | Simplified subset of BIJmatrix. | Class | bijnum | Fiji |
|
BIJstats | BIJ statistical methods inherited from MatLab. | Class | bijnum | Fiji |
|
BIJtransform | This class implements static transformation matrix operations for 2-D and 3-D transformation matrices. | Class | bijnum | Fiji |
|
BIJutil | Utilities to link BIJ things to ImageJ. | Class | bijnum | Fiji |
|
Bilateral_Filter | | Class | | Fiji |
|
BilateralFilter | | Class | vib | Fiji |
|
Binary_to_Point_Selection | This is a template for a plugin that requires one image to be opened, and takes it as parameter. | Class | fiji.selection | Fiji |
|
BinaryInterpolation2D | Given two binary images of the same dimensions, generate an interpolated image that sits somewhere | Class | ini.trakem2.imaging | Fiji |
|
BinaryInterpolation2D | Given two binary images of the same dimensions, generate an interpolated image that sits somewhere | Class | mpicbg.imglib.algorithm.labeling | Fiji |
|
BinaryInterpolator | | Class | vib | Fiji |
|
BinaryOperation | | Class | script.imglib.math.fn | Fiji |
|
BinaryOperator | | Interface | imglib.ops.operator | Fiji |
|
BinaryOperatorFunction | | Class | imglib.ops.function.p2 | Fiji |
|
BinaryTree | A tree node for a binary expression. | Interface | com.sun.source.tree | Fiji |
|
BinBoundariesComputation | | Class | inference | Fiji |
|
BinBoundariesInference | | Class | inference | Fiji |
|
BinClassificationInference | | Class | inference | Fiji |
|
Binomial | Binomial coefficientsVersion:$Id: Binomial. | Class | pal.math | Fiji |
|
BinomialGenerator | Binomial random number generator. | Class | imagescience.random | Fiji |
|
BioFormatsFormat | Wraps an ImageReader in a SCIFIO Format, allowing proprietary Bio-Formats readers to be used in SCIFIO-based applications. | Class | io.scif.bf | Fiji |
|
BioFormatsTranslator | Container class for translators between BioFormats and OME formats. | Class | io.scif.bf.ome | Fiji |
|
Biorad_Reader | Imports a Z series(image stack) from a Biorad MRC 600 confocal microscope. | Class | | Fiji |
|
Biorad_Writer | | Class | | Fiji |
|
BisectionStepper | Try to converge a threshold based on an update value condition. | Class | algorithms | Fiji |
|
BitAccess | | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
|
BitArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
BitDynamicContainer | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
BitDynamicContainerAccessor | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
Bits | A class for extensible, mutable bit sets. | Class | com.sun.tools.javac.util | Fiji |
|
BitStreamRead | | Class | customnode.u3d | Fiji |
|
BitStreamWrite | | Class | customnode.u3d | Fiji |
|
BitType | | Class | mpicbg.imglib.type.logic | Fiji |
|
BitTypeDisplay | | Class | mpicbg.imglib.image.display | Fiji |
|
Blas | | Class | bijnum | Fiji |
|
BleachCorrection | | Class | emblcmci | Fiji |
|
BleachCorrection_ExpoFit | | Class | emblcmci | Fiji |
|
BleachCorrection_MH | | Class | emblcmci | Fiji |
|
BleachCorrection_SimpleRatio | | Class | emblcmci | Fiji |
|
Blending | Utility functions for blending images together, to remove contrast seams. | Class | ini.trakem2.imaging | Fiji |
|
Blending | | Class | mpicbg.spim.fusion | Fiji |
|
Blending | RealRandomAccess that computed cosine-blending for a certain intervalAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.weights | Fiji |
|
BlendingFactory | | Class | mpicbg.spim.fusion | Fiji |
|
BlendingPixelFusion | | Class | mpicbg.stitching.fusion | Fiji |
|
BlendingPixelFusionIgnoreZero | | Class | mpicbg.stitching.fusion | Fiji |
|
BlendingRealRandomAccess | | Class | spim.process.fusion.weights | Fiji |
|
BlendingSimple | | Class | mpicbg.spim.fusion | Fiji |
|
BlendingSimpleFactory | | Class | mpicbg.spim.fusion | Fiji |
|
Blob_Segmentation_in_3D | A mouse listener for point-and-click segmentation and measurement of pixel clouds in an Image3DUniverse. | Class | ij3d.segmentation | Fiji |
|
Block | | Class | mpicbg.spim.postprocessing.deconvolution2 | Fiji |
|
Block | | Class | spim.process.cuda | Fiji |
|
BlockGenerator | | Interface | spim.process.cuda | Fiji |
|
BlockGeneratorFixedSizePrecise | | Class | spim.process.cuda | Fiji |
|
BlockGeneratorVariableSizePrecise | This BlockGenerator cares that the overlap within the image is accounted for and that an outofbounds strategy is taken into account. | Class | spim.process.cuda | Fiji |
|
BlockGeneratorVariableSizeSimple | This BlockGenerator only cares that the overlap within the image is accounted for, not about an outofbounds strategy. | Class | spim.process.cuda | Fiji |
|
BlockingFetchQueues | Queueing structure (intended for cells to be fetched). | Class | bdv.img.cache | Fiji |
|
BlockLogDetector | | Class | fiji.plugin.trackmate.detection | Fiji |
|
BlockLogDetectorConfigurationPanel | | Class | fiji.plugin.trackmate.gui.panels.detector | Fiji |
|
BlockLogDetectorFactory | | Class | fiji.plugin.trackmate.detection | Fiji |
|
BlockMatching_ExtractPoinRoi | | Class | mpicbg.ij.plugin | Fiji |
|
BlockMatching_TestParameters | | Class | mpicbg.ij.plugin | Fiji |
|
BlockMatchPairCallable | | Class | mpicbg.trakem2.align.concurrent | Fiji |
|
BlockTree | A tree node for a statement block. | Interface | com.sun.source.tree | Fiji |
|
Blue | | Class | script.imglib.color | Fiji |
|
BMPConstants | Provides constants used with BMP format. | Class | net.sf.image4j.codec.bmp | Fiji |
|
BMPDecoder | Decodes images in BMP format. | Class | net.sf.image4j.codec.bmp | Fiji |
|
BMPEncoder | Encodes images in BMP format. | Class | net.sf.image4j.codec.bmp | Fiji |
|
BMPImage | Contains a decoded BMP image, as well as information about the source encoded image. | Class | net.sf.image4j.codec.bmp | Fiji |
|
BMPTranslator | Container class for translators between OME and BMP formats. | Class | io.scif.ome.translators | Fiji |
|
Bookmarks | | Class | bdv.tools.bookmarks | Fiji |
|
BookmarksEditor | | Class | bdv.tools.bookmarks | Fiji |
|
BookmarkTextOverlayAnimator | Draw one line of text in the center or bottom right of the display. | Class | bdv.tools.bookmarks | Fiji |
|
Bookstein | | Class | math3d | Fiji |
|
Bookstein_From_Landmarks | | Class | landmarks | Fiji |
|
BooksteinFromLandmarks | | Class | landmarks | Fiji |
|
BooksteinTransform | | Class | vib.transforms | Fiji |
|
BooleanOption | A boolean option for one of the plugins. | Class | loci.plugins.prefs | Fiji |
|
BooleanType | | Interface | mpicbg.imglib.type | Fiji |
|
Bootstrap | Bootstrap the ImageJ UpdaterAuthor:Johannes Schindelin | Class | fiji.updater | Fiji |
|
Border | Border - draws a configurable borderAuthor:DTAI, Incorporated | Class | vib.segment | Fiji |
|
BorderPanel | A panel with a border and an optional title. | Class | | Fiji |
|
Borders | Contains the dimensions of the borders of up to 5D image data objects. | Class | imagescience.image | Fiji |
|
Bottle | | Interface | edu.utexas.clm.archipelago.network.translation | Fiji |
|
Bottler | | Interface | edu.utexas.clm.archipelago.network.translation | Fiji |
|
BoundedInterval | A interval consisting of BoundedValue minimum and maximum that can span any interval in a given range. | Class | bdv.util | Fiji |
|
BoundedTypeBasicImgLoader | | Interface | mpicbg.spim.data.generic.sequence | Fiji |
|
BoundedValue | A int variable that can take any value in a given range. | Class | bdv.util | Fiji |
|
BoundingBox | | Class | ij3d.shapes | Fiji |
|
BoundingBox | The bounding box that contains a region from the minimum inclusive to the maximum non-inclusive. | Class | mpicbg.imglib.labeling | Fiji |
|
BoundingBox | | Class | spim.fiji.spimdata.boundingbox | Fiji |
|
BoundingBoxDialog | | Class | bdv.tools.boundingbox | Fiji |
|
BoundingBoxes | | Class | spim.fiji.spimdata.boundingbox | Fiji |
|
BoundingBoxGUI | | Class | spim.process.fusion.boundingbox | Fiji |
|
BoundingBoxOverlay | | Class | bdv.tools.boundingbox | Fiji |
|
BoundingBoxPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
|
BoundingBoxUtil | | Class | bdv.tools.boundingbox | Fiji |
|
BoundingSphere | | Class | ij3d.shapes | Fiji |
|
BoundKind | | Class | com.sun.tools.javac.code | Fiji |
|
Bounds | Contains bounding box information of up to 5D shapes. | Class | imagescience.shape | Fiji |
|
BoundsCheckedFunction | returns a very large number instead of the function value if arguments are out of bound (useful for minimization with | Class | pal.math | Fiji |
|
BoundsInclusive | | Class | vib.transforms | Fiji |
|
Box | | Class | customnode | Fiji |
|
BoxRealRandomAccessible | | Class | bdv.tools.boundingbox | Fiji |
|
BoxSelectionPanel | | Class | bdv.tools.boundingbox | Fiji |
|
BreakTree | A tree node for a 'break' statement. | Interface | com.sun.source.tree | Fiji |
|
Bresenham3D | | Class | util | Fiji |
|
Brightness | | Class | script.imglib.color | Fiji |
|
BrightnessDialog | Adjust brightness and colors for individual (or groups of) setups. | Class | bdv.tools.brightness | Fiji |
|
BrowserOptionsWindow | Extension of JFrame that allows the user to adjust caching settings. | Class | loci.plugins.util | Fiji |
|
BSpline | This class implements basic operations to work with cubic B-splines. | Class | math | Fiji |
|
BSplineModel | Class for representing the images and the deformations by cubic B-splines: Both, images and deformations, are stored in multi-resolution pyramids. | Class | bunwarpj | Fiji |
|
Bucket | A Bucket is a subarea of the Layer area, which contains either other Buckets or a map of stack_index vs. | Class | ini.trakem2.display | Fiji |
|
Bucketable | | Interface | ini.trakem2.display | Fiji |
|
Buffer | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Interface | imageware | Fiji |
|
BufferedImageBuilder | | Class | levelsets.filter | Fiji |
|
Bug_Submitter | A plugin for reporting bugs to Fiji's BugZilla bug tracker. | Class | Bug_Submitter | Fiji |
|
Builder | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
Bundle | | Class | view5d | Fiji |
|
bUnwarpJ_ | Main class for the image registration plugin for ImageJ/Fiji. | Class | bunwarpj | Fiji |
|
Bureaucrat | Sets a Worker thread to work, and waits until it finishes, blocking all user interface input until then, except for zoom and pan, for all given projects. | Class | ini.trakem2.utils | Fiji |
|
Byte3DArray | | Interface | adt | Fiji |
|
ByteAccess | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
ByteAccess | | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
|
ByteArray | A dynamic array of byte values. | Class | imagescience.array | Fiji |
|
ByteArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
ByteBuffer | A byte buffer is a flexible array which grows when elements are appended. | Class | com.sun.tools.javac.util | Fiji |
|
ByteBuffer | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
ByteCodes | Bytecode instruction codes, as well as typecodes used as instruction modifiers. | Interface | com.sun.tools.javac.jvm | Fiji |
|
ByteDynamicContainer | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
ByteDynamicContainerAccessor | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
ByteElement | | Class | view5d | Fiji |
|
ByteImage | An image containing up to 5D elements of type byte. | Class | imagescience.image | Fiji |
|
ByteImagePlus | ImagePlusContainer for byte-stored data. | Class | mpicbg.imglib.container.imageplus | Fiji |
|
BytePointwise | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
ByteProbability | User: Tom Larkworthy class that encodeds probilities as UNSIGNED bytes and makes things go seriously fast! | Class | adt | Fiji |
|
ByteProcess | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
ByteSet | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
ByteType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
Cache | This is the part of the VolatileGlobalCellCache interface that is exposed to the renderer directly (that is, not via images). | Interface | bdv.img.cache | Fiji |
|
Cache | Access is not synchronized, that is your duty. | Class | ini.trakem2.persistence | Fiji |
|
CacheArrayLoader | | Interface | bdv.img.cache | Fiji |
|
CachedCellImg | | Class | bdv.img.cache | Fiji |
|
CacheFSInfo | Caching implementation of FSInfo. | Class | com.sun.tools.javac.file | Fiji |
|
CacheHints | Hints to the cache on how to handle cell requests. | Class | bdv.img.cache | Fiji |
|
CacheIoTiming | Utilities for per ThreadGroup measuring and budgeting of time spentAuthor:Tobias Pietzsch Class | bdv.img.cache | Fiji | |
|
CachingThread | | Class | ini.trakem2.utils | Fiji |
|
Calculator_Plus | This plugin does various calculations on two images or stacks. | Class | | Fiji |
|
CalibratedImg | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
Calibration | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
Calibration5D | Extension of the Calibration class to 5 Dimensions. | Class | i5d.cal | Fiji |
|
Calibrator | Logic for calibrating images. | Class | loci.plugins.in | Fiji |
|
Canny | Adapted from the Sun Java Forums. | Class | levelsets.filter | Fiji |
|
CanvasImage | | Class | mpicbg.imglib.algorithm | Fiji |
|
CaptureOverlayAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
CaseTree | A tree node for a 'case' in a 'switch' statement. | Interface | com.sun.source.tree | Fiji |
|
CatchTree | A tree node for a 'catch' block in a 'try' statement. | Interface | com.sun.source.tree | Fiji |
|
CategoryJComboBox | A JcomboBox that displays categories, and return the category the selectedAuthor:Jean-Yves Tinevez, adapted from | Class | fiji.plugin.trackmate.gui.panels.components | Fiji |
|
CatmaidImageLoader | | Class | bdv.img.catmaid | Fiji |
|
CatmaidVolatileIntArrayLoader | | Class | bdv.img.catmaid | Fiji |
|
Cbrt | | Class | script.imglib.math | Fiji |
|
Ceil | | Class | script.imglib.math | Fiji |
|
Cell | | Class | mpicbg.imglib.container.cell | Fiji |
|
Cell_Counter | | Class | | Fiji |
|
CellCntrImageCanvas | | Class | | Fiji |
|
CellCntrMarker | | Class | | Fiji |
|
CellCntrMarkerVector | | Class | | Fiji |
|
CellContainer | | Class | mpicbg.imglib.container.cell | Fiji |
|
CellContainerFactory | | Class | mpicbg.imglib.container.cell | Fiji |
|
CellCounter | | Class | | Fiji |
|
CellCounterOptions | Options for the Cell Counter plugin. | Class | | Fiji |
|
CellCursor | | Class | mpicbg.imglib.cursor.cell | Fiji |
|
CellLocalizableByDimCursor | | Class | mpicbg.imglib.cursor.cell | Fiji |
|
CellLocalizableByDimOutOfBoundsCursor | | Class | mpicbg.imglib.cursor.cell | Fiji |
|
CellLocalizableCursor | | Class | mpicbg.imglib.cursor.cell | Fiji |
|
CellLocalizablePlaneCursor | | Class | mpicbg.imglib.cursor.cell | Fiji |
|
CellVoyagerDataExporter | | Class | bdv.ij.export.tiles | Fiji |
|
Center_Transformation | | Class | vib | Fiji |
|
CenterlineSlice | Lionel. | Class | utils | Fiji |
|
CenterTransformation | | Class | vib.app.module | Fiji |
|
CentralDiff | This class implements a four point central difference gradient kernel. | Class | volume | Fiji |
|
Centrality | Following pseudo-code from: Ulrik Brandes. | Class | ini.trakem2.analysis | Fiji |
|
ChangeAttributeId | | Class | bdv.spimdata.tools | Fiji |
|
ChangeViewSetupId | | Class | bdv.spimdata.tools | Fiji |
|
Channel | | Class | ini.trakem2.display | Fiji |
|
Channel | Defines a channel which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
|
Channel | | Class | script.imglib.color | Fiji |
|
ContourSet | | Interface | edu.utexas.clm.reconstructreader.reconstruct | Fiji |
|
ContrastAdjustmentMode | | Class | ini.trakem2.display | Fiji |
|
ContrastEnhancerWrapper | | Class | ini.trakem2.imaging | Fiji |
|
ContrastPlot | Copied and modified from Wayne Rasband's ImageJ ContrastPlot inner class in ij. | Class | ini.trakem2.imaging | Fiji |
|
Control | | Class | fiji.plugin.volumeviewer | Fiji |
|
ControlClickBehavior | A class to provide the behavior on control-clicking oncontent in the 3D viewer. | Class | ini.trakem2.display.d3d | Fiji |
|
ControlJPanel | GUI panel to interactively segmentate an image with SIOX. | Class | org.siox.example | Fiji |
|
ControlJPanel | This class implements the interactive buttons for the Siox segmentation GUI. | Class | siox | Fiji |
|
ControlPanelFrame | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
ControlWindow | Static class that shows one project per tab in a JFrame. | Class | ini.trakem2 | Fiji |
|
Convert | Utility class for static conversion methods between numbers and strings in various formats. | Class | com.sun.tools.javac.util | Fiji |
|
Convert_Red_To_Magenta | | Class | fiji.color | Fiji |
|
Convert_Red_To_Magenta_Clipboard | | Class | fiji.color | Fiji |
|
Converter | | Interface | mpicbg.imglib.function | Fiji |
|
ConverterSetup | Modify the range and color of the converter for a source. | Interface | bdv.tools.brightness | Fiji |
|
ConvertUtil | Provides useful methods for converting images from one colour depth to another. | Class | net.sf.image4j.util | Fiji |
|
ConvexBranchesDecomposition | A class that can decompose the tracks of a Model in convex branches. | Class | fiji.plugin.trackmate.graph | Fiji |
|
ConvolutionFilter | Performs a convolution operation on the input image. | Class | levelsets.filter | Fiji |
|
Convolve3d | | Class | process3d | Fiji |
|
Convolve_3d | | Class | process3d | Fiji |
|
Convolver | Routines to convolve a 1D signal applying mirror boundary conditions. | Class | imageware | Fiji |
|
Convolver | This class implements convolution operations on image planes and volumes. | Class | volume | Fiji |
|
Coordinate | | Class | ini.trakem2.display | Fiji |
|
Coordinate | Encapsulates a three-dimensional Coordinate. | Class | levelsets.algorithm | Fiji |
|
Coordinates | Contains 5D integer coordinates. | Class | imagescience.image | Fiji |
|
CoordinateSystem | | Class | ij3d.shapes | Fiji |
|
CoordinateTransform | InvertibleCoordinateTransform with String import and export as used in | Interface | mpicbg.trakem2.transform | Fiji |
|
CoordinateTransform | | Interface | stitching.model | Fiji |
|
CoordinateTransformList | | Class | mpicbg.trakem2.transform | Fiji |
|
CoordinateTransformXML | | Class | ini.trakem2.io | Fiji |
|
CoordsCursor | Abstract cursor that offers facilities to move the cursor origin (whatever this means for the concrete implementation) by giving physical coordinates, converted | Class | mpicbg.imglib.cursor.special | Fiji |
|
CoordSystem3d | | Class | mpicbg.spim.registration.detection.descriptor | Fiji |
|
CoordSystemSecure3d | | Class | mpicbg.spim.registration.detection.descriptor | Fiji |
|
Copy | | Class | imglib.ops.operator.binary | Fiji |
|
Copy | | Class | imglib.ops.operator.unary | Fiji |
|
CopyOverlayAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
CopyTransparentZero | | Class | imglib.ops.operator.binary | Fiji |
|
Correct_Drift | | Class | QuickPALM | Fiji |
|
Correct_Drift2 | | Class | QuickPALM | Fiji |
|
CorrectBackground | | Class | ini.trakem2.imaging.filters | Fiji |
|
Correlation | | Class | distance | Fiji |
|
CorrespondenceExtraction | | Interface | mpicbg.spim.registration.detection.descriptor | Fiji |
|
CorrespondingInterestPoints | Defines a pair of corresponding interest pointsAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
|
Cos | | Class | script.imglib.math | Fiji |
|
Cosh | | Class | script.imglib.math | Fiji |
|
CostesSignificanceTest | | Class | algorithms | Fiji |
|
CostFunction | Interface representing a function that can calculate the cost to link a source object to a target object. | Interface | fiji.plugin.trackmate.tracking.sparselap.costfunction | Fiji |
|
CostFunctions | Interface for cost function classes, which take a Matrix and fill in values according to the cost function. | Interface | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
|
CostMatrixCreator | Interface for function that can generate a SparseCostMatrix from assignment candidates. | Interface | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
|
Count_Files | | Class | spimopener | Fiji |
|
Count_Labels | | Class | util | Fiji |
|
Counter3D | | Class | Utilities | Fiji |
|
CountingTaskFactory | | Class | ini.trakem2.parallel | Fiji |
|
CoverMakerUtils | Utility methods for Fiji's Cover Maker script. | Class | fiji.util | Fiji |
|
CPDragAndDrop | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
CPU_Meter | | Class | | Fiji |
|
Create_3D_calibration | This plugin creates a 3D calibration table by observing the width and height change of beads over depth (caused by astigmatism). | Class | QuickPALM | Fiji |
|
CreateSymbols | Used to generate a "symbol file" representing rt. | Class | com.sun.tools.javac.sym | Fiji |
|
CreateTracingVolume_ | | Class | tracing | Fiji |
|
Credits | | Class | bunwarpj | Fiji |
|
Crop | | Class | imagescience.transform | Fiji |
|
CropDialog | | Class | bdv.tools.crop | Fiji |
|
CropDialog | Bio-Formats Importer crop options dialog box. | Class | loci.plugins.in | Fiji |
|
CropEditor_ | | Class | | Fiji |
|
CropImgLoader | This ImgLoader provides views and transformations into a cropped region of a data-set (provided by list of Sources). | Class | bdv.tools.crop | Fiji |
|
CrossCorrelation | | Class | mpicbg.imglib.algorithm.correlation | Fiji |
|
CrossCorrelation2D | | Class | mpi.fruitfly.registration | Fiji |
|
CrossCorrelationResult2D | | Class | stitching | Fiji |
|
CrossCorrelationResult3D | | Class | stitching | Fiji |
|
CRTable | This class contains the CharacterRangeTable for some method and the hashtable for mapping trees or lists of trees to their | Class | com.sun.tools.javac.jvm | Fiji |
|
CRTFlags | The CharacterRangeTable flags indicating type of an entry. | Interface | com.sun.tools.javac.jvm | Fiji |
|
CSVReader | A very simple CSV reader released under a commercial-friendly license. | Class | util.opencsv | Fiji |
|
CSVWriter | A very simple CSV writer released under a commercial-friendly license. | Class | util.opencsv | Fiji |
|
Cube | Triangular mesh of a cube in 3D. | Class | imagescience.mesh | Fiji |
|
Cube | | Class | octree | Fiji |
|
CubeData | | Class | octree | Fiji |
|
CubicBSplineTransform | Class to implement elastic transforms based on cubic B-splines. | Class | bunwarpj.trakem2.transform | Fiji |
|
CUDADevice | | Class | spim.process.cuda | Fiji |
|
CUDAFourierConvolution | | Interface | spim.process.cuda | Fiji |
|
CUDASeparableConvolution | Interface to load the native library for separable convolution using CUDA/CPU (https://github. | Interface | spim.process.cuda | Fiji |
|
CUDASeparableConvolutionFunctions | Executes gaussian convolution using the native CUDA implementation (https://github. | Class | spim.process.cuda | Fiji |
|
CUDAStandardFunctions | | Interface | spim.process.cuda | Fiji |
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CUDATools | | Class | mpicbg.spim.postprocessing.deconvolution2 | Fiji |
|
CUDATools | | Class | spim.process.cuda | Fiji |
|
CumulativeQueue | Class to create a cumulative queue in bUnwarpJ. | Class | bunwarpj | Fiji |
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CurrentSlice | | Class | fiji.util | Fiji |
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Cursor | The Cursor interface The Cursor is responsible for iterating over the image. | Interface | mpicbg.imglib.cursor | Fiji |
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CursorFactory | Some static cursor creation utilities. | Class | org.siox.example | Fiji |
|
CursorImpl | We use the class CursorImpl instead of implementing methods here so that other classes can only implement Cursor and extend other classes instead. | Class | mpicbg.imglib.cursor | Fiji |
|
CursorLink | | Interface | mpicbg.imglib.cursor.link | Fiji |
|
Curvatures_ | | Class | fiji.features | Fiji |
|
CustomCanvas | | Class | vib.segment | Fiji |
|
CustomIndexedTriangleMesh | | Class | customnode | Fiji |
|
CustomLineMesh | | Class | customnode | Fiji |
|
CustomMesh | | Class | customnode | Fiji |
|
CustomMeshNode | | Class | customnode | Fiji |
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CustomMultiMesh | | Class | customnode | Fiji |
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CustomPointMesh | | Class | customnode | Fiji |
|
CustomQuadMesh | | Class | customnode | Fiji |
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CustomStackWindow | | Class | vib.segment | Fiji |
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CustomTransparentTriangleMesh | | Class | customnode | Fiji |
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CustomTriangleMesh | | Class | customnode | Fiji |
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CustomVolumeBehavior2 | CustomVolumeBehavior2 implements the special Java 3d Picking behavior needed by the Volume_Calculator. | Class | volumeCalculator | Fiji |
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CVMKalmanFilter | A Kalman filter that deals with a single particle motion in 3D with a constant velocity vector. | Class | fiji.plugin.trackmate.tracking.kalman | Fiji |
|
Cylinder | Triangular mesh of a cylinder in 3D. | Class | imagescience.mesh | Fiji |
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CZLSMInfo | | Class | org.imagearchive.lsm.reader.info | Fiji |
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CZLSMInfoExtended | | Class | org.imagearchive.lsm.toolbox.info | Fiji |
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Daltonize_ | This plugin can simulate color blindness. | Class | | Fiji |
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Data_Explorer | | Class | spim.fiji.plugin | Fiji |
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DataAccess | | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
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DataBlock | | Class | customnode.u3d | Fiji |
|
DataBrowser | Extension of StackWindow with additional UI trimmings for animation, virtual stack caching options, metadata, and general beautification. | Class | loci.plugins.util | Fiji |
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DataChannel | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
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DataChunk | An abstract class to help support objects that might not otherwise be Serializable This class should be considered volatile and subject to change. | Class | edu.utexas.clm.archipelago.data | Fiji |
|
DataContainer | The DataContainer keeps all the source data, jobName, pre-processing results and algorithm results that have been computed. | Class | gadgets | Fiji |
|
DataType | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
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DateUtils | | Class | | Fiji |
|
DBLoader | | Class | ini.trakem2.persistence | Fiji |
|
DBObject | Base class of all objects that can be saved in a database or XML file. | Class | ini.trakem2.persistence | Fiji |
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DCTInterpolator | | Class | mpicbg.imglib.interpolation.dct | Fiji |
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DCTInterpolatorFactory | | Class | mpicbg.imglib.interpolation.dct | Fiji |
|
Debug | | Class | fiji | Fiji |
|
Debug | | Class | fiji.plugin.trackmate | Fiji |
|
DeclaredType | Represents a declared type, either a class type or an interface type. | Interface | javax.lang.model.type | Fiji |
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Deconvolver | | Interface | mpicbg.spim.postprocessing.deconvolution2 | Fiji |
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DefaultAnimatableUniverse | | Class | ij3d | Fiji |
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DefaultCostMatrixCreator | A CostMatrixCreator that build a cost matrix from 3 lists containing the sources, the targets and the associated costs. | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
|
DefaultExecutorProvider | Default Executor Provider, which creates ExecutorServices from java. | Class | ini.trakem2.parallel | Fiji |
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DefaultFijiService | The default initializer for the Fiji legacy application. | Class | fiji | Fiji |
|
DefaultFileFilter | Filter for use in a JFileChooser. | Class | fiji.plugin.trackmate.util | Fiji |
|
DefaultGraphicsSource | Handles default mode, i. | Class | ini.trakem2.display.graphics | Fiji |
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DefaultImgTitler | | Class | spim.process.fusion.export | Fiji |
|
DefaultLabelingCursorStrategy | A relatively conservative strategy suitable for blobby objects - retain the bounding boxes and raster starts and reconstruct the | Class | mpicbg.imglib.labeling | Fiji |
|
DefaultLabelingCursorStrategyFactory | | Class | mpicbg.imglib.labeling | Fiji |
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DefaultLegacyPostRefreshMenus | LegacyPostRefreshMenus plugin that ensures the MenuRefresher runs after the Refresh Menus command is | Class | fiji | Fiji |
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DefaultMinAndMax | Sets the minimum to zero and the maximum to the maximum supported, or 255 for FloatProcessor and any other unknown ImageProcessor. | Class | ini.trakem2.imaging.filters | Fiji |
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DefaultMipmapOrdering | The standard mipmap ordering strategy for local hdf5 data. | Class | bdv.viewer.render | Fiji |
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DefaultMode | | Class | ini.trakem2.display | Fiji |
|
DefaultOMEMetadataService | Default implementation of OMEMetadataService. | Class | io.scif.ome.services | Fiji |
|
DefaultOMETranslator | Basic translator for OME Metadata. | Class | io.scif.ome.translators | Fiji |
|
DefaultOMEXMLService | Default implementation of OMEXMLService. | Class | io.scif.ome.services | Fiji |
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DefaultTemplate | | Class | edu.utexas.clm.reconstructreader.trakem2 | Fiji |
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DefaultTreeTransferHandler | Adapted from freely available code by DeuDeu from http://forum. | Class | ini.trakem2.tree | Fiji |
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DefaultUniverse | | Class | ij3d | Fiji |
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DeferredArray3D | | Class | levelsets.algorithm | Fiji |
|
DeferredByteArray3D | | Class | levelsets.algorithm | Fiji |
|
DeferredDoubleArray3D | | Class | levelsets.algorithm | Fiji |
|
DeferredIntArray3D | | Class | levelsets.algorithm | Fiji |
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DeferredObjectArray3D | | Class | levelsets.algorithm | Fiji |
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Define_Bounding_Box | | Class | spim.fiji.plugin | Fiji |
|
Define_Multi_View_Dataset | | Class | spim.fiji.plugin | Fiji |
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Deformable_Registration | | Class | vib | Fiji |
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DeInterleave_ | | Class | | Fiji |
|
Delaunay_Voronoi | Draw Delaunay triangulation or Voronoi Diagram as an overlay. | Class | | Fiji |
|
DelaunayTriangulation | A 2D Delaunay Triangulation (DT) with incremental site insertion. | Class | delaunay | Fiji |
|
Delete_Frame | | Class | video2 | Fiji |
|
DeltaVision_Converter | | Class | | Fiji |
|
Demo | This class is an applet demonstration of the EDF. | Class | | Fiji |
|
Demodulation | | Class | FlowJ | Fiji |
|
DenseFieldLevelSet | | Class | levelsets.algorithm | Fiji |
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Descriptor_based_registration | | Class | plugin | Fiji |
|
Descriptor_based_series_registration | | Class | plugin | Fiji |
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DescriptorParameters | | Class | plugin | Fiji |
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Despeckle_ | | Class | | Fiji |
|
DetailsFrame | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
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DetectInterestPointsPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
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Detection | | Class | mpicbg.spim.registration.detection | Fiji |
|
Detection | | Class | spim.process.interestpointregistration | Fiji |
|
DetectionChannel | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
|
DetectionDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
DetectionIdentification | The DetectionIdentification object stores the link (via ID) to an Detection-object and not an actual instance, but a link to the ViewDataBeads object where it belongs to. | Class | mpicbg.spim.registration.detection | Fiji |
|
DetectionRegistration | | Class | mpicbg.spim.registration.detection | Fiji |
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DetectionSegmentation | | Class | mpicbg.spim.registration.detection | Fiji |
|
DetectionSegmentation | | Class | process | Fiji |
|
DetectionStructure | | Class | mpicbg.spim.registration.detection | Fiji |
|
DetectionUtils | | Class | fiji.plugin.trackmate.detection | Fiji |
|
DetectionView | | Class | mpicbg.spim.registration.detection | Fiji |
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DetectorChoiceDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
DetectorConfigurationDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
DetectorKeys | | Class | fiji.plugin.trackmate.detection | Fiji |
|
DetectorProvider | | Class | fiji.plugin.trackmate.providers | Fiji |
|
DevUtil | | Class | mpicbg.imglib.util | Fiji |
|
DHM | | Class | spim.fiji.datasetmanager | Fiji |
|
DHMImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
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DHMMetaData | | Class | spim.fiji.datasetmanager | Fiji |
|
Diagnostic | Interface for diagnostics from tools. | Interface | javax.tools | Fiji |
|
DiagnosticCollector | Provides an easy way to collect diagnostics in a list. | Class | javax.tools | Fiji |
|
DiagnosticFormatter | A formatter for diagnostic messages. | Class | com.sun.tools.javac.util | Fiji |
|
DiagnosticListener | Interface for receiving diagnostics from tools. | Interface | javax.tools | Fiji |
|
Dichromacy_ | | Class | | Fiji |
|
DICOMTranslator | Container class for translators between OME and DICOM formats. | Class | io.scif.ome.translators | Fiji |
|
Difference | | Class | imglib.ops.operator.binary | Fiji |
|
Difference | | Class | script.imglib.math | Fiji |
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DifferenceARGBComposite | | Class | ini.trakem2.display.graphics | Fiji |
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DifferenceOf | | Class | spim.fiji.plugin.interestpointdetection | Fiji |
|
DifferenceOfGaussian | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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DifferenceOfGaussian | | Class | spim.fiji.plugin.interestpointdetection | Fiji |
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DifferenceOfGaussianCUDA | | Class | spim.process.interestpointdetection | Fiji |
|
DifferenceOfGaussianNewPeakFinder | | Class | spim.process.interestpointdetection | Fiji |
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DifferenceOfGaussianPeak | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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DifferenceOfGaussianReal | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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DifferenceOfGaussianReal1 | | Class | mpicbg.imglib.algorithm.scalespace | Fiji |
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DifferenceOfMean | | Class | spim.fiji.plugin.interestpointdetection | Fiji |
|
DifferentialEvolution | global minimization of a real-valued function of several variables without using derivatives using a genetic algorithm | Class | pal.math | Fiji |
|
Differentials_ | | Class | | Fiji |
|
Differentiator | Computes Gaussian derivatives of images. | Class | imagescience.feature | Fiji |
|
Diffusion | This is a class that implements nonlinear diffusion in 2D. | Class | volume | Fiji |
|
Diffusion3D | This is a class that implements nonlinear diffusion in 2D, 3D and 4D. | Class | volume | Fiji |
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DiffusionInterpol2 | | Class | vib | Fiji |
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DiffusionInterpol2_ | | Class | vib | Fiji |
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Dilatation | | Class | levelsets.filter | Fiji |
|
Dilate | | Class | script.imglib.algorithm | Fiji |
|
Dilate_ | This class implements the dilation filter. | Class | process3d | Fiji |
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Dimension | | Class | fiji.plugin.trackmate | Fiji |
|
Dimensionality | | Interface | mpicbg.imglib.cursor.vector | Fiji |
|
Dimensions | Contains the dimensions of up to 5D image data objects. | Class | imagescience.image | Fiji |
|
DimsAndExistence | The dimensions of an image and a flag indicating whether that image exists (can be loaded) | Class | bdv.img.hdf5 | Fiji |
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DirectAccessContainer | | Interface | mpicbg.imglib.container | Fiji |
|
DirectAccessContainerFactory | | Class | mpicbg.imglib.container | Fiji |
|
DirectAccessContainerImpl | | Class | mpicbg.imglib.container | Fiji |
|
DirectConvolution | DirectConvolution is an ROIAlgorithm designed to do both convolution and cross-correlation by operating on the image and kernel directly, rather than by using such time-saving tricks as | Class | mpicbg.imglib.algorithm.roi | Fiji |
|
DirectCrossCorr | DirectCrossCorr performs direct cross-correlation of a kernel against an image. | Class | mpicbg.imglib.algorithm.roi | Fiji |
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Directionality_ | Usage This plugin is used to infer the preferred orientation of structures present in the input image. | Class | fiji.analyze.directionality | Fiji |
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Dirichlet_Edge | | Class | vib.edge | Fiji |
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DiscCursor | | Class | mpicbg.imglib.cursor.special | Fiji |
|
DiscreteIntHistogramBinFactory | A HistogramBinFactory to be used to create a discrete Histogram over integer-valued Type's. | Class | mpicbg.imglib.algorithm.histogram.discrete | Fiji |
|
Dispatcher | | Class | ini.trakem2.utils | Fiji |
|
Display | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
Display | A Display is a class to show a Layer and enable mouse and keyboard manipulation of all its components. | Class | ini.trakem2.display | Fiji |
|
Display | | Class | mpicbg.imglib.image.display | Fiji |
|
Display3D | One Display3D instance for each LayerSet (maximum). | Class | ini.trakem2.display | Fiji |
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Display3DGUI | | Class | ini.trakem2.display.d3d | Fiji |
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Display_View | | Class | spim.fiji.plugin | Fiji |
|
Displayable | The class that any element to be drawn on a Display must extend. | Class | ini.trakem2.display | Fiji |
|
DisplayableChooser | A class to be used when a click to select Displayable objects on the Display detects that there are more than one under the mouse cursor. | Class | ini.trakem2.display | Fiji |
|
DisplayablePanel | | Class | ini.trakem2.display | Fiji |
|
DisplayCanvas | | Class | ini.trakem2.display | Fiji |
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DisplayChangeEvent | To be raised when a property of the image display has been changedSee Also:Serialized Form | Class | | Fiji |
|
DisplayChangeListener | The Listener interface for receiving DisplayChange events. | Interface | | Fiji |
|
DisplayHandler | Logic for displaying images and metadata onscreen using ImageJ. | Class | loci.plugins.in | Fiji |
|
DisplayImage | | Class | spim.process.fusion.export | Fiji |
|
DisplayMode | | Class | bdv.viewer | Fiji |
|
DisplayNavigator | | Class | ini.trakem2.display | Fiji |
|
DisplaySettingsEvent | An event object fired when the user changes one of the display settings through this GUI panel. | Class | fiji.plugin.trackmate.gui | Fiji |
|
DisplaySettingsListener | Interface for classes that listen to display settings changes on a GUI. | Interface | fiji.plugin.trackmate.gui | Fiji |
|
DisplayViewPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
|
Dissector | Each label is simply a cross marker with a number attached; labels are grouped; each member label of the group has the same number. | Class | ini.trakem2.display | Fiji |
|
Distance_Ridge | | Class | sc.fiji.localThickness | Fiji |
|
Distance_Transform_3D | | Class | process3d | Fiji |
|
DistanceComparator | Compares which Leaf is closer to another LeafAuthor:Johannes Schindelin and Stephan Preibisch | Class | fiji.util | Fiji |
|
DistanceComparator | Compares which Leaf is closer to another LeafAuthor:Johannes Schindelin, Stephan Preibisch | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
|
DistanceTransform3D | | Class | process3d | Fiji |
|
Distortion_Correction | | Class | lenscorrection | Fiji |
|
DistortionCorrectionTask | Methods collection to be called from the GUI for alignment tasks. | Class | lenscorrection | Fiji |
|
DistributionInference | | Class | inference | Fiji |
|
Dither | | Class | script.imglib.algorithm | Fiji |
|
Divide | | Class | imglib.ops.operator.binary | Fiji |
|
Divide | | Class | script.imglib.math | Fiji |
|
DivideByConstant | | Class | imglib.ops.operator.unary | Fiji |
|
DLabel | This class is named funny to avoid confusion with java. | Class | ini.trakem2.display | Fiji |
|
DM3_Reader | | Class | io | Fiji |
|
DNDInsertImage | | Class | ini.trakem2.utils | Fiji |
|
DNDTree | A JTree which has a built-in drag and drop feature. | Class | ini.trakem2.tree | Fiji |
|
DocCommentScanner | An extension to the base lexical analyzer that captures and processes the contents of doc comments. | Class | com.sun.tools.javac.parser | Fiji |
|
DoG | This is a 1D Difference of Gaussian convolution kernel. | Class | volume | Fiji |
|
DoG2D | This is a 2D Difference of Gaussian convolution kernel. | Class | volume | Fiji |
|
DoG3D | This is a 3D Difference of Gaussian convolution kernel. | Class | volume | Fiji |
|
DogDetector | | Class | fiji.plugin.trackmate.detection | Fiji |
|
DogDetectorConfigurationPanel | | Class | fiji.plugin.trackmate.gui.panels.detector | Fiji |
|
DogDetectorFactory | | Class | fiji.plugin.trackmate.detection | Fiji |
|
DoGMaximum | | Class | mpicbg.spim.registration.bead.laplace | Fiji |
|
DoGPeaks | Perform a difference of Gaussian on the given Image, and this class itself becomes the List of found peaks, each as a float[] array that specifies its position. | Class | script.imglib.analysis | Fiji |
|
DOM | | Class | mpicbg.spim.segmentation | Fiji |
|
DomainCursor | Abstract class for CoordsCursors that iterate over a domain which size can be determined by a single parameter. | Class | mpicbg.imglib.cursor.special | Fiji |
|
DomXmlExporter | | Class | org.imagearchive.lsm.toolbox | Fiji |
|
DoneButtonListener | | Class | selection | Fiji |
|
DoStep | | Interface | ini.trakem2.display | Fiji |
|
DoubleAccess | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
DoubleAccess | | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
|
DoubleArray | | Class | fiji.util | Fiji |
|
DoubleArray | A dynamic array of double values. | Class | imagescience.array | Fiji |
|
DoubleArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
DoubleBuffer | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
DoubleDynamicContainer | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
DoubleDynamicContainerAccessor | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
DoubleElement | | Class | view5d | Fiji |
|
DoubleOption | A double option for one of the plugins. | Class | loci.plugins.prefs | Fiji |
|
DoublePointwise | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
DoubleProcess | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
DoubleSet | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
DoubleSlider | | Class | spimopener | Fiji |
|
DoubleType | | Class | mpicbg.imglib.type.numeric.real | Fiji |
|
DoWhileLoopTree | A tree node for a 'do' statement. | Interface | com.sun.source.tree | Fiji |
|
Downsample | | Class | bdv.export | Fiji |
|
DownSample | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
|
Downsample | | Class | script.imglib.algorithm | Fiji |
|
Downsample | | Class | spim.process.interestpointdetection | Fiji |
|
DownsampleLogDetector | | Class | fiji.plugin.trackmate.detection | Fiji |
|
DownSampleLogDetectorConfigurationPanel | | Class | fiji.plugin.trackmate.gui.panels.detector | Fiji |
|
DownsampleLogDetectorFactory | | Class | fiji.plugin.trackmate.detection | Fiji |
|
Downsampler | Helper class for running the " Image > Scale. | Class | mpicbg.stitching | Fiji |
|
Downsampler | | Class | mpicbg.trakem2.util | Fiji |
|
DownsamplerMipMaps | | Class | ini.trakem2.persistence | Fiji |
|
Draw_Roi | | Class | video2 | Fiji |
|
DTD | | Class | mpicbg.trakem2.transform | Fiji |
|
DTDParser | Reads either a DOCTYPE chunk from an xml file or a . | Class | ini.trakem2.tree | Fiji |
|
DummyCanvas | | Class | sc.fiji.timelapse | Fiji |
|
DummyNodeShell | A dummy implementation of NodeShell, for use with volunteer nodes. | Class | edu.utexas.clm.archipelago.network.shell | Fiji |
|
DummySpotColorGenerator | A dummy spot color generator that always return the default color. | Class | fiji.plugin.trackmate.visualization | Fiji |
|
DummyTrackColorGenerator | A dummy track color generator that always return the default color. | Class | fiji.plugin.trackmate.visualization | Fiji |
|
Duplex | | Class | edu.utexas.clm.archipelago.data | Fiji |
|
Duplicate_Frame | | Class | video2 | Fiji |
|
Duplicate_Image5D | | Class | | Fiji |
|
Duplicate_Transformation | | Class | spim.fiji.plugin | Fiji |
|
Dynamic_Reslice | Dynamic reslice of a stack. | Class | fiji.stacks | Fiji |
|
DynamicContainer | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
DynamicContainerAccessor | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
DynamicContainerFactory | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
DynamicCursor | | Class | mpicbg.imglib.cursor.dynamic | Fiji |
|
DynamicLocalizableByDimCursor | | Class | mpicbg.imglib.cursor.dynamic | Fiji |
|
DynamicLocalizableByDimOutOfBoundsCursor | | Class | mpicbg.imglib.cursor.dynamic | Fiji |
|
DynamicLocalizableCursor | | Class | mpicbg.imglib.cursor.dynamic | Fiji |
|
DynamicLocalizablePlaneCursor | | Class | mpicbg.imglib.cursor.dynamic | Fiji |
|
EasyDisplay | | Class | results | Fiji |
|
EasyLogger | | Interface | edu.utexas.clm.archipelago.util | Fiji |
|
EDF_Easy_ | This class is a plugin of ImageJ. | Class | | Fiji |
|
EDF_Expert_ | | Class | | Fiji |
|
EDF_Viewer3D_ | | Class | | Fiji |
|
EdfComplexWavelets | | Class | edf | Fiji |
|
EdfRealWavelets | | Class | edf | Fiji |
|
EdfSobel | | Class | edf | Fiji |
|
EdfVariance | | Class | edf | Fiji |
|
EdfWaveletMaximumModulus | | Class | edf | Fiji |
|
Edge | This class represents the edge between two vertices in an undirected graph. | Class | sc.fiji.analyzeSkeleton | Fiji |
|
EdgeAnalyzer | Interface for analyzers that can compute scalar numerical features for an edge of a TrackMate model. | Interface | fiji.plugin.trackmate.features.edges | Fiji |
|
EdgeAnalyzerProvider | A provider for the edge analyzers provided in the GUI. | Class | fiji.plugin.trackmate.providers | Fiji |
|
EdgeContraction | | Class | customnode | Fiji |
|
EdgeDetectors_ | | Class | vib | Fiji |
|
EdgeFeatureCalculator | A class dedicated to centralizing the calculation of the numerical features of spots, through EdgeAnalyzers. | Class | fiji.plugin.trackmate.features | Fiji |
|
EdgeFeatureGrapher | | Class | fiji.plugin.trackmate.features | Fiji |
|
Edges | Detects edges in images. | Class | imagescience.feature | Fiji |
|
EdgeTargetAnalyzer | | Class | fiji.plugin.trackmate.features.edges | Fiji |
|
EdgeTimeLocationAnalyzer | | Class | fiji.plugin.trackmate.features.edges | Fiji |
|
EdgeVelocityAnalyzer | | Class | fiji.plugin.trackmate.features.edges | Fiji |
|
Edit_Video | | Class | video | Fiji |
|
EditAmiraParameters_ | | Class | vib | Fiji |
|
Editions | To extract and represent the sequence of editions that convert any N-dimensional vector string to any other of the same number of dimensions. | Class | ini.trakem2.vector | Fiji |
|
EDT | | Class | fiji.process3d | Fiji |
|
EDT_S1D | | Class | sc.fiji.localThickness | Fiji |
|
EfficientBayesianBased | | Class | spim.process.fusion.deconvolution | Fiji |
|
EigenResultsDouble | | Class | tracing | Fiji |
|
EigenResultsFloat | | Class | tracing | Fiji |
|
Eigensystem2x2Double | | Class | math3d | Fiji |
|
Eigensystem2x2Float | | Class | math3d | Fiji |
|
Eigensystem3x3Double | | Class | math3d | Fiji |
|
Eigensystem3x3Float | | Class | math3d | Fiji |
|
ElasticLayerAlignment | | Class | mpicbg.trakem2.align | Fiji |
|
ElasticMontage | | Class | mpicbg.trakem2.align | Fiji |
|
ElasticTransform_ | | Class | vib | Fiji |
|
ElasticTransformedImage | | Class | vib | Fiji |
|
Element | Represents a program element such as a package, class, or method. | Interface | javax.lang.model.element | Fiji |
|
ElementFilter | Filters for selecting just the elements of interest from a collection of elements. | Class | javax.lang.model.util | Fiji |
|
ElementKind | The kind of an element. | Class | javax.lang.model.element | Fiji |
|
ElementKindVisitor6 | A visitor of program elements based on their kind with default behavior appropriate for the RELEASE_6 source version. | Class | javax.lang.model.util | Fiji |
|
Elements | Utility methods for operating on program elements. | Interface | javax.lang.model.util | Fiji |
|
ElementScanner6 | A scanning visitor of program elements with default behavior appropriate for the RELEASE_6 | Class | javax.lang.model.util | Fiji |
|
ElementVisitor | A visitor of program elements, in the style of the visitor design pattern. | Interface | javax.lang.model.element | Fiji |
|
Ellipse | An ellipse in the x-y plane. | Class | imagescience.shape | Fiji |
|
Embed | Embeds an image into a larger image. | Class | imagescience.transform | Fiji |
|
EmptyProjector | | Class | bdv.viewer.render | Fiji |
|
EmptyStatementTree | A tree node for an empty (skip) statement. | Interface | com.sun.source.tree | Fiji |
|
EndianUtils | Provides utility methods for endian conversions [big-endian to little-endian; little-endian to big-endian]. | Class | net.sf.image4j.io | Fiji |
|
EndModule | | Class | vib.app.module | Fiji |
|
EndPosParser | This class is similar to Parser except that it stores ending positions for the tree nodes. | Class | com.sun.tools.javac.parser | Fiji |
|
EnhanceContrast | Uses the @{link ContrastEnhancer. | Class | ini.trakem2.imaging.filters | Fiji |
|
EnhancedForLoopTree | A tree node for an "enhanced" 'for' loop statement. | Interface | com.sun.source.tree | Fiji |
|
Enter | This class enters symbols for all encountered definitions into the symbol table. | Class | com.sun.tools.javac.comp | Fiji |
|
Entity | Something that has a unique id. | Class | mpicbg.spim.data.generic.base | Fiji |
|
EntityUtils | | Class | mpicbg.spim.data.generic.base | Fiji |
|
Entropy | | Class | mpicbg.spim.fusion.entropy | Fiji |
|
EntropyFast | | Class | mpicbg.spim.fusion | Fiji |
|
EntropyFastFactory | | Class | mpicbg.spim.fusion | Fiji |
|
EntropyFloatArray3D | | Class | mpicbg.spim.fusion.entropy | Fiji |
|
Env | A class for environments, instances of which are passed as arguments to tree visitors. | Class | com.sun.tools.javac.comp | Fiji |
|
EPSTranslator | Container class for translators between OME and EPS formats. | Class | io.scif.ome.translators | Fiji |
|
Equality_Example | An example that demonstrates one potential peril of the Cluster ExecutorService. | Class | edu.utexas.clm.archipelago.example | Fiji |
|
Equalize | Plugin containing methods to equalize imageas and volumes. | Class | volume | Fiji |
|
EqualizeHistogram | | Class | ini.trakem2.imaging.filters | Fiji |
|
EquirectangularPanorama_View | | Class | mpicbg.panorama | Fiji |
|
EquirectangularProjection | A rectlinear projection from equirectangular coordinates (longitude, latitude). | Class | mpicbg.panorama | Fiji |
|
Erode | | Class | script.imglib.algorithm | Fiji |
|
Erode_ | This class implements the erosion filter. | Class | process3d | Fiji |
|
Erosion | | Class | levelsets.filter | Fiji |
|
ErroneousTree | A tree node to stand in for a malformed expression. | Interface | com.sun.source.tree | Fiji |
|
ErrorFunction | error function and related stuffVersion:$Id: ErrorFunction. | Class | pal.math | Fiji |
|
ErrorStatistic | | Class | stitching.model | Fiji |
|
ErrorType | Represents a class or interface type that cannot be properly modeled. | Interface | javax.lang.model.type | Fiji |
|
Euclidean | | Class | distance | Fiji |
|
Event | | Class | org.imagearchive.lsm.toolbox.info | Fiji |
|
EventList | | Class | org.imagearchive.lsm.toolbox.info | Fiji |
|
ExecutableElement | Represents a method, constructor, or initializer (static or instance) of a class or interface, including annotation type | Interface | javax.lang.model.element | Fiji |
|
ExecutableType | Represents the type of an executable. | Interface | javax.lang.model.type | Fiji |
|
Executer | | Class | ij3d | Fiji |
|
ExecutorProvider | Allow the source ExecutorServices in TrakEM2 to be configured. | Class | ini.trakem2.parallel | Fiji |
|
ExistingByteArrays | Instead of creating new cell arrays, it return the corresponding array from a predefined listAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
ExistingCharArrays | Instead of creating new cell arrays, it return the corresponding array from a predefined listAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
ExistingDoubleArrays | Instead of creating new cell arrays, it return the corresponding array from a predefined listAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
ExistingFloatArrays | Instead of creating new cell arrays, it return the corresponding array from a predefined listAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
ExistingIntArrays | Instead of creating new cell arrays, it return the corresponding array from a predefined listAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
ExistingLongArrays | Instead of creating new cell arrays, it return the corresponding array from a predefined listAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
ExistingShortArrays | Instead of creating new cell arrays, it return the corresponding array from a predefined listAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
Exp | | Class | imglib.ops.operator.unary | Fiji |
|
Exp | | Class | script.imglib.math | Fiji |
|
Expm1 | | Class | script.imglib.math | Fiji |
|
ExponentialGenerator | Exponential random number generator. | Class | imagescience.random | Fiji |
|
ExponentialMathType | | Interface | mpicbg.imglib.type.numeric | Fiji |
|
Export_EPS | | Class | io | Fiji |
|
ExportableChartPanel | | Class | fiji.plugin.trackmate.util | Fiji |
|
ExportCellVoyagerPlugIn | | Class | bdv.ij | Fiji |
|
ExportedTile | | Class | mpicbg.trakem2.transform | Fiji |
|
Exporter | Core logic for the Bio-Formats Exporter ImageJ plugin. | Class | loci.plugins.out | Fiji |
|
ExportImagePlusPlugIn | ImageJ plugin to export the current image to xml/hdf5. | Class | bdv.ij | Fiji |
|
ExportMesh_ | | Class | marchingcubes | Fiji |
|
ExportMipmapInfo | | Class | bdv.export | Fiji |
|
ExportSpimData2HDF5 | | Class | spim.process.fusion.export | Fiji |
|
ExportSpimData2TIFF | | Class | spim.process.fusion.export | Fiji |
|
ExportSpimFusionPlugIn | | Class | bdv.ij | Fiji |
|
ExportSpimSequencePlugIn | | Class | bdv.ij | Fiji |
|
ExportStatsToIJAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
ExportTracksToXML | | Class | fiji.plugin.trackmate.action | Fiji |
|
ExportUnsignedShort | | Class | mpicbg.trakem2.transform | Fiji |
|
Exposure_Blend_Two_Stacks | | Class | util | Fiji |
|
ExpressionStatementTree | A tree node for an expression statement. | Interface | com.sun.source.tree | Fiji |
|
ExpressionTree | A tree node used as the base class for the different types ofSince:1. | Interface | com.sun.source.tree | Fiji |
|
ExtendedDepthOfField | | Class | edfgui | Fiji |
|
ExtendedPointMatch | | Class | selection | Fiji |
|
ExtensionFileFilter | File filter for JFileChooser, filtering regular files according to their extensions. | Class | org.siox.example | Fiji |
|
Extract_Images_From_PDF | Extract all images from a PDF file (or from an URL given as argument), and open them all within ImageJ in their original resolution. | Class | io | Fiji |
|
Extract_Surface | | Class | vib | Fiji |
|
ExtractPSF | | Class | mpicbg.spim.postprocessing.deconvolution | Fiji |
|
ExtractPSF | | Class | spim.process.fusion.deconvolution | Fiji |
|
ExtractTrackStackAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
Extrema | | Class | sc.fiji.timelapse | Fiji |
|
Extremizer | Finds local extrema in images. | Class | imagescience.segment | Fiji |
|
Factory | | Interface | mpicbg.imglib | Fiji |
|
FakeAccess | | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
|
FakeArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
FakeImagePlus | Need a non-null ImagePlus for the ImageCanvas, even if fake. | Class | ini.trakem2.display | Fiji |
|
FakeImageWindow | A class to prevent ROIs from failing. | Class | ini.trakem2.display | Fiji |
|
FakeType | | Class | mpicbg.imglib.type.label | Fiji |
|
Fast_FourierTransform | | Class | registration3d | Fiji |
|
FastIntegralImage | Written following the code in ImgLib1's IntegralImage2 and ScaleAreaAveraging2d, authored by Stephan Preibisch and Albert Cardona. | Class | ini.trakem2.imaging | Fiji |
|
FastLAPTracker | | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji |
|
FastLAPTrackerFactory | | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji |
|
FastMarching | | Class | levelsets.algorithm | Fiji |
|
FastMarchingBandElement | Voxel element for the Fast Marching trial set. | Class | levelsets.algorithm | Fiji |
|
FastMatrix | | Class | vib | Fiji |
|
FastMatrixN | | Class | math3d | Fiji |
|
FastMatrixTransform | | Class | vib.transforms | Fiji |
|
FatalError | Throwing an instance of this class causes immediate termination of the main compiler method. | Class | com.sun.tools.javac.util | Fiji |
|
FeatureAnalyzer | | Interface | fiji.plugin.trackmate.features | Fiji |
|
FeatureColorGenerator | Interface for color generator that can color objects based on a feature identified by a String. | Interface | fiji.plugin.trackmate.visualization | Fiji |
|
FeatureFilter | A helper class to store a feature filter. | Class | fiji.plugin.trackmate.features | Fiji |
|
FeatureModel | This class represents the part of the Model that is in charge of dealing with spot features and track features. | Class | fiji.plugin.trackmate | Fiji |
|
FeaturePenaltyCostFunction | A cost function that tempers a square distance cost by difference in feature This cost is calculated as follow: | Class | fiji.plugin.trackmate.tracking.sparselap.costfunction | Fiji |
|
FeaturePlotSelectionPanel | A simple Panel to allow the selection of a X key amongst an enum, and of multiple Y keys from the same enum. | Class | fiji.plugin.trackmate.gui.panels.components | Fiji |
|
FeaturePlotSelectionPanel | A simple Panel to allow the selection of a X key amongst an enum, and of multiple Y keys from the same enum. | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
FFT | Computes forward and inverse Fourier transforms of images. | Class | imagescience.fourier | Fiji |
|
FFT | | Class | sc.fiji.timelapse | Fiji |
|
FFT | | Class | script.imglib.algorithm | Fiji |
|
FFT_ | | Class | process3d | Fiji |
|
FFTFunctions | | Class | mpicbg.imglib.algorithm.fft | Fiji |
|
FibonacciHeap | | Class | util | Fiji |
|
FibonacciHeapDouble | | Class | util | Fiji |
|
FibonacciHeapInt | | Class | util | Fiji |
|
FIBSEM_Reader | Opens the proprietary FIB-SEM format used at Janelia FarmAuthor:Stephan Preibisch (stephan. | Class | io | Fiji |
|
FieldMapView | Classes extending this class acquire a read-only Map interface to access its declared fields via the reflection API provided by Class. | Class | ini.trakem2.utils | Fiji |
|
Fiji_Archipelago | | Class | edu.utexas.clm.archipelago | Fiji |
|
FijiAppConfiguration | | Class | fiji.patches | Fiji |
|
FijiArchipelago | | Class | edu.utexas.clm.archipelago | Fiji |
|
FijiClassLoader | Special class loader for ImageJ 1. | Class | fiji | Fiji |
|
FijiService | Common Fiji initialization. | Interface | fiji | Fiji |
|
FijiTools | | Class | fiji | Fiji |
|
FileAndChannel | | Class | util | Fiji |
|
FileBottle | | Class | edu.utexas.clm.archipelago.network.translation | Fiji |
|
FileBottler | | Class | edu.utexas.clm.archipelago.network.translation | Fiji |
|
FileChunk | | Class | edu.utexas.clm.archipelago.data | Fiji |
|
FileCreation | | Class | util | Fiji |
|
FileDialogDecorator | | Class | fiji.gui | Fiji |
|
FileGroup | | Class | vib.app | Fiji |
|
FileGroupDialog | | Class | vib.app.gui | Fiji |
|
FileListener | | Interface | fsalign | Fiji |
|
FileObject | File abstraction for tools. | Interface | javax.tools | Fiji |
|
FileOpenMenuEntry | | Class | fiji.plugin.timelapsedisplay | Fiji |
|
FilePathRepair | A class to manage "file not found" problems. | Class | ini.trakem2.persistence | Fiji |
|
FilePatternDialog | Bio-Formats Importer file pattern dialog box. | Class | loci.plugins.in | Fiji |
|
FilePreparer | | Class | octree | Fiji |
|
Filer | This interface supports the creation of new files by an annotation processor. | Interface | javax.annotation.processing | Fiji |
|
FilerException | Indicates a Filer detected an attempt to open a file that would violate the guarantees provided by the Filer. | Class | javax.annotation.processing | Fiji |
|
FileTemplate | | Class | edu.utexas.clm.reconstructreader.trakem2 | Fiji |
|
FileTranslator | | Interface | edu.utexas.clm.archipelago.network.translation | Fiji |
|
Fill | | Class | tracing | Fiji |
|
Fill_holes | | Class | | Fiji |
|
FillerProgressCallback | | Interface | tracing | Fiji |
|
FillerThread | | Class | tracing | Fiji |
|
FillWindow | | Class | tracing | Fiji |
|
Filter | | Interface | ini.trakem2.utils | Fiji |
|
Filter | This interface is implemented by all classes performing operations on input images and returning output images | Interface | levelsets.filter | Fiji |
|
FilterEditor | | Class | ini.trakem2.imaging.filters | Fiji |
|
FilteredMemberList | Utility to construct a view of a symbol's members, filtering out unwanted elements such as synthetic ones. | Class | com.sun.tools.javac.model | Fiji |
|
FilterGuiPanel | | Class | fiji.plugin.trackmate.gui.panels.components | Fiji |
|
FilterPanel | | Class | fiji.plugin.trackmate.gui.panels | Fiji |
|
FinalAction | Class to launch the registration in bUnwarpJ. | Class | bunwarpj | Fiji |
|
FinalVoxelDimensions | An implementation of VoxelDimensions. | Class | mpicbg.spim.data.sequence | Fiji |
|
Find_Connected_Regions | | Class | util | Fiji |
|
Find_Minima | | Class | process3d | Fiji |
|
FindConnectedRegions | | Class | util | Fiji |
|
FindIt_ | | Class | | Fiji |
|
FindMinima | | Class | process3d | Fiji |
|
FineTuneProgressListener | | Interface | landmarks | Fiji |
|
FineTuneThread | | Class | landmarks | Fiji |
|
FirstIteration | Fuse one portion of a paralell fusion, supports no weightsAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.deconvolution | Fiji |
|
Fit_Sphere | | Class | vib | Fiji |
|
FitFunction | Interface for fitting-target functions. | Interface | mpicbg.imglib.algorithm.peak | Fiji |
|
FittingProgress | An implementation of the MultiTaskProgress interface that updates the ImageJ progress bar | Class | tracing | Fiji |
|
FixAbsolutePathsInHdf5Partitions | Older versions of multi-partition hdf5 export had a bug that caused absolute paths to be used in the master hdf5 to link into the partitions. | Class | bdv.ij.export | Fiji |
|
FixedModel | This model just applies some other TranslationInvariantModel without computing anything. | Class | mpicbg.pointdescriptor.model | Fiji |
|
FixedNameImgTitler | | Class | spim.process.fusion.export | Fiji |
|
FJ | | Class | featurej | Fiji |
|
FJ_About | | Class | featurej | Fiji |
|
FJ_Derivatives | | Class | featurej | Fiji |
|
FJ_Edges | | Class | featurej | Fiji |
|
FJ_Help | | Class | featurej | Fiji |
|
FJ_Hessian | | Class | featurej | Fiji |
|
FJ_Laplacian | | Class | featurej | Fiji |
|
FJ_Options | | Class | featurej | Fiji |
|
FJ_Panel | | Class | featurej | Fiji |
|
FJ_Statistics | | Class | featurej | Fiji |
|
FJ_Structure | | Class | featurej | Fiji |
|
FlagNode | | Class | fiji.plugin.trackmate.tracking.kdtree | Fiji |
|
Flags | Access flags and other modifiers for Java classes and members. | Class | com.sun.tools.javac.code | Fiji |
|
FlexWidgets | Custom widgets for configuring Bio-Formats Flex support. | Class | loci.plugins.config | Fiji |
|
FloatAccess | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
FloatAccess | | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
|
FloatArray | | Class | fiji.util | Fiji |
|
FloatArray | A dynamic array of float values. | Class | imagescience.array | Fiji |
|
FloatArray | Copyright: Copyright (c) 2006Version:1. | Class | mpi.fruitfly.math.datastructures | Fiji |
|
FloatArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
FloatArray | | Class | stitching | Fiji |
|
FloatArray2D | Title: PhaseCorrelation2D Copyright: Copyright (c) 2007 | Class | mpi.fruitfly.math.datastructures | Fiji |
|
FloatArray2D | | Class | stitching | Fiji |
|
FloatArray3D | Copyright: Copyright (c) 2007 This program is free software; you can redistribute it and/or | Class | mpi.fruitfly.math.datastructures | Fiji |
|
FloatArray3D | | Class | stitching | Fiji |
|
FloatArray4D | Copyright: Copyright (c) 2006Version:1. | Class | mpi.fruitfly.math.datastructures | Fiji |
|
FloatBuffer | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
FloatDynamicContainer | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
FloatDynamicContainerAccessor | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
FloatElement | | Class | view5d | Fiji |
|
FloatImage | An image containing up to 5D elements of type float. | Class | imagescience.image | Fiji |
|
FloatImageOperation | | Class | script.imglib.math.fn | Fiji |
|
FloatImagePlus | ImagePlusContainer for float-stored data. | Class | mpicbg.imglib.container.imageplus | Fiji |
|
FloatMatrix | | Class | vib | Fiji |
|
FloatMatrixN | | Class | math3d | Fiji |
|
FloatPointwise | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
FloatProcess | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
FloatProcessorChunk | | Class | edu.utexas.clm.archipelago.ijsupport | Fiji |
|
FloatProcessorT2 | | Class | ini.trakem2.imaging | Fiji |
|
FloatSet | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Class | imageware | Fiji |
|
FloatType | | Class | mpicbg.imglib.type.numeric.real | Fiji |
|
Flood_Fill | | Class | process3d | Fiji |
|
Floor | | Class | script.imglib.math | Fiji |
|
Flow | This pass implements dataflow analysis for Java programs. | Class | com.sun.tools.javac.comp | Fiji |
|
Flow3JColorNoiseMapper | This class maps a flow field in color spotnoise field. | Class | FlowJ | Fiji |
|
Flow3JDynamicColorMapper | This class maps dynamic color of a flow field. | Class | FlowJ | Fiji |
|
FlowJ_ | | Class | | Fiji |
|
FlowJColorNoiseMapper | This class maps a flow field in colored spotnoise format. | Class | FlowJ | Fiji |
|
FlowJDisplay | OFDisplay class implements the 2D display of 2D flow fields in different formats. | Class | FlowJ | Fiji |
|
FlowJDynamicColor | This is a class that implements 2D and 3D Dynamic Color Mapping. | Class | FlowJ | Fiji |
|
FlowJDynamicColorMapper | | Class | FlowJ | Fiji |
|
FlowJError | | Class | FlowJ | Fiji |
|
FlowJException | | Class | FlowJ | Fiji |
|
FlowJFleet | | Class | FlowJ | Fiji |
|
FlowJFlow | This class implements 2D flow fields and methods (including reading and writing and utility methods). | Class | FlowJ | Fiji |
|
FlowJLucas | This is a class that implements the Lucas and Kanade optical flow algorithm. | Class | FlowJ | Fiji |
|
FlowJMapper | This class is the superclass for the OF display mappers. | Class | FlowJ | Fiji |
|
FlowJQuiverMapper | This class maps a quiver map of a flow field. | Class | FlowJ | Fiji |
|
FlowJSingh | | Class | FlowJ | Fiji |
|
FlowJSpotNoise | This class implements spot noise displaying of flow fields. | Class | FlowJ | Fiji |
|
FlowJSpotNoiseMapper | This class maps spotnoise of a flow field. | Class | FlowJ | Fiji |
|
FlowJUras | | Class | FlowJ | Fiji |
|
FlowJUserInterface | This class links the FlowJ classes to the ImageJ interface. | Class | FlowJ | Fiji |
|
FloydSteinbergDithering | | Class | mpicbg.imglib.algorithm.floydsteinberg | Fiji |
|
FMath | Performs elementary mathematical operations and function evaluations. | Class | imagescience.utility | Fiji |
|
FMath | The FMath class provides methods for carrying out a number of elementary mathematical operations. | Class | imageware | Fiji |
|
FolderWatcher | | Class | fsalign | Fiji |
|
ForLoopTree | A tree node for a basic 'for' loop statement. | Interface | com.sun.source.tree | Fiji |
|
FormatEntry | A list entry for the configuration window's Formats tab. | Class | loci.plugins.config | Fiji |
|
Formatter | Converts floating-point numbers to formatted strings. | Class | imagescience.utility | Fiji |
|
ForwardingFileObject | Forwards calls to a given file object. | Class | javax.tools | Fiji |
|
ForwardingJavaFileManager | Forwards calls to a given file manager. | Class | javax.tools | Fiji |
|
ForwardingJavaFileObject | Forwards calls to a given file object. | Class | javax.tools | Fiji |
|
FourierConvolution | | Class | mpicbg.imglib.algorithm.fft | Fiji |
|
FourierTransform | | Class | mpicbg.imglib.algorithm.fft | Fiji |
|
Frangi_ | | Class | fiji.features | Fiji |
|
FreeHandProfile | | Class | ini.trakem2.display | Fiji |
|
FromContinuousBranches | | Class | fiji.plugin.trackmate.graph | Fiji |
|
FromOMETranslator | Abstract base class for all io. | Class | io.scif.ome.translators | Fiji |
|
FS_Align_TrakEM2 | | Class | fsalign | Fiji |
|
FSAlignListener | | Class | fsalign | Fiji |
|
FSInfo | Get meta-info about files. | Class | com.sun.tools.javac.file | Fiji |
|
FSLoader | A class to rely on memory only; except images which are rolled from a folder or their original location and flushed when memory is needed for more. | Class | ini.trakem2.persistence | Fiji |
|
FullInfoMesh | | Class | customnode | Fiji |
|
Function | | Interface | mpicbg.imglib.function | Fiji |
|
Function1 | Interface for function that compute values from a single input and store it in Author:Jean-Yves Inevez | Interface | fiji.plugin.trackmate.graph | Fiji |
|
Function2 | Interface for function that compute values from a two inputs and store it in Author:Jean-Yves Inevez | Interface | fiji.plugin.trackmate.graph | Fiji |
|
Fusion | Manages the fusion for all types except the overlayfusionAuthor:Stephan Preibisch (stephan. | Class | mpicbg.stitching.fusion | Fiji |
|
Fusion | | Class | spim.fiji.plugin.fusion | Fiji |
|
FusionControl | | Class | mpicbg.spim.fusion | Fiji |
|
FusionHelper | | Class | spim.process.fusion | Fiji |
|
FusionImageLoader | This ImgLoader loads images that represent a 3D stack as a sequence of slice with one image file per slice, such as created by Stephan | Class | bdv.ij.export.imgloader | Fiji |
|
FusionPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
|
FusionResult | | Class | bdv.ij.export | Fiji |
|
GaborCos | This class implements a Gabor (even) cosine wave 1d convolution kernel for separated convolutions. | Class | volume | Fiji |
|
GaborSin | This class implements a Gabor (odd) sine wave 1d convolution kernel for separated convolutions. | Class | volume | Fiji |
|
Gamma | | Class | imglib.ops.operator.unary | Fiji |
|
GammaFunction | | Class | pal.math | Fiji |
|
GammaGenerator | Gamma random number generator of positive integer order. | Class | imagescience.random | Fiji |
|
GapClosingCostFunction | Gap closing cost function used with LAPTracker. | Class | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
|
Gauss | | Class | script.imglib.algorithm | Fiji |
|
GaussContent | | Class | mpicbg.spim.fusion | Fiji |
|
GaussContentFactory | | Class | mpicbg.spim.fusion | Fiji |
|
Gaussian | This is a 1D separated 0-th order Gaussian convolution kernel. | Class | volume | Fiji |
|
Gaussian2D | This is a 2D separated 0 order Gaussian convolution kernel. | Class | volume | Fiji |
|
Gaussian3D | This is a 3D separated 0 order Gaussian convolution kernel. | Class | volume | Fiji |
|
Gaussian_Stack_Focuser | | Class | sc.fiji.timelapse | Fiji |
|
GaussianBlur | Smooth with a Gaussian. | Class | ini.trakem2.imaging.filters | Fiji |
|
GaussianConvolution | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
|
GaussianConvolution2 | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
|
GaussianConvolution3 | Computes a Gaussian Convolution on any Type(A) for which is defined how to convert it into a NumericType(B) on which the convolution is performed and back to the desired output Type(C). | Class | mpicbg.imglib.algorithm.gauss | Fiji |
|
GaussianConvolution4 | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
|
GaussianConvolutionReal | | Class | mpicbg.imglib.algorithm.gauss | Fiji |
|
GaussianDerivative | This class implement a scale space Gaussian n-th order derivative 1d convolution kernel for separated convolutions. | Class | volume | Fiji |
|
GaussianGenerationCallback | | Interface | features | Fiji |
|
GaussianGenerator | Gaussian random number generator. | Class | imagescience.random | Fiji |
|
GaussianMaskFit | | Class | process | Fiji |
|
GaussianMultiDLM | A n-dimensional Gaussian peak function, representing an elliptical Gaussian, with axis constrained to be aligned with the main axis. | Class | mpicbg.imglib.algorithm.peak | Fiji |
|
GaussianPeakFitterND | A simple class fit a gaussian to the peaks in a n-dim, 0-background The gaussian can have a different sigma in any direction, but the ellipse main axes still need | Class | mpicbg.imglib.algorithm.peak | Fiji |
|
GaussianStackFocuser | | Class | spimopener | Fiji |
|
Gen | This pass maps flat Java (i. | Class | com.sun.tools.javac.jvm | Fiji |
|
General | | Class | mpi.fruitfly.math | Fiji |
|
GeneralizedDEOptimizer | Provides an general interface to the DifferentialEvolution class that is not tied to a certain number of parameters (as DifferentialEvolution is). | Class | pal.math | Fiji |
|
Generic_Resave_HDF5 | | Class | spim.fiji.plugin.resave | Fiji |
|
GenericAffineTile2D | | Class | mpicbg.trakem2.align | Fiji |
|
GenericByteType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
GenericCursorLink | | Class | mpicbg.imglib.cursor.link | Fiji |
|
GenericDialogAppender | | Interface | spim.fiji.plugin.util | Fiji |
|
GenericDialogPlus | The GenericDialogPlus class enhances the GenericDialog by a few additional methods. | Class | fiji.util.gui | Fiji |
|
GenericIntType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
GenericLoadParseQueryXML | Interface for interactive parsing of spimdata XMLsAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.plugin.queryXML | Fiji |
|
GenericShortType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
GeodesicActiveContour | Caselles et. | Class | levelsets.algorithm | Fiji |
|
GeometricHasher | Class that actually computes the geometric hashingAuthor:Stephan Preibisch (stephan. | Class | spim.process.interestpointregistration.geometrichashing | Fiji |
|
GeometricHashing | | Class | spim.process.interestpointregistration.geometrichashing | Fiji |
|
GeometricHashingPairwise | | Class | spim.process.interestpointregistration.geometrichashing | Fiji |
|
GeometricHashingParameters | | Class | spim.process.interestpointregistration.geometrichashing | Fiji |
|
GeometryCreator | | Class | octree | Fiji |
|
GeometryCreator | This class is a helper class whose main task is to create Geometry objects for a specified axis and direction. | Class | voltex | Fiji |
|
Gif_Stack_Writer | | Class | io | Fiji |
|
GlobalErrorStatistics | | Interface | mpicbg.spim.registration.bead.error | Fiji |
|
GlobalErrorStatisticsImpl | | Class | mpicbg.spim.registration.bead.error | Fiji |
|
GlobalOpt | | Class | spim.process.interestpointregistration | Fiji |
|
GlobalOptimization | | Class | mpicbg.stitching | Fiji |
|
GlobalOptimizationSubset | Defines a subset of views that need to be matched and then a global optimization In case of a registration of individual timepoints, each timepoint would be one | Class | spim.process.interestpointregistration.optimizationtypes | Fiji |
|
GlobalOptimizationType | A certain type of global optimization, must be able to define all view pairs that need to be matched and optimized inidivdually | Class | spim.process.interestpointregistration.optimizationtypes | Fiji |
|
Gradient | | Class | fiji.plugin.volumeviewer | Fiji |
|
Gradient | | Class | process3d | Fiji |
|
Gradient_ | | Class | process3d | Fiji |
|
GradientWatershed | This class labels an image where the objects in question have edges that are defined by sharp intensity gradients and have | Class | mpicbg.imglib.algorithm.labeling | Fiji |
|
Graph | Class wrapping some basic structures that are used to represent a graph. | Class | graphcut | Fiji |
|
Graph | | Class | ini.trakem2.analysis | Fiji |
|
Graph | This class represents an undirected graph to allow visiting the skeleton in an efficient way | Class | sc.fiji.analyzeSkeleton | Fiji |
|
Graph_Cut | Plugin interface to the graph cut algorithm. | Class | graphcut | Fiji |
|
GraphContentNode | GraphContentNode is a 3D Viewer ContentNode designed to be the structure returned by the AnalyzedGraph class as a Java 3D representation of the vascular tree | Class | volumeCalculator | Fiji |
|
GraphCut | Class implementing the grach cut algorithm. | Class | graphcut | Fiji |
|
GrapherDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
GrapherPanel | | Class | fiji.plugin.trackmate.gui | Fiji |
|
GraphFrame | | Class | fiji.plugin.timelapsedisplay | Fiji |
|
GraphFrame | | Class | spim.process.interestpointregistration.registrationstatistics | Fiji |
|
GraphicalMediaWikiClient | | Class | fiji | Fiji |
|
GraphicsSource | | Interface | ini.trakem2.display.graphics | Fiji |
|
GraphSegmentSplitter | | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
|
GraphUtils | | Class | fiji.plugin.trackmate.graph | Fiji |
|
GrayMorphology_ | | Class | | Fiji |
|
Green | | Class | script.imglib.color | Fiji |
|
GreyScaleFilter | | Class | levelsets.filter | Fiji |
|
GreyTransformation | | Class | vib.app.module | Fiji |
|
GreyValueErosion | Performs a grey value erosion operation on the input using a defineable mask. | Class | levelsets.filter | Fiji |
|
GridLayout | | Class | stitching | Fiji |
|
GridType | | Class | plugin | Fiji |
|
GroupingMode | | Class | ini.trakem2.display | Fiji |
|
Gui | | Class | fiji.plugin.volumeviewer | Fiji |
|
GuiBuilder | | Class | gui | Fiji |
|
GUIButton | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
GUIHelper | | Class | spim.fiji.plugin.util | Fiji |
|
GUIMaker | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
GUIMenuItem | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
GuiUtils | | Class | fiji.plugin.trackmate.gui | Fiji |
|
HandleExtraFileTypes | | Class | | Fiji |
|
Harris_Corner_Detector | | Class | process3d | Fiji |
|
HDF5AccessHack | | Class | bdv.img.imaris | Fiji |
|
Hdf5ImageLoader | | Class | bdv.img.hdf5 | Fiji |
|
Hdf5VolatileShortArrayLoader | | Class | bdv.img.hdf5 | Fiji |
|
HDFPreprocessor | | Class | io.scif.formats.imaris | Fiji |
|
HDFUtils | | Class | io.scif.formats.imaris | Fiji |
|
HDFWriter | | Class | io.scif.formats.imaris | Fiji |
|
HeartBeat | | Class | edu.utexas.clm.archipelago.data | Fiji |
|
Helmholtz_Analysis | This plugin uses the Helmholtz equation to estimage the wavelength of a harmonic image. | Class | | Fiji |
|
HelpDialog | | Class | bdv.tools | Fiji |
|
Hessian | Computes Hessian eigenimages. | Class | imagescience.feature | Fiji |
|
Hessian | This class implements computing the Hessian tensor matrix of an image, and computing the determinant (to detect blobs) and largest eigenvalues (to detect edges). | Class | volume | Fiji |
|
Hessian_CP_Measures | | Class | features | Fiji |
|
HessianEvalueProcessor | | Class | features | Fiji |
|
Histogram | | Class | mpicbg.imglib.algorithm.histogram | Fiji |
|
Histogram | An histogram of the image (or an image computed from an IFunction) between its minimum and maximum values, | Class | script.imglib.analysis | Fiji |
|
Histogram | | Class | spim.fiji.plugin.thinout | Fiji |
|
Histogram2D | Represents the creation of a 2D histogram between two images. | Class | algorithms | Fiji |
|
Histogram_2D | | Class | util | Fiji |
|
HistogramBin | HistogramBin is used by to represent the bins of a histogram. | Class | mpicbg.imglib.algorithm.histogram | Fiji |
|
HistogramBinFactory | The HistogramBinFactory interface is used by Histogram to generate HistogramBins and HistogramKeys. | Interface | mpicbg.imglib.algorithm.histogram | Fiji |
|
HistogramKey | HistogramKeys are used by Histogram to key HistogramBins Author:Larry Lindsey | Class | mpicbg.imglib.algorithm.histogram | Fiji |
|
HistogramMatcher | | Class | histogram2 | Fiji |
|
HistogramPlot | | Class | histogram2 | Fiji |
|
History | A class to represent a generic undo/redo history. | Class | ini.trakem2.utils | Fiji |
|
HomogeneousMapping | | Class | mpicbg.panorama | Fiji |
|
HomographyModel2D | | Class | mpicbg.trakem2.transform | Fiji |
|
HoughLineTransform | A class that extends HoughTransform to handle Hough Line voting over an edge map. | Class | mpicbg.imglib.algorithm.transformation | Fiji |
|
HoughLineTransform | | Class | script.imglib.algorithm | Fiji |
|
HoughTransform | | Class | mpicbg.imglib.algorithm.transformation | Fiji |
|
HSB | | Class | script.imglib.color | Fiji |
|
HSBOp | | Class | script.imglib.color.fn | Fiji |
|
HtmlPageLoader | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
Hue | | Class | script.imglib.color | Fiji |
|
HuiskenImageLoader | This ImgLoader implementation uses Benjamin Schmid's to load images in Jan Husiken's format. | Class | bdv.ij.export.imgloader | Fiji |
|
HungarianAlgorithm | An implementation of the classic Hungarian algorithm for the assignment problem. | Class | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
|
HybridDateFormat | SimpleDateFormat provides convenient methods for parsing and formatting dates using Gregorian calendars (see java. | Class | | Fiji |
|
HyperSphereIterator | Iterate over all pixels in an n-dimensional sphere. | Class | mpicbg.imglib.cursor.special | Fiji |
|
Hyperstack_rearranger | | Class | fiji.stacks | Fiji |
|
HyperStackDisplayer | | Class | fiji.plugin.trackmate.visualization.hyperstack | Fiji |
|
HyperStackDisplayerFactory | | Class | fiji.plugin.trackmate.visualization.hyperstack | Fiji |
|
HyperVolume | This is a class that implements a float hyper (4D) volumes and operations including convolutions on it. | Class | volume | Fiji |
|
Hypervolume_Opener | Opens a folder of image stacks as one big stack ("Hypervolume"). | Class | | Fiji |
|
Hypot | | Class | script.imglib.math | Fiji |
|
I5D_about | | Class | | Fiji |
|
I5DResource | Provides Image5D utility methods. | Class | imagescience.utility | Fiji |
|
I5DVirtualStack | This class represents an array of disk-resident images. | Class | i5d | Fiji |
|
Icns_Reader | | Class | io | Fiji |
|
Icns_Writer | | Class | io | Fiji |
|
IcnsCodec | | Class | iconsupport.icns | Fiji |
|
ICO_Reader | | Class | io | Fiji |
|
ICO_Writer | | Class | io | Fiji |
|
ICOConstants | Provides constants used with ICO format. | Class | net.sf.image4j.codec.ico | Fiji |
|
ICODecoder | Decodes images in ICO format. | Class | net.sf.image4j.codec.ico | Fiji |
|
ICOEncoder | Encodes images in ICO format. | Class | net.sf.image4j.codec.ico | Fiji |
|
ICOImage | Contains a decoded ICO image, as well as information about the source encoded ICO image. | Class | net.sf.image4j.codec.ico | Fiji |
|
IconEntry | Represents an IconEntry structure, which contains information about an ICO image. | Class | net.sf.image4j.codec.ico | Fiji |
|
IconSuite | | Class | iconsupport.icns | Fiji |
|
ICP | | Class | mpicbg.icp | Fiji |
|
ICSTranslator | Container class for to and from ICS/OME formatsAuthor:Mark Hiner hinerm at gmail. | Class | io.scif.ome.translators | Fiji |
|
IcyTrackExporter | | Class | fiji.plugin.trackmate.action | Fiji |
|
IcyTrackFormatWriter | | Class | fiji.plugin.trackmate.io | Fiji |
|
IcyXmlReader | A reader for the XML files generated in the TrackManager of the Icy software The reader requires a calibration s to operate, so as to generate a proper | Class | fiji.plugin.trackmate.io | Fiji |
|
IdDialog | Bio-Formats Importer id chooser dialog box. | Class | loci.plugins.in | Fiji |
|
IdentifierTree | A tree node for an identifier expression. | Interface | com.sun.source.tree | Fiji |
|
Identify | | Class | lineage | Fiji |
|
IDT_Interpolate_Binary | | Class | vib | Fiji |
|
IEEEremainder | | Class | script.imglib.math | Fiji |
|
IepGui | GUI for the plugin Image_Expression_Parser When launched it displays a window allowing the user to enter a mathematical expression, | Class | fiji.process | Fiji |
|
IFilter | | Interface | ini.trakem2.imaging.filters | Fiji |
|
IFormatWidgets | Interface for defining custom widgets for a specific file format reader. | Interface | loci.plugins.config | Fiji |
|
IFT_ | | Class | process3d | Fiji |
|
IfTree | A tree node for an 'if' statement. | Interface | com.sun.source.tree | Fiji |
|
IFunction | | Interface | script.imglib.math.fn | Fiji |
|
IHDF5Access | | Interface | bdv.img.imaris | Fiji |
|
IJ1LogService | A log service adapter for ImageJ 1. | Class | fiji | Fiji |
|
IJ1Patcher | Patch ij. | Class | fiji | Fiji |
|
IJ1StatusService | A status service adapter for ImageJ 1. | Class | fiji | Fiji |
|
IJ_Alt_Key_Listener | | Class | fiji | Fiji |
|
IJ_Robot | | Class | | Fiji |
|
IJAdapter | | Class | ij3d | Fiji |
|
IJError | A class to easily show the stack trace of an error in different operating systems. | Class | ini.trakem2.utils | Fiji |
|
IJEventMulticaster | Multicaster for events special to ImageJ Example how to implement an object, which fires DisplayChangeEvents using the | Class | | Fiji |
|
IJLogger | | Class | edu.utexas.clm.archipelago.util | Fiji |
|
IJPopupLogger | | Class | edu.utexas.clm.archipelago.util | Fiji |
|
IJStatusEchoer | Echoes status messages to the ImageJ status bar. | Class | loci.plugins.util | Fiji |
|
Illumination | Defines an illumination direction which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
|
IlluminationChannel | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
|
Image | Abstract base class for images containing up to 5D elements. | Class | imagescience.image | Fiji |
|
Image | | Class | mpicbg.imglib.image | Fiji |
|
Image3DMenubar | | Class | ij3d | Fiji |
|
Image3DUniverse | | Class | ij3d | Fiji |
|
Image5D | (t). | Class | i5d | Fiji |
|
Image5D_Extensions | Macro extensions for Image5D. | Class | | Fiji |
|
Image5D_Stack_to_RGB | Converts the current timeframe of an Image5D to an RGB stack using the current view settings. | Class | | Fiji |
|
Image5D_to_Stack | | Class | | Fiji |
|
Image5DAdapter | | Class | adapter | Fiji |
|
Image5DCanvas | | Class | i5d.gui | Fiji |
|
Image5DLayout | image and a channelControl panel to the right of the image. | Class | i5d.gui | Fiji |
|
Image5DWindow | ImageWindow for Image5Ds. | Class | i5d.gui | Fiji |
|
Image_Expression_Parser | Image expression parser This plugins parses mathematical expressions and compute results using images as variables. | Class | fiji.process | Fiji |
|
Image_Fusion | | Class | spim.fiji.plugin | Fiji |
|
ImageAccess | ImageAccess is an interface layer to facilitate the access to the pixels of ImageJ images. | Class | imageware | Fiji |
|
ImageAccess | ImageAccess is an interface layer to facilitate the access to the pixels of ImageJ images. | Class | wavelets | Fiji |
|
ImageAdapter | | Class | adapter | Fiji |
|
ImageArrayConverter | | Class | mpi.fruitfly.general | Fiji |
|
ImageBlockDeblock | A FijiArchipelago-compatible class for splitting an image into smaller blocks, then recombining into the original image shape, potentially after processing. | Class | edu.utexas.archipelago.image | Fiji |
|
ImageButton | ImageButton - A button component with an image in itAuthor:DTAI, IncorporatedSee Also:Serialized Form | Class | vib.segment | Fiji |
|
ImageBytes | Represent an image with byte arrays: 2 channels: grey + alpha | Class | ini.trakem2.persistence | Fiji |
|
ImageCalculator | | Class | mpicbg.imglib.algorithm.math | Fiji |
|
ImageCalculatorInPlace | | Class | mpicbg.imglib.algorithm.math | Fiji |
|
ImageCalculatorRevised | This plugin implements the Process/Image Calculator command. | Class | util | Fiji |
|
ImageCanvas | | Class | view5d | Fiji |
|
ImageCanvas3D | | Class | ij3d | Fiji |
|
ImageCollectionElement | | Class | mpicbg.stitching | Fiji |
|
ImageComputation | | Interface | script.imglib.math.fn | Fiji |
|
ImageContainer | | Class | levelsets.ij | Fiji |
|
ImageConverter | | Class | mpicbg.imglib.algorithm.math | Fiji |
|
ImageData | | Interface | ini.trakem2.display | Fiji |
|
ImageDirectory | | Class | org.imagearchive.lsm.reader.info | Fiji |
|
ImageErr | | Class | view5d | Fiji |
|
ImageFactory | | Class | mpicbg.imglib.image | Fiji |
|
ImageFileFilter | Filters out non-accepted image formats. | Class | ini.trakem2.io | Fiji |
|
ImageFileHeader | | Class | ini.trakem2.io | Fiji |
|
ImageFilter | | Class | mpi.fruitfly.registration | Fiji |
|
ImageFilter | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
ImageFocusListener | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
ImageFunction | | Class | script.imglib.math.fn | Fiji |
|
ImageInformation | | Class | stitching | Fiji |
|
ImageInterpolation | | Class | mpicbg.stitching.fusion | Fiji |
|
ImageJ | Main entry point into ImageJ. | Class | net.imagej | Fiji |
|
ImageJ1UI | Simple ImageJ 1. | Class | fiji.updater | Fiji |
|
ImageJ3DViewer | | Class | ij3d | Fiji |
|
ImageJ_3D_Viewer | | Class | ij3d | Fiji |
|
ImageJCommandListener | Intercept ImageJ menu commands if the current active image is a FakeImagePlus (from a ini. | Class | ini.trakem2.display | Fiji |
|
ImageJFunctions | | Class | mpicbg.imglib.image.display.imagej | Fiji |
|
ImageJVirtualDisplay | | Class | mpicbg.imglib.image.display.imagej | Fiji |
|
ImageJVirtualStack | | Class | mpicbg.imglib.image.display.imagej | Fiji |
|
ImageListener | | Class | fsalign | Fiji |
|
ImageMetaData | | Class | vib.app | Fiji |
|
ImageOpener | Reads in an imglib Image using Bio-Formats. | Class | mpicbg.imglib.io | Fiji |
|
ImageOverlay | This class implements an overlay based on an image. | Class | graphcut | Fiji |
|
ImageOverlay | This class implements an overlay based on an image. | Class | siox | Fiji |
|
ImagePane | GUI Component to display a BufferedImage with a zoom factor and an optional selection. | Class | org.siox.example | Fiji |
|
ImagePlusAdapter | | Class | mpicbg.imglib.image | Fiji |
|
ImagePlusChooser | | Class | fiji.plugin.trackmate.gui.panels.components | Fiji |
|
ImagePlusContainer | A Container that stores data in an aray of 2d-slices each as a linear array of basic types. | Class | mpicbg.imglib.container.imageplus | Fiji |
|
ImagePlusContainerFactory | Factory that creates an appropriate ImagePlusContainer. | Class | mpicbg.imglib.container.imageplus | Fiji |
|
ImagePlusCursor | Basic Iterator for a ImagePlusContainersAuthor:Stephan Preibisch, Stephan Saalfeld | Class | mpicbg.imglib.cursor.imageplus | Fiji |
|
ImagePlusCursor2D | Basic Iterator for 2d ImagePlusContainersAuthor:Stephan Saalfeld, Stephan Saalfeld | Class | mpicbg.imglib.cursor.imageplus | Fiji |
|
ImagePlusImgLoader | This BasicImgLoader implementation returns a wrapped, converted ImagePlus. | Class | bdv.ij.export.imgloader | Fiji |
|
ImagePlusLocalizableByDimCursor | Positionable for a ImagePlusContainersAuthor:Stephan Preibisch, Stephan Saalfeld | Class | mpicbg.imglib.cursor.imageplus | Fiji |
|
ImagePlusLocalizableByDimOutOfBoundsCursor | Positionable with OutOfBoundsStrategy for a ImagePlusContainers | Class | mpicbg.imglib.cursor.imageplus | Fiji |
|
ImagePlusLocalizableCursor | Localizing Iterator for a ImagePlusContainersAuthor:Stephan Preibisch, Stephan Saalfeld | Class | mpicbg.imglib.cursor.imageplus | Fiji |
|
ImagePlusLocalizablePlaneCursor | | Class | mpicbg.imglib.cursor.imageplus | Fiji |
|
ImagePlusReader | A high-level reader for ImagePlus objects. | Class | loci.plugins.in | Fiji |
|
ImagePlusTimePoint | | Class | mpicbg.stitching | Fiji |
|
ImagePortion | | Class | spim.process.fusion | Fiji |
|
ImagePreprocessor | Any class implementing this interface is suitable as an image preprocessor for a TrakEM2 project. | Interface | ini.trakem2.imaging | Fiji |
|
ImagePreview | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
ImageProcessorReader | A low-level reader for ImageProcessor objects. | Class | loci.plugins.util | Fiji |
|
ImageProcessorSource | Retrieves ImageJ image processors from an image reader. | Class | loci.plugins.util | Fiji |
|
ImageProgressContainer | | Class | levelsets.ij | Fiji |
|
ImageProperties | | Interface | mpicbg.imglib.container | Fiji |
|
ImageSaver | Provides the necessary thread-safe image file saver utilities. | Class | ini.trakem2.io | Fiji |
|
ImageScience | Contains the name and version number of the ImageScience library. | Class | imagescience | Fiji |
|
ImageStackImageLoader | | Class | bdv.img.imagestack | Fiji |
|
ImageStatistics | | Class | net.imglib2.algorithm.math | Fiji |
|
ImageTransform | | Class | mpicbg.imglib.algorithm.transformation | Fiji |
|
ImageUtil | Provides utility methods for handling images (java. | Class | net.sf.image4j.util | Fiji |
|
ImageWare | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Interface | imageware | Fiji |
|
ImageWindow3D | | Class | ij3d | Fiji |
|
Imaris | | Class | bdv.img.imaris | Fiji |
|
ImarisFormat | SCIFIO Format supporting the writer for Imaris 5. | Class | io.scif.formats | Fiji |
|
ImarisImageLoader | | Class | bdv.img.imaris | Fiji |
|
ImarisVolatileByteArrayLoader | | Class | bdv.img.imaris | Fiji |
|
ImarisVolatileFloatArrayLoader | | Class | bdv.img.imaris | Fiji |
|
ImarisVolatileShortArrayLoader | | Class | bdv.img.imaris | Fiji |
|
ImarisWriter | | Class | io.scif.formats.imaris | Fiji |
|
ImgExport | | Interface | spim.process.fusion.export | Fiji |
|
ImgExportTitle | | Interface | spim.process.fusion.export | Fiji |
|
ImgLib | A simple wrapper class that is supposed to contain only functions for scripting. | Class | script.imglib | Fiji |
|
ImgLib1 | Provides non-copying wrapping from Imglib1 to Imglib2 (cell, array)Author:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
ImgLib2 | Provides non-copying wrapping from Imglib2 to Imglib1 (cell, array)Author:Stephan Preibisch (stephan. | Class | mpicbg.imglib.wrapper | Fiji |
|
ImgLib2Temp | | Class | spim.fiji | Fiji |
|
ImgLibAbs | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibAdd | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibArcCosine | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibArcSine | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibArcTangent | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibArcTangent2 | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibBandPassFilter | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibCeil | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibComparison | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibCosine | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibDithering | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibDivide | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibException | | Class | mpicbg.imglib.exception | Fiji |
|
ImgLibExp | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibFloor | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibFunction | | Interface | fiji.expressionparser.function | Fiji |
|
ImgLibGaussConv | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibLog | | Class | fiji.expressionparser.function | Fiji |
|
ImgLibLogical | | Class | fiji.expressionparser.function | Fiji |
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ImgLibModulus | | Class | fiji.expressionparser.function | Fiji |
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ImgLibMultiply | | Class | fiji.expressionparser.function | Fiji |
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ImgLibNormalize | | Class | fiji.expressionparser.function | Fiji |
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ImgLibNumberFactory | This is a number factory that will be used to generate internal representation of number within the expression parser logic. | Class | fiji.expressionparser | Fiji |
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ImgLibOperatorSet | | Class | fiji.expressionparser | Fiji |
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ImgLibParser | | Class | fiji.expressionparser | Fiji |
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ImgLibPower | | Class | fiji.expressionparser.function | Fiji |
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ImgLibRound | | Class | fiji.expressionparser.function | Fiji |
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ImgLibSaver | | Class | mpicbg.spim.io | Fiji |
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ImgLibSine | | Class | fiji.expressionparser.function | Fiji |
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ImgLibSquareRoot | | Class | fiji.expressionparser.function | Fiji |
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ImgLibSubtract | | Class | fiji.expressionparser.function | Fiji |
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ImgLibTangent | | Class | fiji.expressionparser.function | Fiji |
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ImgLibUMinus | | Class | fiji.expressionparser.function | Fiji |
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ImgLibUtils | | Class | fiji.expressionparser | Fiji |
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ImgLibVolume | This class encapsulates an mpicbg. | Class | ini.trakem2.utils | Fiji |
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ImgLoader | A BasicImgLoader that is able to also provide each image converted to FloatType. | Interface | mpicbg.spim.data.sequence | Fiji |
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ImgLoaderHint | | Interface | mpicbg.spim.data.generic.sequence | Fiji |
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ImgLoaderHints | Default set of ImgLoaderHint. | Class | mpicbg.spim.data.generic.sequence | Fiji |
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ImgLoaderIo | Annotation for a class that creates a BasicImgLoader for a specific format (the format is specified in the XML "ImageLoader" element). | Class | mpicbg.spim.data.generic.sequence | Fiji |
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ImgLoaders | | Class | mpicbg.spim.data.generic.sequence | Fiji |
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ImgPanel | | Class | view5d | Fiji |
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ImgTitler | | Interface | spim.process.fusion.export | Fiji |
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Implicit_Interpolate_Binary | | Class | | Fiji |
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Importer | Core logic for the Bio-Formats Importer ImageJ plugin. | Class | loci.plugins.in | Fiji |
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ImporterDialog | Abstract superclass of importer dialogs. | Class | loci.plugins.in | Fiji |
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ImporterMetadata | Helper class for storing original metadata key/value pairs. | Class | loci.plugins.in | Fiji |
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ImporterOptions | Helper class for managing Bio-Formats Importer options. | Class | loci.plugins.in | Fiji |
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ImporterPrompter | Helper class for presenting the user with dialog boxes for configuring importer options. | Class | loci.plugins.in | Fiji |
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ImportPlugIn | ImageJ plugin to import a raw image from xml/hdf5. | Class | bdv.ij | Fiji |
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ImportProcess | Manages the import preparation process. | Class | loci.plugins.in | Fiji |
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ImportStep | An enumeration of the steps in the import preparation process. | Class | loci.plugins.in | Fiji |
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ImportTree | A tree node for an import statement. | Interface | com.sun.source.tree | Fiji |
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IndependentSpotFeatureAnalyzer | | Class | fiji.plugin.trackmate.features.spot | Fiji |
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IndividualTimepointRegistration | A registration type where each timepoint is registered individuallyAuthor:Stephan Preibisch (stephan. | Class | spim.process.interestpointregistration.optimizationtypes | Fiji |
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Infer | Helper class for type parameter inference, used by the attribution phase. | Class | com.sun.tools.javac.comp | Fiji |
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Inference | | Class | inference | Fiji |
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InferenceCaller | | Interface | inference | Fiji |
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InfoFrame | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
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InfoHeader | Represents a bitmap InfoHeader structure, which provides header information. | Class | net.sf.image4j.codec.bmp | Fiji |
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InfoNode | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
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InfoPane | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
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InfoPanel | | Class | vib.segment | Fiji |
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InitFilterDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
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InitFilterPanel | | Class | fiji.plugin.trackmate.gui.panels | Fiji |
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InitializeViewerState | | Class | bdv.tools | Fiji |
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InputActionBindings | Maintains lists of ActionMaps and InputMaps, which are chained to a concatenated InputMap and a | Class | bdv.viewer | Fiji |
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InputCheck | This class implements some basic checks for the input image data. | Class | algorithms | Fiji |
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InputStreamLogger | | Class | edu.utexas.clm.archipelago.util | Fiji |
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Insert_Stack | | Class | video2 | Fiji |
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InspectJar | | Class | fiji | Fiji |
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InspectPatchTrianglesMode | A view-only mode that shows, using LayerSet. | Class | ini.trakem2.display.inspect | Fiji |
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InstallWizard | A wizard for walking users through installation of third party libraries and plugins used by the Bio-Formats plugins. | Class | loci.plugins.config | Fiji |
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InstanceOfTree | A tree node for an 'instanceof' expression. | Interface | com.sun.source.tree | Fiji |
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IntAccess | | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
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IntArray | | Class | fiji.util | Fiji |
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IntArray | A dynamic array of int values. | Class | imagescience.array | Fiji |
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IntArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
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IntArrayList | An ArrayList that uses primitive ints for the key rather than objects to avoid costly usage of Integer wrappers. | Class | org.siox.util | Fiji |
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IntArraySorter | Sorts and int[] according to a custom comparator. | Class | algorithms | Fiji |
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IntComparator | | Interface | algorithms | Fiji |
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IntDynamicContainer | | Class | mpicbg.imglib.container.dynamic | Fiji |
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IntDynamicContainerAccessor | | Class | mpicbg.imglib.container.dynamic | Fiji |
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IntegerElement | | Class | view5d | Fiji |
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IntegerField | | Class | ini.trakem2.utils | Fiji |
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IntegerPattern | Class with static methods to deal with integer patterns defining ranges of numbers and create String instances based on simple expressions like {aaa} or {t}. | Class | mpicbg.spim.data.sequence | Fiji |
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IntegerType | | Interface | mpicbg.imglib.type.numeric | Fiji |
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IntegerTypeConverter | Converts an IntegerType into another one without doing any range checkingAuthor:Stephan Preibisch | Class | mpicbg.imglib.function | Fiji |
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IntegerTypeDisplay | | Class | mpicbg.imglib.image.display | Fiji |
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IntegerTypeImpl | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
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IntegralHistogram2d | An integral histogram for 2d images. | Class | ini.trakem2.imaging | Fiji |
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IntegralImage | n-dimensional integral image that stores sums using type . | Class | mpicbg.imglib.algorithm.integral | Fiji |
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IntegralImage3d | | Class | mpicbg.spim.segmentation | Fiji |
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IntegralImageDouble | Special implementation for double using the basic type to sum up the individual lines. | Class | mpicbg.imglib.algorithm.integral | Fiji |
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IntegralImageLong | Special implementation for long using the basic type to sum up the individual lines. | Class | mpicbg.imglib.algorithm.integral | Fiji |
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IntegralImageMipMaps | | Class | ini.trakem2.persistence | Fiji |
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Interactive_3D_Surface_Plot | | Class | | Fiji |
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Interactive_Remove_Detections | | Class | spim.fiji.plugin | Fiji |
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InteractiveBehavior | This class interprets mouse and keyboard events and invokes the desired actions. | Class | ij3d.behaviors | Fiji |
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InteractiveDoG | An interactive tool for determining the required sigma and peak thresholdAuthor:Stephan Preibisch | Class | mpicbg.spim.segmentation | Fiji |
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InteractiveIntegral | An interactive tool for determining the required radius and peak thresholdAuthor:Stephan Preibisch | Class | mpicbg.spim.segmentation | Fiji |
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InteractiveMeshDecimation | | Class | ij3d.gui | Fiji |
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InteractiveProjections | | Class | spim.fiji.plugin.removedetections | Fiji |
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InteractiveTracerCanvas | | Class | tracing | Fiji |
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InteractiveTransformDialog | | Class | ij3d.gui | Fiji |
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InteractiveViewPlatformTransformer | This class extends ViewPlatformTransformer, to transform mouse events into real world transformations. | Class | ij3d.behaviors | Fiji |
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Interest_Point_Detection | Plugin to detect interest points, store them on disk, and link them into the XML Different plugins to detect interest points are supported, needs to implement the | Class | spim.fiji.plugin | Fiji |
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Interest_Point_Registration | | Class | spim.fiji.plugin | Fiji |
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InterestPoint | Single interest point, extends mpicbg Point by an idAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
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InterestPointDetection | | Class | spim.fiji.plugin.interestpointdetection | Fiji |
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InterestPointExplorer | | Class | spim.fiji.spimdata.explorer.interestpoint | Fiji |
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InterestPointExplorerPanel | | Class | spim.fiji.spimdata.explorer.interestpoint | Fiji |
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InterestPointList | A list of interest points for a certain label, can save and load from textfile as specified in the XMLAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
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InterestPointOverlay | | Class | spim.fiji.spimdata.explorer.interestpoint | Fiji |
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InterestPointRegistration | | Class | spim.fiji.plugin.interestpointregistration | Fiji |
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InterestPointsExplorerPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
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InterestPointTableModel | | Class | spim.fiji.spimdata.explorer.interestpoint | Fiji |
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InterpolatedImage | | Class | vib | Fiji |
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InterpolatePaintScale | This class implements a PaintScale that generate colors interpolated within a list of given color, using a linear scale. | Class | org.jfree.chart.renderer | Fiji |
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Interpolation | Interpolation methods. | Class | bdv.viewer | Fiji |
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Interpolation | | Class | fiji.plugin.volumeviewer | Fiji |
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Interpolator | | Interface | mpicbg.imglib.interpolation | Fiji |
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Interpolator1D | | Interface | mpicbg.imglib.interpolation | Fiji |
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Interpolator2D | | Interface | mpicbg.imglib.interpolation | Fiji |
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Interpolator3D | | Interface | mpicbg.imglib.interpolation | Fiji |
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InterpolatorFactory | | Class | mpicbg.imglib.interpolation | Fiji |
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InterpolatorImpl | | Class | mpicbg.imglib.interpolation | Fiji |
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Interval | A range on the number line with a min() and max() point. | Class | mpicbg.stitching.fusion | Fiji |
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IntervalAndTransform | | Class | bdv.viewer.overlay | Fiji |
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IntervalBoundingBox | | Class | bdv.util | Fiji |
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IntField | TextField that takes only integers, and sends an ActionEvent when the integer Value has changed either by hitting return or by | Class | | Fiji |
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IntHashMap | A hashmap that uses primitive ints for the key rather than objects to avoid costly usage of Integer wrappers. | Class | org.siox.util | Fiji |
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IntImagePlus | ImagePlusContainer for integer-stored data. | Class | mpicbg.imglib.container.imageplus | Fiji |
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IntSlider | | Class | | Fiji |
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IntType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
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InverseFFT | | Class | script.imglib.algorithm | Fiji |
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InverseFourierConvolution | Convolve an image with the inverse of a kernel which is division in the Fourier domain. | Class | mpicbg.imglib.algorithm.fft | Fiji |
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InverseFourierTransform | | Class | mpicbg.imglib.algorithm.fft | Fiji |
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InverseTransformDescription | | Class | mpicbg.imglib.image.display.imagej | Fiji |
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Invert | | Class | imglib.ops.operator.unary | Fiji |
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Invert | | Class | ini.trakem2.imaging.filters | Fiji |
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InvertibleCoordinateTransform | InvertibleCoordinateTransform with String import and export as used in | Interface | mpicbg.trakem2.transform | Fiji |
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InvertibleCoordinateTransform | | Interface | stitching.model | Fiji |
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InvertibleCoordinateTransformList | | Class | mpicbg.trakem2.transform | Fiji |
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InvertibleModel | | Class | stitching.model | Fiji |
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InvokeLater | This class helps with invoking tasks much, much later. | Class | fiji.gui | Fiji |
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IODialog | Class to create the Input/Output dialog to deal with the files to keep the information of bUnwarpJ. | Class | bunwarpj | Fiji |
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IOFunctions | | Class | mpicbg.spim.io | Fiji |
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IOUtils | A collection of static utilities for the input/output of xml files. | Class | fiji.plugin.trackmate.io | Fiji |
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IPLab_Reader | This plugin opens images in the IPLab/Windows (. | Class | io | Fiji |
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ISBIChallengeExporter | | Class | fiji.plugin.trackmate.action | Fiji |
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IsoData_Classifier | | Class | | Fiji |
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IsolatedPixelWeightener | | Class | mpicbg.spim.fusion | Fiji |
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IsolatedPixelWeightenerFactory | | Interface | mpicbg.spim.fusion | Fiji |
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Items | A helper class for code generation. | Class | com.sun.tools.javac.jvm | Fiji |
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Iterable | The Iterable interface provides basic functionality for iterating over an Image. | Interface | mpicbg.imglib.cursor | Fiji |
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IterationStatus | | Interface | imglib.ops.observer | Fiji |
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IterativeClosestPoint | Iterative closest point implementationAuthor:Stephan Preibisch (stephan. | Class | spim.process.interestpointregistration.icp | Fiji |
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IterativeClosestPointPairwise | | Class | spim.process.interestpointregistration.icp | Fiji |
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IterativeClosestPointParameters | | Class | spim.process.interestpointregistration.icp | Fiji |
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Jacobi | This class implements the jacobi function as a Java class. | Class | bijnum | Fiji |
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JacobiDouble | | Class | math3d | Fiji |
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JacobiFloat | | Class | math3d | Fiji |
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JaqamanLinker | Links two lists of objects based on the LAP framework described in Jaqaman et al. | Class | fiji.plugin.trackmate.tracking.sparselap.linker | Fiji |
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JaqamanLinkingCostMatrixCreator | A CostMatrixCreator that can generate a cost matrix from a list of sources, a list of targets and a CostFunction that can generate a | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
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JaqamanSegmentCostMatrixCreator | This class generates the top-left quadrant of the LAP segment linking cost matrix, following Jaqaman et al. | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
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Java3d | | Class | mpicbg.spim.mpicbg | Fiji |
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JavacElements | Utility methods for operating on program elements. | Class | com.sun.tools.javac.model | Fiji |
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JavacFileManager | This class provides access to the source, class and other files used by the compiler and related tools. | Class | com.sun.tools.javac.file | Fiji |
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JavacFiler | The FilerImplementation class must maintain a number of constraints. | Class | com.sun.tools.javac.processing | Fiji |
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JavacMessager | An implementation of the Messager built on top of log. | Class | com.sun.tools.javac.processing | Fiji |
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JavaCompiler | This class could be the main entry point for GJC when GJC is used as a component in a larger software system. | Class | com.sun.tools.javac.main | Fiji |
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JavaCompiler | | Interface | javax.tools | Fiji |
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JavacOption | TODO: describe com. | Interface | com.sun.tools.javac.main | Fiji |
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JavacProcessingEnvironment | Objects of this class hold and manage the state needed to support annotation processing. | Class | com.sun.tools.javac.processing | Fiji |
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JavacRoundEnvironment | Object providing state about a prior round of annotation processing. | Class | com.sun.tools.javac.processing | Fiji |
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JavacScope | Provides an implementation of Scope. | Class | com.sun.tools.javac.api | Fiji |
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JavacTask | Provides access to functionality specific to the JDK Java Compiler, javac. | Class | com.sun.source.util | Fiji |
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JavacTaskImpl | Provides access to functionality specific to the JDK Java Compiler, javac. | Class | com.sun.tools.javac.api | Fiji |
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JavacTool | TODO: describe com. | Class | com.sun.tools.javac.api | Fiji |
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JavacTrees | Provides an implementation of Trees. | Class | com.sun.tools.javac.api | Fiji |
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JavacTypes | Utility methods for operating on types. | Class | com.sun.tools.javac.model | Fiji |
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JavaFileManager | | Interface | javax.tools | Fiji |
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JavaFileObject | | Interface | javax.tools | Fiji |
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JavassistHelper | | Class | fiji | Fiji |
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JCDiagnostic | An abstraction of a diagnostic message generated by the compiler. | Class | com.sun.tools.javac.util | Fiji |
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JCTree | Root class for abstract syntax tree nodes. | Class | com.sun.tools.javac.tree | Fiji |
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JFileChooserDecorator | | Class | fiji.gui | Fiji |
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JFrameCommandFinder | | Class | fiji.util.gui | Fiji |
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JGraphXAdapter | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
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JImagePanel | This is a Canvas used to display images in a Window. | Class | fiji.util.gui | Fiji |
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JLabelLogger | | Class | fiji.plugin.trackmate.util | Fiji |
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JNI | | Class | fiji | Fiji |
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JNumericTextField | | Class | fiji.plugin.trackmate.gui.panels.components | Fiji |
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JonkerVolgenantAlgorithm | Based on: Jonker, R. | Class | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
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JPanelColorByFeatureGUI | | Class | fiji.plugin.trackmate.gui.panels.components | Fiji |
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JPanelFeaturePenalty | | Class | fiji.plugin.trackmate.gui.panels.components | Fiji |
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JPanelFeatureSelectionGui | | Class | fiji.plugin.trackmate.gui.panels.components | Fiji |
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JPanelTrackerSettingsMain | | Class | fiji.plugin.trackmate.gui.panels.tracker | Fiji |
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JRenderer3D | The framework JRenderer3D provides the possibility to implement easily a 3D display for ImageJ plugins. | Class | jRenderer3D | Fiji |
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JRuler | Ruler component for ScrollDisplay. | Class | org.siox.example | Fiji |
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JSchUtility | | Class | edu.utexas.clm.archipelago.network.shell.ssh | Fiji |
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Just_Certain_Labels | | Class | util | Fiji |
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Kalman_Filter | | Class | | Fiji |
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KalmanTracker | | Class | fiji.plugin.trackmate.tracking.kalman | Fiji |
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KalmanTrackerConfigPanel | | Class | fiji.plugin.trackmate.gui.panels.tracker | Fiji |
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KalmanTrackerFactory | | Class | fiji.plugin.trackmate.tracking.kalman | Fiji |
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KD_Cartoon | | Class | | Fiji |
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KDTree | | Class | fiji.util | Fiji |
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KDTree | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
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KendallTauRankCorrelation | This algorithm calculates Kendall's Tau-b rank correlation coefficient http://en. | Class | algorithms | Fiji |
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Kernel | This class is the generic type for all 1D, 2D and 3D kernels. | Class | volume | Fiji |
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Kernel1D | This class is the generic type for all 1D kernels. | Class | volume | Fiji |
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Kernel2D | This class is the generic type for all 2D kernels. | Class | volume | Fiji |
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Kernel3D | This class is the generic type for all 3D kernels. | Class | volume | Fiji |
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Kernel4D | This class is the generic type for all 4D kernels. | Class | volume | Fiji |
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KeyProperties | | Class | bdv.util | Fiji |
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Keywords | Map from Name to Token and Token to String. | Class | com.sun.tools.javac.parser | Fiji |
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Kinds | Internal symbol kinds, which distinguish between elements of different subclasses of Symbol. | Class | com.sun.tools.javac.code | Fiji |
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Kinematics | | Class | utils | Fiji |
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KLT | | Class | | Fiji |
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Koala_Bin_Reader | | Class | io | Fiji |
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Kuwahara_Filter | | Class | | Fiji |
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Kuwahara_LinearStructure_Filter_v3 | A version of the Kuwahara filter that uses linear kernels rather than square ones. | Class | | Fiji |
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KymographMouseListener | | Class | sc.fiji.timelapse | Fiji |
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Label | | Class | vib.app.module | Fiji |
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LabelBinaryOps | If an underscore is added to this class name this will run as a plugin that operates the close operation. | Class | oldsegmenters | Fiji |
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LabelBrush_ | | Class | oldsegmenters | Fiji |
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LabelCenterTransformation | | Class | vib.app.module | Fiji |
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LabelDiffusionTransformation | | Class | vib.app.module | Fiji |
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LabeledStatementTree | A tree node for a labeled statement. | Interface | com.sun.source.tree | Fiji |
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Labeling | A labeling represents the assignment of zero or more labels to theAuthor:Lee Kamentsky | Class | mpicbg.imglib.labeling | Fiji |
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LabelingCursorStrategy | | Interface | mpicbg.imglib.labeling | Fiji |
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LabelingCursorStrategyFactory | | Interface | mpicbg.imglib.labeling | Fiji |
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LabelingType | The LabelingType represents a labeling of a pixel with zero or more labelings of type T. | Class | mpicbg.imglib.labeling | Fiji |
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LabelInterpolator_ | Generates label data for unlabelled slices based on the data in the nearest slices First unlabelled slices are differentiated from labelled ones via | Class | oldsegmenters | Fiji |
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LabelPopUp | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
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LabelThresholder_ | | Class | oldsegmenters | Fiji |
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LanczosInterpolator | | Class | mpicbg.imglib.interpolation.lanczos | Fiji |
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LanczosInterpolatorFactory | | Class | mpicbg.imglib.interpolation.lanczos | Fiji |
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LAPJV | tailored for sparse cost matrices. | Class | fiji.plugin.trackmate.tracking.sparselap.linker | Fiji |
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Laplace_ | | Class | process3d | Fiji |
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LaPlaceFunctions | | Class | mpicbg.spim.registration.bead.laplace | Fiji |
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Laplacian | Computes the Laplacian of images. | Class | imagescience.feature | Fiji |
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LAPTracker | This class tracks objects by formulating the problem as a Linear Assignment For reference, see: Jaqaman, K. | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji |
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LAPTrackerCostMatrixCreator | Contains the mutually shared fields and private functions used by the two cost matrix classes LinkingCostMatrixCreator and TrackSegmentCostMatrixCreator | Class | fiji.plugin.trackmate.tracking.oldlap.costmatrix | Fiji |
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LAPTrackerFactory | | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji |
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LAPTrackerSettingsPanel | | Class | fiji.plugin.trackmate.gui.panels.tracker | Fiji |
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LAPUtils | | Class | fiji.plugin.trackmate.tracking | Fiji |
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Laser | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
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Lasso | | Class | plugin | Fiji |
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Lasso_ | | Class | plugin | Fiji |
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Layer | | Class | ini.trakem2.display | Fiji |
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LayerBottle | | Class | edu.utexas.clm.archipelago.ijsupport.bottle | Fiji |
|
LayerBottler | | Class | edu.utexas.clm.archipelago.ijsupport.bottle | Fiji |
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LayerPanel | | Class | ini.trakem2.display | Fiji |
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LayerSet | A LayerSet is a container for a list of Layer. | Class | ini.trakem2.display | Fiji |
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LayerStack | This class represents an entire LayerSet of Patch objects only, as it is presented read-only to ImageJ. | Class | ini.trakem2.imaging | Fiji |
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LayerThing | | Class | ini.trakem2.tree | Fiji |
|
LayerTree | | Class | ini.trakem2.tree | Fiji |
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LayoutCharacters | An interface containing layout character constants used in Java This is NOT part of any supported API. | Interface | com.sun.tools.javac.util | Fiji |
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LazyVirtualStack | | Class | ini.trakem2.imaging | Fiji |
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Leaf | | Interface | fiji.util.node | Fiji |
|
Leaf | | Interface | mpicbg.imglib.algorithm.kdtree.node | Fiji |
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LegacyAppConfiguration | Old interface for configuring the legacy application appearance. | Interface | imagej.legacy.plugin | Fiji |
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LegacyBasicImgLoader | | Interface | mpicbg.spim.data.legacy | Fiji |
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LegacyBasicImgLoaderWrapper | | Class | mpicbg.spim.data.legacy | Fiji |
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LegacyDHMImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
LegacyEditor | Old interface for the editor to use instead of ImageJ 1. | Interface | imagej.legacy.plugin | Fiji |
|
LegacyImgLoader | | Interface | mpicbg.spim.data.legacy | Fiji |
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LegacyImgLoaderWrapper | | Class | mpicbg.spim.data.legacy | Fiji |
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LegacyLightSheetZ1ImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
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LegacyMicroManagerImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
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LegacyStackImageLoader | This ImgLoader loads images that represent a 3D stack in a single file, for example in tif, lsm, or czi format. | Class | bdv.ij.export.imgloader | Fiji |
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LegacyStackImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
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LegacyStackImgLoaderIJ | | Class | spim.fiji.spimdata.imgloaders | Fiji |
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LegacyStackImgLoaderLOCI | | Class | spim.fiji.spimdata.imgloaders | Fiji |
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LegacyTileImgLoader | | Class | bdv.ij.export.tiles | Fiji |
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LegacyViewerImgLoader | | Interface | bdv.spimdata.legacy | Fiji |
|
LegacyViewerImgLoaderExtWrapper | | Class | bdv.spimdata.legacy | Fiji |
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LegacyViewerImgLoaderWrapper | | Class | bdv.spimdata.legacy | Fiji |
|
Leica_SP_Reader | Opens multi-image 8-bits tiff files created by Leica confocal microscope systems using each channels own LUT. | Class | leica | Fiji |
|
Leica_SP_Writer | | Class | leica | Fiji |
|
LeicaSPReader | Opens multi-image 8-bits tiff files created by Leica confocal microscope systems using each channels own LUT. | Class | leica | Fiji |
|
LevelSet | | Class | levelsets.ij | Fiji |
|
LevelSetFactory | This class encapsulates all known implementations for Level Sets and their parameters. | Class | levelsets.algorithm | Fiji |
|
LevelSetImplementation | Stub class for all Level set variants. | Class | levelsets.algorithm | Fiji |
|
LevenbergMarquardtSolver | A collection of static utils implementing a plain Levenberg-Marquardt least-square curve fitting algorithm. | Class | mpicbg.imglib.algorithm.peak | Fiji |
|
Levenshtein | | Class | fiji.util | Fiji |
|
Lexer | The lexical analyzer maps an input stream consisting of ASCII characters and Unicode escapes into a token sequence. | Interface | com.sun.tools.javac.parser | Fiji |
|
LibraryChecker | Utility methods for verifying that classes are present and versions are correct. | Class | loci.plugins.util | Fiji |
|
LibraryEntry | A list entry for the configuration window's Libraries tab. | Class | loci.plugins.config | Fiji |
|
LightSheetZ1 | | Class | spim.fiji.datasetmanager | Fiji |
|
LightSheetZ1ImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
LightSheetZ1MetaData | | Class | spim.fiji.datasetmanager | Fiji |
|
LiHistogram2D | Represents the creation of a 2D histogram between two images. | Class | algorithms | Fiji |
|
LiICQ | This algorithm calculates Li et al. | Class | algorithms | Fiji |
|
Limits | | Class | util | Fiji |
|
Line | | Class | math3d | Fiji |
|
Line3D | By definition, only ZDisplayable objects may implement Line3D. | Interface | ini.trakem2.display | Fiji |
|
Line3D | This class represents a line in 3D coordinate system. | Class | jRenderer3D | Fiji |
|
LineageClassifier | Lineage classifier class 2009 Ignacio Arganda-Carreras and Sergio Jimenez-Celorrio | Class | lineage | Fiji |
|
Linear_Gradient | | Class | fiji.drawing | Fiji |
|
LinearDistance | | Class | mpicbg.pointdescriptor.similarity | Fiji |
|
LinearIntensityMap | Transfer intensities by a linear function y=ax+b with the coefficients a and b being stored as a | Class | org.janelia.intensity | Fiji |
|
LinearInterpolator | | Class | mpicbg.imglib.interpolation.linear | Fiji |
|
LinearInterpolator1D | | Class | mpicbg.imglib.interpolation.linear | Fiji |
|
LinearInterpolator2D | | Class | mpicbg.imglib.interpolation.linear | Fiji |
|
LinearInterpolator2DRealType | | Class | mpicbg.imglib.interpolation.linear | Fiji |
|
LinearInterpolator3D | | Class | mpicbg.imglib.interpolation.linear | Fiji |
|
LinearInterpolator3DRealType | | Class | mpicbg.imglib.interpolation.linear | Fiji |
|
LinearInterpolatorFactory | | Class | mpicbg.imglib.interpolation.linear | Fiji |
|
LinearRegression | | Class | sc.fiji.timelapse | Fiji |
|
LineFunction | converts a multivariate function into a univariate functionAuthor:Korbinian Strimmer | Class | pal.math | Fiji |
|
LineMap | Provides methods to convert between character positions and line numbers for a compilation unit. | Interface | com.sun.source.tree | Fiji |
|
LineReader | Reads text line-by-line from a character stream using buffering for efficiency. | Class | imagescience.utility | Fiji |
|
LinkedPoint | | Class | mpicbg.pointdescriptor | Fiji |
|
LinkingCostFunction | Linking cost function used with LAPTracker. | Class | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
|
LinkingCostMatrixCreator | Creates the cost matrix described in Figure 1b in the paper. | Class | fiji.plugin.trackmate.tracking.oldlap.costmatrix | Fiji |
|
LinkNew3DViewerAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
Lint | A class for handling -Xlint suboptions and @SuppresssWarnings. | Class | com.sun.tools.javac.code | Fiji |
|
List | A class for generic linked lists. | Class | com.sun.tools.javac.util | Fiji |
|
ListBoxImage | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
ListBuffer | A class for constructing lists by appending elements. | Class | com.sun.tools.javac.util | Fiji |
|
ListChooserPanel | A panel to let the user choose what displayer he wants to use. | Class | fiji.plugin.trackmate.gui.panels | Fiji |
|
ListImgCellsLoad | | Class | mpicbg.imglib.wrapper | Fiji |
|
ListListener | | Class | selection | Fiji |
|
LiteralTree | A tree node for a literal expression. | Interface | com.sun.source.tree | Fiji |
|
LittleEndianInputStream | Reads little-endian data from a source InputStream by reversing byte ordering. | Class | net.sf.image4j.io | Fiji |
|
LittleEndianOutputStream | Writes little-endian data to a target OutputStream by reversing byte ordering. | Class | net.sf.image4j.io | Fiji |
|
LittleEndianRandomAccessFile | Provides endian conversions for input and output with a RandomAccessFile. | Class | net.sf.image4j.io | Fiji |
|
Load_Auto_Traces | | Class | tracing | Fiji |
|
Load_particles_tableFromImg | | Class | QuickPALM | Fiji |
|
Load_Segmentation | | Class | siox | Fiji |
|
LoadCell | | Class | mpicbg.imglib.wrapper | Fiji |
|
LoadDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
Loader | Handle all data-related issues with a virtualization engine, including load/unload and saving, saving as and overwriting. | Class | ini.trakem2.persistence | Fiji |
|
LoadICYTrackPlugIn_ | | Class | fiji.plugin.trackmate | Fiji |
|
LoadingStrategy | enum LoadingStrategyDescribes how the cache processes requests for cells with missing data. | Class | bdv.img.cache | Fiji |
|
LoadListener | | Class | selection | Fiji |
|
LoadParseQueryXML | | Class | spim.fiji.plugin.queryXML | Fiji |
|
LoadTrackMatePlugIn_ | | Class | fiji.plugin.trackmate | Fiji |
|
Local_Thickness_Driver | | Class | sc.fiji.localThickness | Fiji |
|
Local_Thickness_Parallel | | Class | sc.fiji.localThickness | Fiji |
|
Local_Threshold | | Class | vib | Fiji |
|
LocalCoordinateSystemPointDescriptor | | Class | mpicbg.pointdescriptor | Fiji |
|
LocalHistogram | | Class | mmorpho | Fiji |
|
Localizable | The Localizable interface add functionality to return the current position. | Interface | mpicbg.imglib.cursor | Fiji |
|
Localizable3D | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizableByDim | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizableByDim3D | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizableByDimCursor | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizableByDimCursor3D | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizableCursor | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizableCursor3D | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizableLabelingCursor | A cursor that only visits labeled pixels. | Class | mpicbg.imglib.labeling | Fiji |
|
LocalizableLabelingPerimeterCursor | | Class | mpicbg.imglib.labeling | Fiji |
|
LocalizablePlane | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizablePlaneCursor | | Interface | mpicbg.imglib.cursor | Fiji |
|
LocalizablePoint | | Class | mpicbg.imglib.algorithm.math | Fiji |
|
Localization | | Class | spim.process.interestpointdetection | Fiji |
|
LocalNeighborhoodCursor | | Class | mpicbg.imglib.cursor.special | Fiji |
|
LocalNeighborhoodCursor3D | | Class | mpicbg.imglib.cursor.special | Fiji |
|
LocalNeighborhoodCursor3DOptimized | | Class | mpicbg.imglib.cursor.special | Fiji |
|
LocalNeighborhoodCursorFactory | | Class | mpicbg.imglib.cursor.special | Fiji |
|
LocalRigidRegistration_ | | Class | vib | Fiji |
|
LocalThicknessWrapper | A class which can be used to programmatically run and control the various steps in local thickness map calculations. | Class | sc.fiji.localThickness | Fiji |
|
LocationDialog | Bio-Formats Importer location chooser dialog box. | Class | loci.plugins.in | Fiji |
|
LOCI | | Class | mpicbg.imglib.io | Fiji |
|
LociConfig | An ImageJ plugin for displaying the Bio-Formats plugins configuration dialog. | Class | loci.plugins.config | Fiji |
|
LociExporter | ImageJ plugin for writing files using the OME Bio-Formats package. | Class | loci.plugins | Fiji |
|
LociFunctions | This class provides macro extensions in ImageJ for Bio-Formats. | Class | loci.plugins.macro | Fiji |
|
LociImporter | ImageJ plugin for reading files using the OME Bio-Formats package. | Class | loci.plugins | Fiji |
|
LociInstaller | An ImageJ plugin for installing and upgrading libraries related to the Bio-Formats plugins. | Class | loci.plugins.config | Fiji |
|
LociPrefs | Utility methods for ImageJ preferences for Bio-Formats plugins. | Class | loci.plugins.util | Fiji |
|
Lock | For thread synchronization. | Class | ini.trakem2.utils | Fiji |
|
Log | A class for error logs. | Class | com.sun.tools.javac.util | Fiji |
|
Log | | Class | imglib.ops.operator.unary | Fiji |
|
Log | | Class | script.imglib.math | Fiji |
|
Log | Utility class to deal with logging. | Class | stitching.utils | Fiji |
|
LoG | This is a 2D Laplacian of Gaussian convolution kernel. | Class | volume | Fiji |
|
Log10 | | Class | script.imglib.math | Fiji |
|
Log1p | | Class | script.imglib.math | Fiji |
|
LogDetector | | Class | fiji.plugin.trackmate.detection | Fiji |
|
LogDetectorConfigurationPanel | Configuration panel for spot detectors based on LoG detector. | Class | fiji.plugin.trackmate.gui.panels.detector | Fiji |
|
LogDetectorFactory | | Class | fiji.plugin.trackmate.detection | Fiji |
|
LogFuncs | | Class | inference | Fiji |
|
Logger | This class is used to log messages occurring during TrackMate execution. | Class | fiji.plugin.trackmate | Fiji |
|
LoggingInputStream | A class to monitor an input stream for speed and total byte download. | Class | ini.trakem2.io | Fiji |
|
LogHistogramDataset | A HistogramDataset that returns the log of the count in each bin (plus one), so as to have a logarithmic plot. | Class | org.jfree.data.statistics | Fiji |
|
LogPane | | Class | edfgui | Fiji |
|
LogPanel | A panel using s JTextPane to log events. | Class | fiji.plugin.trackmate.gui | Fiji |
|
LogPanelDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
LogSingleton | | Class | edf | Fiji |
|
LOI_Interpolator | | Class | sc.fiji.timelapse | Fiji |
|
LOI_Interpolator_Tool | | Class | sc.fiji.timelapse | Fiji |
|
LongAccess | | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
|
LongArray | A dynamic array of long values. | Class | imagescience.array | Fiji |
|
LongArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
LongDynamicContainer | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
LongDynamicContainerAccessor | | Class | mpicbg.imglib.container.dynamic | Fiji |
|
LongType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
LookupTable | | Class | fiji.plugin.volumeviewer | Fiji |
|
Lower | This pass translates away some syntactic sugar: inner classes, class literals, assertions, foreach loops, etc. | Class | com.sun.tools.javac.comp | Fiji |
|
LRFFT | | Class | mpicbg.spim.postprocessing.deconvolution2 | Fiji |
|
LRFFTThreads | | Class | mpicbg.spim.postprocessing.deconvolution2 | Fiji |
|
LRInput | | Class | mpicbg.spim.postprocessing.deconvolution2 | Fiji |
|
LSM_Reader | | Class | | Fiji |
|
LSM_Toolbox | | Class | | Fiji |
|
LSMFileInfo | | Class | org.imagearchive.lsm.reader.info | Fiji |
|
LsmImageTableModel | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
LSS16_Reader | | Class | io | Fiji |
|
LSS16_Writer | | Class | io | Fiji |
|
LucyRichardsonFFT | | Class | mpicbg.spim.postprocessing.deconvolution | Fiji |
|
LucyRichardsonMultiViewDeconvolution | | Class | mpicbg.spim.postprocessing.deconvolution | Fiji |
|
Luminance | | Class | script.imglib.color | Fiji |
|
LuraWave | Utility methods for dealing with proprietary LuraWave licensing. | Class | loci.plugins.util | Fiji |
|
LUTBlue | | Class | ini.trakem2.imaging.filters | Fiji |
|
LUTCustom | | Class | ini.trakem2.imaging.filters | Fiji |
|
LUTCyan | | Class | ini.trakem2.imaging.filters | Fiji |
|
LUTDialog | | Class | ij3d.gui | Fiji |
|
LUTGreen | | Class | ini.trakem2.imaging.filters | Fiji |
|
LUTInfo | | Class | org.imagearchive.lsm.toolbox.info | Fiji |
|
LUTMagenta | | Class | ini.trakem2.imaging.filters | Fiji |
|
LUTOrange | | Class | ini.trakem2.imaging.filters | Fiji |
|
LUTRed | | Class | ini.trakem2.imaging.filters | Fiji |
|
LUTYellow | | Class | ini.trakem2.imaging.filters | Fiji |
|
M | TrakEM2's mathematician. | Class | ini.trakem2.utils | Fiji |
|
MachineAccuracy | determines machine accuracyAuthor:Korbinian Strimmer, Alexei Drummond | Class | pal.math | Fiji |
|
MacroFunctions | Convenience class that simplifies implemention of ImageJ macro extensions. | Class | loci.plugins.macro | Fiji |
|
Main | The programmatic interface for the Java Programming Language Except for the two methods | Class | com.sun.tools.javac | Fiji |
|
Main | This class provides a commandline interface to the GJC compiler. | Class | com.sun.tools.javac.main | Fiji |
|
Main | Main entry point into Fiji. | Class | fiji | Fiji |
|
Main | Access the command-line interface of the ImageJ UpdaterAuthor:Johannes Schindelin | Class | fiji.updater | Fiji |
|
Main | Simple class with main method for testing Image5D behavior. | Class | | Fiji |
|
Main | | Class | net.imagej | Fiji |
|
Main | Class to start the SIOX demo as GUI application or as Applet. | Class | org.siox.example | Fiji |
|
MainClassForDebugging | | Class | fiji | Fiji |
|
MainDialog | Class to create the dialog for bUnwarpJ. | Class | bunwarpj | Fiji |
|
MainDialog | Bio-Formats Importer general options dialog box. | Class | loci.plugins.in | Fiji |
|
Make_Montage | Does Montages of Image5Ds with help of ij. | Class | | Fiji |
|
Make_Transition | | Class | video2 | Fiji |
|
MandatoryWarningHandler | A handler to process mandatory warnings, setting up a deferred diagnostic to be printed at the end of the compilation if some warnings get suppressed | Class | com.sun.tools.javac.util | Fiji |
|
MandersColocalization | This algorithm calculates Manders et al. | Class | algorithms | Fiji |
|
ManhattanDistance | | Class | mpicbg.pointdescriptor.similarity | Fiji |
|
Manual_Landmark_Selection | | Class | plugin | Fiji |
|
Manual_Tracking | | Class | | Fiji |
|
ManualAlignMode | | Class | ini.trakem2.display | Fiji |
|
ManualDetectorFactory | | Class | fiji.plugin.trackmate.detection | Fiji |
|
ManualEdgeColorAnalyzer | | Class | fiji.plugin.trackmate.features.manual | Fiji |
|
ManualEdgeColorGenerator | | Class | fiji.plugin.trackmate.visualization | Fiji |
|
ManualSourceTransforms | | Class | bdv.tools.transformation | Fiji |
|
ManualSpotColorAnalyzerFactory | | Class | fiji.plugin.trackmate.features.manual | Fiji |
|
ManualSpotColorGenerator | | Class | fiji.plugin.trackmate.visualization | Fiji |
|
ManualTrackerFactory | | Class | fiji.plugin.trackmate.tracking | Fiji |
|
ManualTrackingGUIController | | Class | fiji.plugin.trackmate.gui | Fiji |
|
ManualTrackingPlugIn_ | | Class | fiji.plugin.trackmate | Fiji |
|
ManualTransformation | | Class | bdv.tools.transformation | Fiji |
|
ManualTransformationEditor | | Class | bdv.tools.transformation | Fiji |
|
MAPInference | | Class | inference | Fiji |
|
MappingFusionParalell | | Class | mpicbg.spim.fusion | Fiji |
|
MappingFusionParalellMaxWeight | | Class | mpicbg.spim.fusion | Fiji |
|
MappingFusionSequential | | Class | mpicbg.spim.fusion | Fiji |
|
MappingFusionSequentialDifferentOutput | | Class | mpicbg.spim.fusion | Fiji |
|
Marker | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
|
MarkerLists | | Class | view5d | Fiji |
|
Mask | This class is responsible for the mask preprocessing that takes place concurrently with user-interface events. | Class | bunwarpj | Fiji |
|
Mask | | Class | voltex | Fiji |
|
Mask_Of_Nearby_Points | | Class | util | Fiji |
|
MaskFactory | | Class | gadgets | Fiji |
|
MaskPredicate | | Class | net.imglib2.predicate | Fiji |
|
MaskThicknessMapWithOriginal | An additional image processing step to LocalThickness, which removes pixels from the thickness map, which are background in the original image. | Class | sc.fiji.localThickness | Fiji |
|
MasterModel | | Class | org.imagearchive.lsm.toolbox | Fiji |
|
Match | | Class | selection | Fiji |
|
Matcher | | Interface | mpicbg.pointdescriptor.matcher | Fiji |
|
Matching | | Class | process | Fiji |
|
MatchIntensities | | Class | org.janelia.intensity | Fiji |
|
MatchPointList | The interestpoint list from a certain channel;Author:Stephan Preibisch (stephan. | Class | spim.process.interestpointregistration | Fiji |
|
MaterialList | | Class | vib.segment | Fiji |
|
MathLib | | Class | mpicbg.imglib.algorithm.math | Fiji |
|
MathTools | This class has the math methods to deal with b-splines and images. | Class | bunwarpj | Fiji |
|
MathUtils | Handy utility functions which have some Mathematical relavance. | Class | pal.math | Fiji |
|
Max | | Class | imglib.ops.operator.binary | Fiji |
|
Max | | Class | imglib.ops.operator.unary | Fiji |
|
Max | | Class | script.imglib.math | Fiji |
|
Max_Project | | Class | spim.fiji.plugin | Fiji |
|
MaxEntHistogram | | Class | vib | Fiji |
|
MaxEntQuantization_ | | Class | vib | Fiji |
|
Maximum_ | | Class | process3d | Fiji |
|
MaximumProjector | | Class | spimopener | Fiji |
|
MaxPixelFusion | | Class | mpicbg.stitching.fusion | Fiji |
|
MaxPixelFusionIgnoreZero | | Class | mpicbg.stitching.fusion | Fiji |
|
MaxProjection | Computes a maximum projection along an arbitrary dimension, if the image in 1-dimensional it will return an Image of size 1 with the max valueAuthor:Stephan Preibisch (stephan. | Class | mpicbg.imglib.algorithm.projection | Fiji |
|
MaxProjectPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
|
MC_Test | | Class | | Fiji |
|
MCCube | | Class | ini.trakem2.utils | Fiji |
|
MCCube | | Class | marchingcubes | Fiji |
|
MCTriangulator | | Class | ini.trakem2.utils | Fiji |
|
MCTriangulator | | Class | marchingcubes | Fiji |
|
Median_ | | Class | process3d | Fiji |
|
MedianFilter | Performs a median filtering on the input image. | Class | levelsets.filter | Fiji |
|
MedianFilter | Median filter / morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
|
MedianFilter | | Class | script.imglib.algorithm | Fiji |
|
MedianFilter2D | A simple median filter that operates on 1D, 2D or 3D images. | Class | fiji.plugin.trackmate.detection.util | Fiji |
|
MedianPixelFusion | | Class | mpicbg.stitching.fusion | Fiji |
|
MedianPixelFusionIgnoreZero | | Class | mpicbg.stitching.fusion | Fiji |
|
MediaWikiClient | | Class | fiji | Fiji |
|
MemberEnter | This is the second phase of Enter, in which classes are completed by entering their members into the class scope using | Class | com.sun.tools.javac.comp | Fiji |
|
MemberSelectTree | A tree node for a member access expression. | Interface | com.sun.source.tree | Fiji |
|
Memory | This plugin implements the Edit/Options/Memory & Threads. | Class | fiji | Fiji |
|
MemoryDialog | Bio-Formats Importer memory usage confirmation dialog box. | Class | loci.plugins.in | Fiji |
|
MemoryProfiler | | Class | fiji | Fiji |
|
Menu_Font | | Class | | Fiji |
|
MenuItemDiverter | A temporary diverter for all the menu items Use this class to intercept the next click on a menu item. | Class | fiji.util | Fiji |
|
MenuItemHelper | | Class | fiji.util | Fiji |
|
MenuRefresher | | Class | fiji | Fiji |
|
Merge_Cluster_Jobs | | Class | spim.fiji.plugin | Fiji |
|
MergeClusterJobs | | Class | spim.fiji.plugin.cluster | Fiji |
|
MergeExample | | Class | bdv.spimdata.tools | Fiji |
|
MergeFileAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
MergePartitionList | | Class | bdv.spimdata.tools | Fiji |
|
Merger | | Class | ini.trakem2.utils | Fiji |
|
MergeTools | | Class | bdv.spimdata.tools | Fiji |
|
MergingCostFunction | Merging cost function used with LAPTracker. | Class | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
|
MersenneTwisterFast | MersenneTwisterFast: A simulation quality fast random number generator (MT19937) | Class | pal.math | Fiji |
|
Mesh_Maker | | Class | customnode | Fiji |
|
Mesh_Maker | | Class | ij3d | Fiji |
|
MeshEditor | | Class | isosurface | Fiji |
|
Meshes_From_Label_File | | Class | util | Fiji |
|
MeshExporter | | Class | isosurface | Fiji |
|
MeshGroup | | Class | isosurface | Fiji |
|
MeshLoader | | Class | customnode | Fiji |
|
MeshMaker | | Class | customnode | Fiji |
|
MeshMaker | | Class | ij3d | Fiji |
|
MeshProperties | References. | Class | isosurface | Fiji |
|
MessageListener | | Interface | edu.utexas.clm.archipelago.listen | Fiji |
|
MessageOverlayAnimator | Draw lines of text in the lower right corner of the display. | Class | bdv.viewer.animate | Fiji |
|
Messager | A Messager provides the way for an annotation processor to report error messages, warnings, and other notices. | Interface | javax.annotation.processing | Fiji |
|
Messages | Support for localized messages. | Class | com.sun.tools.javac.util | Fiji |
|
MessageType | MessageType enumeration used for ClusterMessages. | Class | edu.utexas.clm.archipelago.listen | Fiji |
|
MessageXC | | Class | edu.utexas.clm.archipelago.network | Fiji |
|
Messenger | Displays various types of messages. | Class | imagescience.utility | Fiji |
|
MetaImage_CWriter | | Class | io | Fiji |
|
MetaImage_Reader | | Class | io | Fiji |
|
MetaImage_Writer | | Class | io | Fiji |
|
MethodInvocationTree | A tree node for a method invocation expression. | Interface | com.sun.source.tree | Fiji |
|
MethodTree | A tree node for a method or annotation type element declaration. | Interface | com.sun.source.tree | Fiji |
|
MFWithGradient | interface for a function of several variables with a gradientAuthor:Korbinian Strimmer | Interface | pal.math | Fiji |
|
MicroManager | | Class | spim.fiji.datasetmanager | Fiji |
|
MicroManagerImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
MicromanagerTranslator | Container class for translators between OME and Micromanager formats. | Class | io.scif.ome.translators | Fiji |
|
MIJ | Matlab to ImageJ interface. | Class | | Fiji |
|
Min | | Class | imglib.ops.operator.binary | Fiji |
|
Min | | Class | imglib.ops.operator.unary | Fiji |
|
Min | | Class | script.imglib.math | Fiji |
|
MinFilterThreshold | | Class | spim.process.fusion.boundingbox.automatic | Fiji |
|
Minimum_ | | Class | process3d | Fiji |
|
MinimumProjector | | Class | spimopener | Fiji |
|
MinMaxAdjustable | Simple interface for objects whose effects depend on a minimal and maximal double value that can be adjusted manually or automatically. | Interface | fiji.plugin.trackmate.visualization | Fiji |
|
MinMaxGroup | An int interval. | Class | bdv.tools.brightness | Fiji |
|
MinMaxMedian | This class implements the minimum, maximum and median filter. | Class | process3d | Fiji |
|
MinPixelFusion | | Class | mpicbg.stitching.fusion | Fiji |
|
MinPixelFusionIgnoreZero | | Class | mpicbg.stitching.fusion | Fiji |
|
MipMapImage | A MipMap is a container for an Image and its corresponding inverse x/y scale relative to an original Image | Class | ini.trakem2.display | Fiji |
|
MipmapInfo | Description of available mipmap levels for a BasicViewSetup. | Class | bdv.img.hdf5 | Fiji |
|
MipmapOrdering | | Interface | bdv.viewer.render | Fiji |
|
MipmapTransforms | | Class | bdv.util | Fiji |
|
Mirror | | Class | imagescience.transform | Fiji |
|
Mirror | Mirrors an n-dimensional image along an axis (one of the dimensions). | Class | spim.process.fusion.deconvolution | Fiji |
|
MirroredTypeException | Thrown when an application attempts to access the Class object corresponding to a TypeMirror. | Class | javax.lang.model.type | Fiji |
|
MirroredTypesException | Thrown when an application attempts to access a sequence of Class objects each corresponding to a TypeMirror. | Class | javax.lang.model.type | Fiji |
|
MirrorImage | Mirrors an n-dimensional image along an axis (one of the dimensions). | Class | mpicbg.imglib.algorithm.mirror | Fiji |
|
MiscTools | Different tools for the bUnwarpJ interface. | Class | bunwarpj | Fiji |
|
MissingPreconditionException | An exception class for missing preconditions for algorithm execution. | Class | algorithms | Fiji |
|
MissingViews | | Class | mpicbg.spim.data.sequence | Fiji |
|
Mode | | Interface | ini.trakem2.display | Fiji |
|
Model | The model for the data managed by TrackMate trackmate. | Class | fiji.plugin.trackmate | Fiji |
|
Model | Abstract class for arbitrary transformation models to be applied to Points in n-dimensional space. | Class | stitching.model | Fiji |
|
ModelBased3d | | Class | mpicbg.spim.registration.detection.descriptor | Fiji |
|
ModelChangeEvent | | Class | fiji.plugin.trackmate | Fiji |
|
ModelChangeListener | An interface for listeners that will be notified when a ModelAuthor:Jean-Yves Tinevez Interface | fiji.plugin.trackmate | Fiji | |
|
ModelessQuestions | | Class | util | Fiji |
|
ModelFeatureUpdater | A utility class that listens to the change occurring in a model, and updates its spot, edge and track features accordingly. | Class | fiji.plugin.trackmate.features | Fiji |
|
ModelInference | | Class | inference | Fiji |
|
ModelLink | | Class | spim.fiji.plugin.apply | Fiji |
|
ModelPointDescriptor | | Class | mpicbg.pointdescriptor | Fiji |
|
ModelPriorMatcher | This class does a simple matching but computes a normalizationFactor based a given model prior. | Class | mpicbg.pointdescriptor.matcher | Fiji |
|
ModelPriorSubsetMatcher | | Class | mpicbg.pointdescriptor.matcher | Fiji |
|
ModelTools | A collection of static utilities made to ease the manipulation of a TrackMate Model and SelectionModel. | Class | fiji.plugin.trackmate.util | Fiji |
|
ModifiableInterval | | Class | bdv.util | Fiji |
|
Modifier | Represents a modifier on a program element such as a class, method, or field. | Class | javax.lang.model.element | Fiji |
|
ModifiersTree | A tree node for the modifiers, including annotations, for a declaration. | Interface | com.sun.source.tree | Fiji |
|
Module | | Class | vib.app.module | Fiji |
|
ModuleListener | | Interface | vib.app.module | Fiji |
|
Montage | | Class | ini.trakem2.utils | Fiji |
|
Morph | Morphological operations such as Open, Close, Erode and Dilate. | Class | script.imglib.algorithm.fn | Fiji |
|
MorphClose | Close morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
|
MorphDilate | Dilation morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
|
MorphErode | Erosion morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
|
MorphologicalOperator | Base class for all morphological operations. | Class | levelsets.filter | Fiji |
|
MorphologicalOperators | | Class | edf | Fiji |
|
MorphOpen | Open morphological operation. | Class | mpicbg.imglib.algorithm.roi | Fiji |
|
MorphoProcessor | | Class | mmorpho | Fiji |
|
MosaicJ_ | | Class | | Fiji |
|
Motion3D | | Class | mpicbg.spim.vis3d | Fiji |
|
MouseCursor | Provides custom-made mouse cursors. | Class | imagescience.utility | Fiji |
|
MouseListenerTimelapse | | Class | fiji.plugin.timelapsedisplay | Fiji |
|
MouseListenerTimelapse | | Class | spim.process.interestpointregistration.registrationstatistics | Fiji |
|
MouseListenerValue | | Class | spim.fiji.plugin.thinout | Fiji |
|
Move_Roi | | Class | video2 | Fiji |
|
Moving_Least_Squares | This plugin implements the algorithms from the paper Image Deformation Using Moving Least Squares, Schaefer S. | Class | | Fiji |
|
MovingLeastSquaresTransform | | Class | mpicbg.trakem2.transform | Fiji |
|
MovingLeastSquaresTransform2 | | Class | mpicbg.trakem2.transform | Fiji |
|
MTJGenial | | Class | | Fiji |
|
MTJMessage | | Class | | Fiji |
|
MTJQuestion | | Class | | Fiji |
|
MTrack2_ | Uses ImageJ's particle analyzer to track the movement of multiple objects through a stack. | Class | | Fiji |
|
MTrackJ_ | | Class | | Fiji |
|
MTrackJ_Website | | Class | | Fiji |
|
Multi_View_Deconvolution | | Class | fiji.plugin | Fiji |
|
Multi_View_Fusion | | Class | fiji.plugin | Fiji |
|
MultiBoxOverlay | Paint an overlay showing multiple transformed boxes (interval + transform). | Class | bdv.viewer.overlay | Fiji |
|
MultiBoxOverlayRenderer | Render multibox overlay corresponding to a ViewerState into aAuthor:Tobias Pietzsch Class | bdv.viewer.overlay | Fiji | |
|
MultiImageIterator | | Class | imglib.ops.operation | Fiji |
|
MultiOrthoGroup | This class extends VoltexGroup. | Class | orthoslice | Fiji |
|
MultiOrthoslice | | Class | orthoslice | Fiji |
|
MultipageTiffReader | Adapted version from the MicroManager codebase that supports the new diSPIM related tags and multiple-file reading. | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
MultipleImageProcessor | | Class | | Fiji |
|
MultipleKymograph_ | Time space plot is created. | Class | | Fiji |
|
MultipleOverlay_ | Plugin for multiple line selction. | Class | | Fiji |
|
Multiply | | Class | imglib.ops.operator.binary | Fiji |
|
Multiply | | Class | script.imglib.math | Fiji |
|
MultiplyARGBComposite | | Class | ini.trakem2.display.graphics | Fiji |
|
MultiplyByConstant | | Class | imglib.ops.operator.unary | Fiji |
|
MultiResolutionImgLoader | An ImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.sequence | Fiji |
|
MultiResolutionRenderer | A Renderer that uses a coarse-to-fine rendering scheme. | Class | bdv.viewer.render | Fiji |
|
MultiResolutionSetupImgLoader | A SetupImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.sequence | Fiji |
|
MultiTaskProgress | | Interface | fiji.features | Fiji |
|
MultiTaskProgress | | Interface | tracing | Fiji |
|
MultiThreaded | | Interface | mpicbg.imglib.algorithm | Fiji |
|
MultiThreadedAlgorithm | This is a convenience implementation of an algorithm that implements MultiThreaded and Algorithm so that less code has to be re-implemented. | Class | mpicbg.imglib.algorithm | Fiji |
|
MultiThreadedBenchmarkAlgorithm | This is a convenience implementation of an algorithm that implements MultiThreaded, Benchmark and Algorithm so that less code has to be re-implemented. | Class | mpicbg.imglib.algorithm | Fiji |
|
MultiThreading | Title: MultiThreading Copyright: Copyright (c) 2007 | Class | mpi.fruitfly.general | Fiji |
|
MultivariateFunction | interface for a function of several variablesAuthor:Korbinian Strimmer | Interface | pal.math | Fiji |
|
MultivariateMinimum | abstract base class for minimisation of a multivariate functionAuthor:Korbinian Strimmer | Class | pal.math | Fiji |
|
MultiViewDatasetDefinition | | Interface | spim.fiji.datasetmanager | Fiji |
|
MunkresKuhnAlgorithm | This implements optimal matching between two sets given a weight matrix (where the goal is to minimize the cumulative weight of the matches). | Class | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
|
MutualInformation | | Class | distance | Fiji |
|
MVDeconFFT | | Class | spim.process.fusion.deconvolution | Fiji |
|
MVDeconFFTThreads | | Class | spim.process.fusion.deconvolution | Fiji |
|
MVDeconInput | | Class | spim.process.fusion.deconvolution | Fiji |
|
MVDeconvolution | | Class | spim.process.fusion.deconvolution | Fiji |
|
mxScaledLabelShape | This is a shape that is made to display a cell in a way that suits for our spots objects. | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
mxSideTextShape | A text shape that draws edge label along the edge line and parallel to it. | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
My3DData | | Class | view5d | Fiji |
|
MyMultiLineLabel | | Class | spim.fiji.plugin.util | Fiji |
|
MySlider | | Class | edfgui | Fiji |
|
MyTableRenderer | | Class | edfgui | Fiji |
|
NaiveResampler | | Class | vib | Fiji |
|
Name | An abstraction for internal compiler strings. | Class | com.sun.tools.javac.util | Fiji |
|
Name | An immutable sequence of characters. | Interface | javax.lang.model.element | Fiji |
|
Name_Points | | Class | landmarks | Fiji |
|
NamedContainer | A small container to name objects by overriding the toString method. | Class | results | Fiji |
|
NamedEntity | An Entity that has a name. | Class | mpicbg.spim.data.generic.base | Fiji |
|
NamedPointSet | | Class | landmarks | Fiji |
|
NamedPointWorld | | Class | landmarks | Fiji |
|
NamePattern | | Class | spim.fiji.spimdata | Fiji |
|
NamePoints | | Class | landmarks | Fiji |
|
NativeLibraryTools | | Class | spim.process.cuda | Fiji |
|
NavigationActions | | Class | bdv.viewer | Fiji |
|
ND2Widgets | Custom widgets for configuring Bio-Formats ND2 support. | Class | loci.plugins.config | Fiji |
|
NearestNeighborFlagSearchOnKDTree | | Class | fiji.plugin.trackmate.tracking.kdtree | Fiji |
|
NearestNeighborInterpolator | | Class | mpicbg.imglib.interpolation.nearestneighbor | Fiji |
|
NearestNeighborInterpolator1D | | Class | mpicbg.imglib.interpolation.nearestneighbor | Fiji |
|
NearestNeighborInterpolator2D | | Class | mpicbg.imglib.interpolation.nearestneighbor | Fiji |
|
NearestNeighborInterpolator3D | | Class | mpicbg.imglib.interpolation.nearestneighbor | Fiji |
|
NearestNeighborInterpolatorFactory | | Class | mpicbg.imglib.interpolation.nearestneighbor | Fiji |
|
NearestNeighborSearch | | Class | fiji.util | Fiji |
|
NearestNeighborSearch | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
|
NearestNeighborTracker | | Class | fiji.plugin.trackmate.tracking.kdtree | Fiji |
|
NearestNeighborTrackerFactory | | Class | fiji.plugin.trackmate.tracking.kdtree | Fiji |
|
NearestNeighborTrackerSettingsPanel | | Class | fiji.plugin.trackmate.gui.panels.tracker | Fiji |
|
NearPoint | | Class | tracing | Fiji |
|
NestingKind | The nesting kind of a type element. | Class | javax.lang.model.element | Fiji |
|
NeuriteTracerResultsDialog | | Class | tracing | Fiji |
|
NeuroML | | Class | ini.trakem2.io | Fiji |
|
New_DB_Project | | Class | ini.trakem2 | Fiji |
|
New_Image5D | Creates and displays a new Image5D. | Class | | Fiji |
|
New_Project | | Class | ini.trakem2 | Fiji |
|
New_Video | | Class | video2 | Fiji |
|
NewAnalyzeTracings_ | | Class | tracing | Fiji |
|
NewArrayTree | A tree node for an expression to create a new instance of an array. | Interface | com.sun.source.tree | Fiji |
|
NewClassTree | A tree node to declare a new instance of a class. | Interface | com.sun.source.tree | Fiji |
|
NIOByteArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
NIOCharArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
NIODoubleArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
NIOFloatArray | Core array type used for float[] dataAuthor:Stephan Preibisch, Stephan Saalfeld, Rick Lentz | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
NIOIntArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
NIOLongArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
NIOShortArray | | Class | mpicbg.imglib.container.basictypecontainer.array | Fiji |
|
NNearestNeighborSearch | | Class | fiji.util | Fiji |
|
NNearestNeighborSearch | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
|
Node | | Interface | fiji.util.node | Fiji |
|
Node | Can only have one parent, so there aren't cyclic graphs. | Class | ini.trakem2.display | Fiji |
|
Node | | Interface | mpicbg.imglib.algorithm.kdtree.node | Fiji |
|
NodeConfigurationUI | | Class | edu.utexas.clm.archipelago.ui | Fiji |
|
NodeCoordinator | | Class | edu.utexas.clm.archipelago.network.node | Fiji |
|
NodeParameters | | Class | edu.utexas.clm.archipelago.network.node | Fiji |
|
NodeParametersFactory | | Class | edu.utexas.clm.archipelago.network.node | Fiji |
|
NodeShell | Interface used to start remote nodes and potentially execute shell commands. | Interface | edu.utexas.clm.archipelago.network.shell | Fiji |
|
NodeShellListener | | Interface | edu.utexas.clm.archipelago.listen | Fiji |
|
NodeShellParameters | A class to support parameters for various kinds of node shells. | Class | edu.utexas.clm.archipelago.network.shell | Fiji |
|
NodeShellUserInfo | | Class | edu.utexas.clm.archipelago.network.shell.ssh | Fiji |
|
NodeStateListener | | Interface | edu.utexas.clm.archipelago.listen | Fiji |
|
NoninvertibleModelException | Signalizes that the Model is not invertible. | Class | stitching.model | Fiji |
|
NonLeaf | | Class | fiji.util.node | Fiji |
|
NonLeaf | | Class | mpicbg.imglib.algorithm.kdtree.node | Fiji |
|
NonLinearCoordinateTransform | | Class | mpicbg.trakem2.transform | Fiji |
|
NonLinearTransform | | Class | lenscorrection | Fiji |
|
NonLinearTransformMode | | Class | ini.trakem2.display | Fiji |
|
NoopAdapter | | Class | ij3d | Fiji |
|
NormalEstimator | | Class | math3d | Fiji |
|
Normalize | | Class | ini.trakem2.imaging.filters | Fiji |
|
Normalize | Becomes a normalized version of the given image, within min and max bounds, where all pixels take values between 0 and 1. | Class | script.imglib.algorithm | Fiji |
|
NormalizeImageFloat | Normalizes a given Image so that the sum of all of its pixels is equal to one (or approximately so). | Class | mpicbg.imglib.algorithm.math | Fiji |
|
NormalizeImageMinMax | | Class | mpicbg.imglib.algorithm.math | Fiji |
|
NormalizeLocalContrast | | Class | ini.trakem2.imaging.filters | Fiji |
|
NormalizeSum | | Class | script.imglib.algorithm | Fiji |
|
NormalizingRandomAccess | | Class | spim.process.fusion.weights | Fiji |
|
NormalizingRandomAccessibleInterval | | Class | spim.process.fusion.weights | Fiji |
|
NormMinMax | | Class | mpicbg.imglib.algorithm.function | Fiji |
|
NoSuitablePointsException | | Class | mpicbg.pointdescriptor.exception | Fiji |
|
Not | | Class | imglib.ops.condition | Fiji |
|
NotEnoughDataPointsException | Signalizes that there were not enough data points available to estimate theSee Also:Serialized Form | Class | stitching.model | Fiji |
|
NotesDialog | | Class | org.imagearchive.lsm.toolbox.gui | Fiji |
|
NoType | A pseudo-type used where no actual type is appropriate. | Interface | javax.lang.model.type | Fiji |
|
Nrrd_Reader | ImageJ plugin to read a file in Gordon Kindlmann's NRRD or 'nearly raw raster data' format, a simple format which handles | Class | io | Fiji |
|
Nrrd_Writer | | Class | io | Fiji |
|
NrrdHeader | Class to read and represent the header of a NRRD file. | Class | nrrd | Fiji |
|
NrrdInfo | This class contains the key information that describes a nrrd file The expectation is that it will be generated by parsing an existing file | Class | nrrd | Fiji |
|
NRRDTranslator | Container class for translators between OME and NRRD formats. | Class | io.scif.ome.translators | Fiji |
|
NucleiConfiguration | | Class | mpicbg.spim.registration.segmentation | Fiji |
|
Nucleus | | Class | mpicbg.spim.registration.segmentation | Fiji |
|
NucleusIdentification | The BeadIdentification object stores the link (via ID) to an Bead-object and not an actual instance, but a link to the ViewDataBeads object where it belongs to. | Class | mpicbg.spim.registration.segmentation | Fiji |
|
NucleusStructure | | Class | mpicbg.spim.registration.segmentation | Fiji |
|
NullFunction | NullFunction is a function that does not change the output. | Class | imglib.ops.function.pn | Fiji |
|
NullLink | | Class | mpicbg.imglib.cursor.link | Fiji |
|
NullLogger | | Class | edu.utexas.clm.archipelago.util | Fiji |
|
NullType | Represents the null type. | Interface | javax.lang.model.type | Fiji |
|
NumberedStringSorter | Sorts an array of Strings treating any sequences of digits as numbers, not single digits. | Class | i5d.util | Fiji |
|
NumberFunction | | Class | script.imglib.math.fn | Fiji |
|
NumberParser | A static utility class for parsing numbers from strings. | Class | fiji.util | Fiji |
|
NumberUtils | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
NumericalDerivative | approximates numerically the first and second derivatives of a function of a single variable and approximates gradient and | Class | pal.math | Fiji |
|
NumericType | | Interface | mpicbg.imglib.type.numeric | Fiji |
|
OBFTranslator | Container class for translators between OME and OBF formats. | Class | io.scif.ome.translators | Fiji |
|
Object3D | | Class | Utilities | Fiji |
|
Object_Inspector | | Class | fiji.debugging | Fiji |
|
OctreeDialog | | Class | octree | Fiji |
|
OldAppConfiguration | Fall-back plugin for ij-legacy. | Class | fiji.patches | Fiji |
|
OldLegacyEditor | Fall-back plugin for ij-legacy. | Class | fiji.patches | Fiji |
|
OMEMetadata | io. | Class | io.scif.ome | Fiji |
|
OMEMetadataService | A utility class for working with OME metadata objects, including MetadataStore and MetadataRetrieve. | Interface | io.scif.ome.services | Fiji |
|
OMETIFFFormat | OMETiffReader is the file format reader for OME-TIFF files. | Class | io.scif.ome.formats | Fiji |
|
OMETIFFTranslator | Container class for translators between OME and OMETIFF formats. | Class | io.scif.ome.translators | Fiji |
|
OMETranslator | Abstract base class for all Translator implementations that operate on OMEMetadata. | Class | io.scif.ome.translators | Fiji |
|
OMEXMLFormat | Format for OME-XML files. | Class | io.scif.ome.formats | Fiji |
|
OMEXMLService | SCIFIO service wrapper for OMEXMLService. | Interface | io.scif.ome.services | Fiji |
|
OMEXMLToolCommand | SCIFIOToolCommand plugin for printing OME-XML. | Class | io.scif.ome.commands | Fiji |
|
OnRequestUpdater | This class extends Thread and is suited to call methods that are typically called often, but takes time to complete, such as display refreshing. | Class | fiji.plugin.trackmate.util | Fiji |
|
Open | | Class | script.imglib.algorithm | Fiji |
|
Open_DAT_EMMENU | | Class | io | Fiji |
|
Open_DB_Project | | Class | ini.trakem2 | Fiji |
|
Open_DF3 | | Class | io | Fiji |
|
Open_Image5D | | Class | | Fiji |
|
Open_MRC_Leginon | | Class | io | Fiji |
|
Open_Project | | Class | ini.trakem2 | Fiji |
|
Open_Series_As_Image5D | Opens a series of images or image stacks and converts it to an Image5D. | Class | | Fiji |
|
Open_Video | | Class | video2 | Fiji |
|
OpenConnectomeDataset | An openconnecto. | Class | bdv.img.openconnectome | Fiji |
|
OpenConnectomeImageLoader | | Class | bdv.img.openconnectome | Fiji |
|
OpenConnectomeProject | oenconnecto. | Class | bdv.img.openconnectome | Fiji |
|
OpenConnectomeTokenInfo | | Class | bdv.img.openconnectome | Fiji |
|
OpenConnectomeVolatileArrayLoader | | Class | bdv.img.openconnectome | Fiji |
|
OpenerGenericDialog | | Class | spimopener | Fiji |
|
OpenImage5DAdapter | This class contains static methods, which handle the "open"-specific features of OpenImage5DWindow and OpenStackWindow: | Class | | Fiji |
|
OpenImage5DWindow | Image5DWindow, which issues DispChanged Events to registered Listeners, when the displayed slice has been changed. | Class | | Fiji |
|
OpenImagePlusPlugIn | ImageJ plugin to show the current image in BigDataViewer. | Class | bdv.ij | Fiji |
|
OpenImarisPlugIn | | Class | bdv.ij | Fiji |
|
OpenImg | | Class | spim.fiji.plugin.util | Fiji |
|
OpenStackAdapter | This class contains static methods, which handle the "open"-specific features of - converting a StackWindow to the appropriate class | Class | | Fiji |
|
OpenStackWindow | StackWindow, which issues DispChanged Events to registered Listeners, when the displayed slice has been changed. | Class | | Fiji |
|
Operation | | Interface | ini.trakem2.utils | Fiji |
|
Option | Base class for an option for one of the plugins. | Class | loci.plugins.prefs | Fiji |
|
OptionChecker | Interface for recognizing options. | Interface | javax.tools | Fiji |
|
OptionName | TODO: describe com. | Class | com.sun.tools.javac.main | Fiji |
|
OptionPanel | | Class | ini.trakem2.utils | Fiji |
|
Options | A table of all command-line options. | Class | com.sun.tools.javac.util | Fiji |
|
Options | | Class | vib.app | Fiji |
|
OptionsDialog | Base class for options dialogs. | Class | loci.plugins.prefs | Fiji |
|
OptionsList | Base class for ImageJ preferences for plugins. | Class | loci.plugins.prefs | Fiji |
|
Or | | Class | imglib.ops.condition | Fiji |
|
Or | | Class | imglib.ops.operator.binary | Fiji |
|
Or | | Class | script.imglib.math | Fiji |
|
OrConstant | | Class | imglib.ops.operator.unary | Fiji |
|
OrderedTransformations | | Class | vib.transforms | Fiji |
|
OrthogonalLineFunction | converts a multivariate function into a univariate function by keeping all but one argument constant | Class | pal.math | Fiji |
|
OrthogonalSearch | minimization of a real-valued function of several variables without using derivatives, using the simple | Class | pal.math | Fiji |
|
OrthoGroup | This class extends VoltexGroup. | Class | orthoslice | Fiji |
|
Orthoslice | Orthoslice extends VolumeRenderer and modifies it in a way so that not the whole volume is displayed, but only three orthogonal slices through the | Class | orthoslice | Fiji |
|
OtherInstance | | Class | fiji | Fiji |
|
OutOfBoundsStrategy | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyFactory | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyMirror | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyMirrorExpWindowing | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyMirrorExpWindowingFactory | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyMirrorFactory | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyPeriodic | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyPeriodicFactory | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyValue | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutOfBoundsStrategyValueFactory | | Class | mpicbg.imglib.outofbounds | Fiji |
|
OutputAlgorithm | | Interface | mpicbg.imglib.algorithm | Fiji |
|
OutputFunction | Interface for functions that return a new object, computed from two input arguments. | Interface | fiji.plugin.trackmate.graph | Fiji |
|
OverlapFusion | This class implements a fusion where only the pixel value of one of the images is used. | Class | mpicbg.stitching.fusion | Fiji |
|
OverlapProperties | | Class | stitching | Fiji |
|
Overlay | | Class | ini.trakem2.display | Fiji |
|
Overlay_Registered | | Class | util | Fiji |
|
OverlayAnimator | | Interface | bdv.viewer.animate | Fiji |
|
OverlayedImageCanvas | Extension of ImageCanvas to allow multiple overlaysAuthor:Ignacio Arganda-Carreras and Johannes SchindelinSee Also:Serialized Form | Class | fiji.util.gui | Fiji |
|
OverlayFusion | | Class | mpicbg.stitching.fusion | Fiji |
|
OverlayFusion | | Class | process | Fiji |
|
OverlayRegistered | | Class | util | Fiji |
|
P | | Class | ini.trakem2.imaging | Fiji |
|
Package_Maker | | Class | fiji.packaging | Fiji |
|
PackageElement | Represents a package program element. | Interface | javax.lang.model.element | Fiji |
|
Packager | | Class | fiji.packaging | Fiji |
|
Paintable | | Interface | ini.trakem2.display | Fiji |
|
PaintInvertibleCoordinateTransformThread | | Class | stitching.model | Fiji |
|
Pair | A generic class for pairs. | Class | com.sun.tools.javac.util | Fiji |
|
Pair | | Class | mpicbg.trakem2.util | Fiji |
|
PairIterator | An iterator over pairs of types. | Interface | net.imglib2 | Fiji |
|
PairwiseMatch | | Class | spim.process.interestpointregistration | Fiji |
|
PairWiseStitchingImgLib | Pairwise Stitching of two ImagePlus using ImgLib1 and PhaseCorrelation. | Class | mpicbg.stitching | Fiji |
|
PairWiseStitchingResult | | Class | mpicbg.stitching | Fiji |
|
Palette | A palette of 100 different colors. | Class | imagescience.color | Fiji |
|
PaneOwner | | Interface | stacks | Fiji |
|
Panorama_View | | Class | mpicbg.panorama | Fiji |
|
PanoramaCamera | | Class | mpicbg.panorama | Fiji |
|
ParallelMapping | Like clojure's pmap, given a sequence of inputs obtained from an Iterable, this Iterable will apply a function to each input ahead of consumption | Class | ini.trakem2.parallel | Fiji |
|
Param | This class stores the parameters to apply the consistent elastic registration and it is independent of the primary GUI. | Class | bunwarpj | Fiji |
|
ParameterizedTypeTree | A tree node for a type expression involving type parameters. | Interface | com.sun.source.tree | Fiji |
|
Parameters | | Class | edfgui | Fiji |
|
ParenthesizedTree | A tree node for a parenthesized expression. | Interface | com.sun.source.tree | Fiji |
|
parObject | | Class | | Fiji |
|
ParsePattern | | Class | mpicbg.spim.io | Fiji |
|
Parser | The parser maps a token sequence into an abstract syntax tree. | Class | com.sun.tools.javac.parser | Fiji |
|
Particle | | Class | process | Fiji |
|
Particle_Analyzer_3D | | Class | process3d | Fiji |
|
ParticleSaver | | Class | QuickPALM | Fiji |
|
Partition | Partition describes one partition file of a dataset that is split across multiple hdf5 files. | Class | bdv.img.hdf5 | Fiji |
|
Patch | | Class | ini.trakem2.display | Fiji |
|
PatchBottle | | Class | edu.utexas.clm.archipelago.ijsupport.bottle | Fiji |
|
PatchBottler | | Class | edu.utexas.clm.archipelago.ijsupport.bottle | Fiji |
|
PatchScript | | Class | ini.trakem2.scripting | Fiji |
|
PatchStack | Assumed is all Patch instances in the array are of the same size, live in consecutive layers of the same thickness. | Class | ini.trakem2.imaging | Fiji |
|
Path | | Class | tracing | Fiji |
|
PathAndFillListener | | Interface | tracing | Fiji |
|
PathAndFillManager | | Class | tracing | Fiji |
|
PathColorsCanvas | | Class | tracing | Fiji |
|
PathDownsampler | | Class | tracing | Fiji |
|
PathFitter | | Class | tracing | Fiji |
|
PathResult | | Class | tracing | Fiji |
|
Paths | This class converts command line arguments, environment variables and system properties (in File. | Class | com.sun.tools.javac.file | Fiji |
|
PathSubstitutingFileTranslator | | Class | edu.utexas.clm.archipelago.network.translation | Fiji |
|
PathTransformer | The int values are indexes into the image's samples, with z being 0-based. | Interface | tracing | Fiji |
|
PathWindow | | Class | tracing | Fiji |
|
Pbd16InputStream | Decompresses a binary InputStream using Sean Murphy's fast PBD pack-bits plus difference encoding. | Class | org.janelia.vaa3d.reader | Fiji |
|
Pbd8InputStream | Decompresses a binary InputStream using Sean Murphy's fast PBD pack-bits plus difference encoding. | Class | org.janelia.vaa3d.reader | Fiji |
|
PbdInputStream | Base class for Pbd8InputStream and Pbd16InputStream. | Class | org.janelia.vaa3d.reader | Fiji |
|
PCA_Registration | | Class | vib.oldregistration | Fiji |
|
PDF_Viewer | | Class | io | Fiji |
|
PDF_Writer | | Class | io | Fiji |
|
PDFWriter | | Class | results | Fiji |
|
Peak | | Class | mpicbg.stitching | Fiji |
|
Peak_Counter_Tool | | Class | sc.fiji.timelapse | Fiji |
|
PearsonsCorrelation | A class that represents the mean calculation of the two source images in the data container. | Class | algorithms | Fiji |
|
Penalty | | Class | util | Fiji |
|
PerEdgeFeatureColorGenerator | | Class | fiji.plugin.trackmate.visualization | Fiji |
|
PerformanceProfiler | A Javassist-backed performance profiler. | Class | fiji | Fiji |
|
PerTrackFeatureColorGenerator | A TrackColorGenerator that generate colors based on the whole trackAuthor:Jean-Yves Tinevez | Class | fiji.plugin.trackmate.visualization | Fiji |
|
PhaseCorrelation | | Class | mpicbg.imglib.algorithm.fft | Fiji |
|
PhaseCorrelationCalculator | | Class | ini.trakem2.imaging | Fiji |
|
PhaseCorrelationPeak | | Class | mpicbg.imglib.algorithm.fft | Fiji |
|
Pic | | Class | fiji.plugin.volumeviewer | Fiji |
|
Picker | This class is a helper class which implements functions for picking. | Class | ij3d.behaviors | Fiji |
|
PickImagePeaks | This class implements a very simple peak-picker, with optional ellipsoidal peak suppression. | Class | mpicbg.imglib.algorithm.math | Fiji |
|
PickPeaks | | Class | script.imglib.analysis | Fiji |
|
PictWidgets | Custom widgets for configuring Bio-Formats PICT support. | Class | loci.plugins.config | Fiji |
|
PiecewiseLinearCdf | | Class | histogram2 | Fiji |
|
Pipe | | Class | ij3d | Fiji |
|
Pipe | | Class | ini.trakem2.display | Fiji |
|
PipelineImage | | Class | io.scif.formats.imaris | Fiji |
|
PIV_analyser | This plugin calculates the optic flow for each pair of images made with the given stack. | Class | | Fiji |
|
PIVAnalyserTestDrive | | Class | | Fiji |
|
PixelDisplay | | Class | view5d | Fiji |
|
PixelFusion | | Interface | mpicbg.stitching.fusion | Fiji |
|
PixelGridContainer | | Interface | mpicbg.imglib.container | Fiji |
|
PixelGridContainerFactory | | Class | mpicbg.imglib.container | Fiji |
|
PixelGridContainerImpl | | Class | mpicbg.imglib.container | Fiji |
|
PixelOnBorder | | Class | imglib.ops.condition | Fiji |
|
PixelPairs | | Interface | distance | Fiji |
|
PixelStats | Class used to track statistics with low memory footprint where large number data sets are expected User: Tom Larkworthy | Class | adt | Fiji |
|
PlanarAccess | Interface allowing access to data on a plane-by-plane basis. | Interface | mpicbg.imglib.container.basictypecontainer | Fiji |
|
PlanarContainer | A Container that stores data in an array of 2d-slices each as a linear array of basic types. | Class | mpicbg.imglib.container.planar | Fiji |
|
PlanarContainerFactory | Factory that creates an appropriate PlanarContainer. | Class | mpicbg.imglib.container.planar | Fiji |
|
PlanarCursor | Basic Iterator for PlanarContainersAuthor:Stephan Preibisch, Stephan Saalfeld | Class | mpicbg.imglib.cursor.planar | Fiji |
|
PlanarCursor2D | Basic Iterator for 2d PlanarContainersAuthor:Stephan Saalfeld, Stephan Saalfeld | Class | mpicbg.imglib.cursor.planar | Fiji |
|
PlanarLocalizableByDimCursor | Positionable for a PlanarContainersAuthor:Stephan Preibisch, Stephan Saalfeld | Class | mpicbg.imglib.cursor.planar | Fiji |
|
PlanarLocalizableByDimOutOfBoundsCursor | Positionable with OutOfBoundsStrategy for aAuthor:Stephan Preibisch, Stephan Saalfeld | Class | mpicbg.imglib.cursor.planar | Fiji |
|
PlanarLocalizableCursor | Localizing Iterator for a PlanarContainersAuthor:Stephan Preibisch, Stephan Saalfeld | Class | mpicbg.imglib.cursor.planar | Fiji |
|
PlanarLocalizablePlaneCursor | | Class | mpicbg.imglib.cursor.planar | Fiji |
|
Plane | | Class | math3d | Fiji |
|
Plot_Dots | | Class | process3d | Fiji |
|
PlotNSpotsVsTimeAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
PlotUtils | | Class | sc.fiji.timelapse | Fiji |
|
PluginHelper | | Class | bdv.ij.util | Fiji |
|
PluginHelper | | Class | spim.fiji.plugin.resave | Fiji |
|
PlugInInstaller | | Class | fiji | Fiji |
|
Pnt | | Class | delaunay | Fiji |
|
Point | A point in 5D space. | Class | imagescience.shape | Fiji |
|
Point | This class represents a 3D point or position on a 3D image. | Class | sc.fiji.analyzeSkeleton | Fiji |
|
Point | An n-dimensional point. | Class | stitching.model | Fiji |
|
Point2D | | Class | stitching | Fiji |
|
Point3D | This class represents a point in a 3D coordinate system. | Class | jRenderer3D | Fiji |
|
Point3d | | Class | math3d | Fiji |
|
Point3D | | Class | stitching | Fiji |
|
PointAction | Class for all actions related with points in the bUnwarpJ interface: moving, adding and deleting landmarks, and painting the masks. | Class | bunwarpj | Fiji |
|
PointBottle | A PointBottle to support synchronized point objects across cluster nodesSee Also:Serialized Form | Class | edu.utexas.clm.archipelago.ijsupport.bottle | Fiji |
|
PointBottler | | Class | edu.utexas.clm.archipelago.ijsupport.bottle | Fiji |
|
PointHandler | Class to deal with handle points in bUnwarpJ: here we have the methods to paint the landmarks and the masks. | Class | bunwarpj | Fiji |
|
PointInImage | | Class | tracing | Fiji |
|
PointList | | Class | vib | Fiji |
|
PointListDialog | This class represents a window which can hold a set of PointListPanels. | Class | ij3d.pointlist | Fiji |
|
PointListPanel | This class is a Panel showing a PointList as a list, which allows to modify the point list: Adding, deleting points, moving them up and down, etc. | Class | ij3d.pointlist | Fiji |
|
PointListShape | This class extends BranchGroup to represent a PointList as a number of spheres in the universe. | Class | ij3d.pointlist | Fiji |
|
PointMatch | A link between two Points that are expected to be ideally at the same location in the world coordinate space. | Class | stitching.model | Fiji |
|
PointMatchFilter | | Interface | org.janelia.intensity | Fiji |
|
PointMatchGeneric | | Class | mpicbg.spim.mpicbg | Fiji |
|
PointMatchIdentification | | Interface | mpicbg.icp | Fiji |
|
PointMatchStitching | | Class | mpicbg.stitching | Fiji |
|
PointNode | | Class | mpicbg.pointdescriptor.test | Fiji |
|
PointPicker_ | This class is the only one that is accessed directly by imageJ; it attaches listeners and dies. | Class | | Fiji |
|
Points | class that represents a collection of Points Optimized for infrequent addAll operations, by simply adding a reference to the child Points object | Class | adt | Fiji |
|
Points_Dialog | | Class | vib | Fiji |
|
PointSelectionBehavior | | Class | tracing | Fiji |
|
PointToolbar | Class to deal with the point toolbar option in the bUnwarpJ interface: draw the toolbar and change between tools. | Class | bunwarpj | Fiji |
|
Pointwise | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Interface | imageware | Fiji |
|
PoissonGenerator | Poisson random number generator. | Class | imagescience.random | Fiji |
|
Polygon | A polygon in the x-y plane. | Class | imagescience.shape | Fiji |
|
PolygonRoiPublic | | Class | sc.fiji.timelapse | Fiji |
|
Polyline | A sequence of points that make multiple chained line segments. | Class | ini.trakem2.display | Fiji |
|
PolynomialModel2D | A wrpper for NonLinearTransform and the AbstractAffineModel2D to which it is regularized. | Class | lenscorrection | Fiji |
|
PolynomialTransform2D | n-th order 2d polynomial transform. | Class | mpicbg.trakem2.transform | Fiji |
|
Pool | An internal structure that corresponds to the constant pool of a classfile. | Class | com.sun.tools.javac.jvm | Fiji |
|
Position | A class that defines source code positions as simple character offsets from the beginning of the file. | Class | com.sun.tools.javac.util | Fiji |
|
PositionLabel | | Class | view5d | Fiji |
|
PostProcessing | | Class | edf | Fiji |
|
Pow | | Class | script.imglib.math | Fiji |
|
Precision | | Class | mpicbg.imglib.algorithm | Fiji |
|
PreDeconvolutionFusion | | Class | mpicbg.spim.fusion | Fiji |
|
PreDeconvolutionFusionInterface | | Interface | mpicbg.spim.fusion | Fiji |
|
PreDeconvolutionFusionSequential | | Class | mpicbg.spim.fusion | Fiji |
|
PreDefinedBoundingBox | | Class | spim.process.fusion.boundingbox | Fiji |
|
PredefinedCellContainerFactory | | Class | mpicbg.imglib.wrapper | Fiji |
|
Predicate | | Interface | net.imglib2.predicate | Fiji |
|
PredicateCursor | The PredicateCursor traverses a whole image but only returns those pixels for which the Predicate returns true. | Class | net.imglib2 | Fiji |
|
Prefetcher | | Class | bdv.viewer.render | Fiji |
|
Prefilter | Prefilters an array or image for different interpolation schemes. | Class | imagescience.transform | Fiji |
|
Prefs | | Class | bdv.util | Fiji |
|
Prettify_Wiki_Screenshot | | Class | fiji | Fiji |
|
Pretty | Prints out a tree as an indented Java source program. | Class | com.sun.tools.javac.tree | Fiji |
|
PreviewRegistration | | Class | mpicbg.spim.vis3d | Fiji |
|
Primitive | | Class | customnode | Fiji |
|
PrimitiveDialogs | | Class | ij3d.gui | Fiji |
|
PrimitiveType | Represents a primitive type. | Interface | javax.lang.model.type | Fiji |
|
PrimitiveTypeTree | A tree node for a primitive type. | Interface | com.sun.source.tree | Fiji |
|
PrintingProcessor | A processor which prints out elements. | Class | com.sun.tools.javac.processing | Fiji |
|
PrintSequenceMipmapInfo | | Class | bdv.util | Fiji |
|
PrintStreamLogger | | Class | edu.utexas.clm.archipelago.util | Fiji |
|
Process | Biomedical Imaging Group Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland | Interface | imageware | Fiji |
|
Process | For all methods, if the number of processors given as argument is zero or larger than the maximum available plus 2, the number of processors will be adjusted to fall within the range [1, max+2]. | Class | ini.trakem2.parallel | Fiji |
|
Process | | Class | script.imglib.algorithm | Fiji |
|
ProcessDOG | | Class | spim.process.interestpointdetection | Fiji |
|
ProcessDOM | | Class | spim.process.interestpointdetection | Fiji |
|
ProcessForDeconvolution | Fused individual images for each input stack, uses the exporter directlyAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.deconvolution | Fiji |
|
ProcessFusion | | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessIndependent | Fused individual images for each input stack, uses the exporter directlyAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessIndependentPortion | Fuse one portion of a paralell fusion, supports no weightsAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessingEnvironment | An annotation processing tool framework will provide an annotation processor with an object implementing this interface so the processor can use facilities | Interface | javax.annotation.processing | Fiji |
|
ProcessListener | ProcessListener interface, used to notify when a ProcessManager has been returned fromAuthor:Larry Lindsey | Interface | edu.utexas.clm.archipelago.listen | Fiji |
|
ProcessManager | | Class | edu.utexas.clm.archipelago.compute | Fiji |
|
ProcessManagerCoreComparator | | Class | edu.utexas.clm.archipelago.util | Fiji |
|
Processor | The interface for an annotation processor. | Interface | javax.annotation.processing | Fiji |
|
ProcessParalell | | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessParalellPortion | Fuse one portion of a paralell fusion, supports no weightsAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessParalellPortionWeight | Fuse one portion of a paralell fusion, supports one weight functionAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessParalellPortionWeights | Fuse one portion of a paralell fusion, supports many weight functionsAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessSequential | | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessSequentialPortion | Fuse one portion of a sequential fusion, supports no weights This is basically identical to the parallel fusion except it does store the weights | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessSequentialPortionWeight | Fuse one portion of a sequential fusion, supports one weight function This is basically identical to the parallel fusion except it does store the weights | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessSequentialPortionWeights | Fuse one portion of a paralell fusion, supports many weight functionsAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.weightedavg | Fiji |
|
ProcessTopology | | Class | edf | Fiji |
|
Profile | A class to be a user-outlined profile over an image, which is painted with a particular color and also holds an associated text label. | Class | ini.trakem2.display | Fiji |
|
ProfileStack | | Class | sc.fiji.timelapse | Fiji |
|
ProgramConfiguration | Copyright: Copyright (c) 2006 Company: Diplomarbeit - IZBI Leipzig/TU Dresden | Class | mpicbg.spim.io | Fiji |
|
ProgressBar | | Class | bunwarpj | Fiji |
|
ProgressCanvas | | Class | landmarks | Fiji |
|
ProgressIndicator | | Class | vib.app.gui | Fiji |
|
Progressor | Wrapper around ImageJ's progress bar. | Class | imagescience.utility | Fiji |
|
ProgressTracker | | Class | imglib.ops.observer | Fiji |
|
ProgressWindow | | Class | landmarks | Fiji |
|
ProgressWriter | | Interface | bdv.export | Fiji |
|
ProgressWriterConsole | | Class | bdv.export | Fiji |
|
ProgressWriterIJ | | Class | bdv.ij.util | Fiji |
|
ProgressWriterIJ | | Class | spim.fiji.plugin.resave | Fiji |
|
Project | The top-level class in control. | Class | ini.trakem2 | Fiji |
|
Projector | | Interface | spimopener | Fiji |
|
ProjectThing | | Class | ini.trakem2.tree | Fiji |
|
ProjectTiler | | Class | ini.trakem2.persistence | Fiji |
|
ProjectToolbar | | Class | ini.trakem2.utils | Fiji |
|
ProjectTree | A class to hold a tree of Thing nodesSee Also:Serialized Form | Class | ini.trakem2.tree | Fiji |
|
PropagatedException | Used to propagate exceptions through to the user. | Class | com.sun.tools.javac.util | Fiji |
|
ProposeMipmaps | Propose number of mipmap levels, as well subsampling factors and chunk size Choice of proposed chunksize is not based on any hard benchmark data | Class | bdv.export | Fiji |
|
Psychomorph_TEM_Reader | | Class | | Fiji |
|
QTWidgets | Custom widgets for configuring Bio-Formats QuickTime support. | Class | loci.plugins.config | Fiji |
|
Quantile_Based_Normalization | | Class | util | Fiji |
|
Quaternion | | Class | mpicbg.pointdescriptor.matcher | Fiji |
|
QueueJumpingKeyListener | | Class | tracing | Fiji |
|
QueueListener | | Interface | edu.utexas.clm.archipelago.listen | Fiji |
|
QuickCallable | | Class | edu.utexas.clm.archipelago.compute | Fiji |
|
QuickRunnable | | Class | edu.utexas.clm.archipelago.compute | Fiji |
|
Quicksortable | Copyright: Copyright (c) 2007 This program is free software; you can redistribute it and/or | Interface | mpi.fruitfly.math | Fiji |
|
Quicksortable | | Interface | stitching | Fiji |
|
Radial_Gradient | | Class | fiji.drawing | Fiji |
|
Radial_Reslice | | Class | fiji.stacks | Fiji |
|
RadiusNeighborSearch | | Class | fiji.util | Fiji |
|
RadiusNeighborSearch | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
|
RadiusToEstimatedAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
RagMipMaps | Like RawMipMaps, but the alpha channel is compressed with GZIP. | Class | ini.trakem2.io | Fiji |
|
Random | | Class | script.imglib.math | Fiji |
|
RandomAccessInputStreamWrapper | Wrapper class to convert RandomAccessInputStream to RandomAccessInputStream. | Class | io.scif.bf.wrapper | Fiji |
|
RandomAccessInputStreamWrapper | Wrapper class to convert RandomAccessInputStream to RandomAccessInputStream. | Class | io.scif.common | Fiji |
|
RandomGenerator | Interface for random number generators. | Interface | imagescience.random | Fiji |
|
Randomizer | | Class | imagescience.random | Fiji |
|
RandPermutation | Lionel. | Class | utils | Fiji |
|
RangeDialog | Bio-Formats Importer range chooser dialog box. | Class | loci.plugins.in | Fiji |
|
RankFilter | | Class | ini.trakem2.imaging.filters | Fiji |
|
RANSAC | | Class | spim.process.interestpointregistration | Fiji |
|
RANSACParameters | | Class | spim.process.interestpointregistration | Fiji |
|
RansacRegressionFilter | | Class | org.janelia.intensity | Fiji |
|
RansacRegressionReduceFilter | | Class | org.janelia.intensity | Fiji |
|
Raster_Rigid | | Class | vib | Fiji |
|
RATS_ | RATS_ (Robust Automatic Threshold Selection) ImageJ plugin. | Class | | Fiji |
|
RATSQuadtree | | Class | | Fiji |
|
RawMipMaps | | Class | ini.trakem2.io | Fiji |
|
Reader | | Class | org.imagearchive.lsm.reader | Fiji |
|
Reader | | Class | org.imagearchive.lsm.toolbox | Fiji |
|
ReaderToolkit | | Class | org.imagearchive.lsm.toolbox | Fiji |
|
ReadXML | | Class | | Fiji |
|
RealARGBColorConverter | | Class | net.imglib2.display | Fiji |
|
RealARGBColorConverterSetup | | Class | bdv.tools.brightness | Fiji |
|
RealFunction | | Interface | imglib.ops.function | Fiji |
|
RealHistogramBinFactory | | Class | mpicbg.imglib.algorithm.histogram.arbitrary | Fiji |
|
RealRandomAccessibleSource | A Source wrapping some RealRandomAccessible. | Class | bdv.util | Fiji |
|
RealType | | Interface | mpicbg.imglib.type.numeric | Fiji |
|
RealTypeConverter | | Class | mpicbg.imglib.function | Fiji |
|
RealTypeDisplay | | Class | mpicbg.imglib.image.display | Fiji |
|
RealTypeImpl | | Class | mpicbg.imglib.type.numeric.real | Fiji |
|
Rebin | Plugin which takes an ImagePlus and rebins the pixel values to the specified range. | Class | process3d | Fiji |
|
Rebin_ | Plugin which takes an ImagePlus and rebins the pixel values to the specified range. | Class | process3d | Fiji |
|
RecalculateFeatureAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
Recent_Commands | | Class | fiji.util | Fiji |
|
Reciprocal | | Class | imglib.ops.operator.unary | Fiji |
|
RecognizedOptions | TODO: describe com. | Class | com.sun.tools.javac.main | Fiji |
|
Reconstruct_Dataset | | Class | QuickPALM | Fiji |
|
Reconstruct_Reader | | Class | edu.utexas.clm.reconstructreader.reconstruct | Fiji |
|
Reconstruct_Writer | | Class | edu.utexas.clm.reconstructreader.trakem2 | Fiji |
|
ReconstructArea | Reconstruct an Area from a list of XML Class | | Fiji | |
|
SynchronizedTree | A tree node for a 'synchronized' statement. | Interface | com.sun.source.tree | Fiji |
|
Tag | | Class | ini.trakem2.display | Fiji |
|
Taggable | | Interface | ini.trakem2.display | Fiji |
|
Tan | | Class | script.imglib.math | Fiji |
|
Tanh | | Class | script.imglib.math | Fiji |
|
TarBz2Packager | | Class | fiji.packaging | Fiji |
|
Target | The classfile version target. | Class | com.sun.tools.javac.jvm | Fiji |
|
TarGzPackager | | Class | fiji.packaging | Fiji |
|
TarPackager | | Class | fiji.packaging | Fiji |
|
TaskEvent | Provides details about work that has been done by the JDK Java Compiler, javac. | Class | com.sun.source.util | Fiji |
|
TaskFactory | | Class | ini.trakem2.parallel | Fiji |
|
TaskListener | Provides a listener to monitor the activity of the JDK Java Compiler, javac. | Interface | com.sun.source.util | Fiji |
|
TaskOnEDT | | Class | ini.trakem2.utils | Fiji |
|
TemplateThing | | Class | ini.trakem2.tree | Fiji |
|
TemplateTree | | Class | ini.trakem2.tree | Fiji |
|
Terminal | The two possible segments, represented as special terminal nodes in the graph. | Class | graphcut | Fiji |
|
Test_Cluster | | Class | edu.utexas.clm.archipelago.example | Fiji |
|
Test_Java3D | | Class | | Fiji |
|
Test_JEP | | Class | fiji.process | Fiji |
|
Test_Save | For testing ImageJ extensions for saving extra MetadataAuthor:Joachim Walter | Class | | Fiji |
|
Test_Single_Voxel | | Class | ij3d | Fiji |
|
Test_Single_Voxel | | Class | tracing | Fiji |
|
TestClassifier | | Class | lineage | Fiji |
|
TestComputeCurvatures_ | | Class | features | Fiji |
|
TestGraphicsSource | | Class | ini.trakem2.display.graphics | Fiji |
|
TestKDTree | | Class | fiji.util | Fiji |
|
TestKDTree | | Class | mpicbg.imglib.algorithm.kdtree | Fiji |
|
TestPointDescriptor | | Class | mpicbg.pointdescriptor.test | Fiji |
|
Tetrahedron | | Class | math3d | Fiji |
|
Text3D | This class represents a text element in a 3D coordinate system. | Class | jRenderer3D | Fiji |
|
TextAreaWriter | Writer implementation that writes to a JTextArea document. | Class | loci.plugins.config | Fiji |
|
TextFieldFocus | TextField that sends an ActionEvent when the integer Value has changed either by hitting return (as the normal AWT TextField) or by | Class | | Fiji |
|
TextFileAccess | | Class | mpicbg.spim.io | Fiji |
|
TextFileAccess | | Class | mpicbg.stitching | Fiji |
|
TextOverlayAnimator | Draw one line of text in the center or bottom right of the display. | Class | bdv.viewer.animate | Fiji |
|
Texture_By_Ref | | Class | textureByRef | Fiji |
|
Texture_By_Ref_col | | Class | textureByRef | Fiji |
|
TFalpha1 | | Class | fiji.plugin.volumeviewer | Fiji |
|
TFalpha2 | | Class | fiji.plugin.volumeviewer | Fiji |
|
TFalpha3 | | Class | fiji.plugin.volumeviewer | Fiji |
|
TFalpha4 | | Class | fiji.plugin.volumeviewer | Fiji |
|
TFrgb | | Class | fiji.plugin.volumeviewer | Fiji |
|
TGMMImporter | | Class | fiji.plugin.trackmate.io | Fiji |
|
Thing | | Interface | ini.trakem2.tree | Fiji |
|
ThinOut_Detections | | Class | spim.fiji.plugin | Fiji |
|
ThinPlateR2LogRSplineKernelTransform | Began as a port of itk's itkKernelTransform. | Class | jitk.spline | Fiji |
|
ThinPlateSplineMapping | | Class | mpicbg.ij | Fiji |
|
ThinPlateSplineTransform | | Class | mpicbg.trakem2.transform | Fiji |
|
Thread_Killer | | Class | | Fiji |
|
ThreadEdf | | Class | edfgui | Fiji |
|
Threads | | Class | spim | Fiji |
|
ThreadTopoProc | | Class | edfgui | Fiji |
|
Three_Pane_Crop | | Class | stacks | Fiji |
|
ThreePaneContainer | | Class | stacks | Fiji |
|
ThreePaneContainer_ | | Class | stacks | Fiji |
|
ThreePaneCrop | | Class | stacks | Fiji |
|
ThreePaneCropCanvas | | Class | stacks | Fiji |
|
ThreePanes | | Class | stacks | Fiji |
|
ThreePanes_ | | Class | stacks | Fiji |
|
ThreePanesCanvas | | Class | stacks | Fiji |
|
Threshold | | Class | vib.transforms | Fiji |
|
Thresholded | | Class | distance | Fiji |
|
Thresholder | | Class | imagescience.segment | Fiji |
|
Thresholder | | Class | vib.segment | Fiji |
|
ThresholdMode | An enumerator for different modes of threshold handling. | Class | gadgets | Fiji |
|
ThrowTree | A tree node for a 'throw' statement. | Interface | com.sun.source.tree | Fiji |
|
ThumbLoader | Loads thumbnails for Bio-Formats Importer series chooser in a separate thread. | Class | loci.plugins.in | Fiji |
|
TicToc | | Class | fiji.util | Fiji |
|
TiffDelegateWidgets | Custom widgets for configuring Bio-Formats TIFF support. | Class | loci.plugins.config | Fiji |
|
TIFFTranslator | Container class for translators between OME and TIFF formats. | Class | io.scif.ome.translators | Fiji |
|
Tile | | Class | stitching.model | Fiji |
|
TileCanvas | | Class | i5d.gui | Fiji |
|
TileConfiguration | | Class | mpicbg.trakem2.align | Fiji |
|
TileConfiguration | A configuration of rigidly transformed tiles. | Class | stitching.model | Fiji |
|
TileConfigurationPhaseCorrelation | | Class | mpicbg.spim.mpicbg | Fiji |
|
TileConfigurationSPIM | | Class | mpicbg.spim.mpicbg | Fiji |
|
TileConfigurationStitching | | Class | mpicbg.stitching | Fiji |
|
TileImgLoader | | Class | bdv.ij.export.tiles | Fiji |
|
TileSPIM | | Class | mpicbg.spim.mpicbg | Fiji |
|
Time_Stamper | | Class | | Fiji |
|
TimeDirectedDepthFirstIterator | | Class | fiji.plugin.trackmate.graph | Fiji |
|
TimeDirectedNeighborIndex | | Class | fiji.plugin.trackmate.graph | Fiji |
|
TimeDirectedSortedDepthFirstIterator | | Class | fiji.plugin.trackmate.graph | Fiji |
|
TimeLapseDisplay | | Class | fiji.plugin.timelapsedisplay | Fiji |
|
TimeLapseDisplay | | Class | spim.process.interestpointregistration.registrationstatistics | Fiji |
|
TimelapseListener | | Interface | ij3d | Fiji |
|
Timeline | | Class | view4d | Fiji |
|
TimelineGUI | This class implements the window with the controls for the 4D viewer. | Class | view4d | Fiji |
|
TimePoint | | Class | io.scif.formats.imaris | Fiji |
|
TimePoint | | Class | mpicbg.spim.data.sequence | Fiji |
|
TimePointListener | | Interface | bdv.viewer | Fiji |
|
TimePoints | | Class | mpicbg.spim.data.sequence | Fiji |
|
TimePointsPattern | | Class | mpicbg.spim.data.sequence | Fiji |
|
Timer | Facilitates measuring of the computation time consumed by a process. | Class | imagescience.utility | Fiji |
|
Timer | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
|
TimeStamps | | Class | org.imagearchive.lsm.toolbox.info | Fiji |
|
TissueStatistics | | Class | vib.app.module | Fiji |
|
TissueStatistics_ | | Class | vib | Fiji |
|
TitledThing | | Interface | ini.trakem2.tree | Fiji |
|
TJ | | Class | transformj | Fiji |
|
TJ_About | | Class | transformj | Fiji |
|
TJ_Affine | | Class | transformj | Fiji |
|
TJ_Crop | | Class | transformj | Fiji |
|
TJ_Embed | | Class | transformj | Fiji |
|
TJ_Help | | Class | transformj | Fiji |
|
TJ_Matrix | | Class | transformj | Fiji |
|
TJ_Mirror | | Class | transformj | Fiji |
|
TJ_Options | | Class | transformj | Fiji |
|
TJ_Panel | | Class | transformj | Fiji |
|
TJ_Rotate | | Class | transformj | Fiji |
|
TJ_Scale | | Class | transformj | Fiji |
|
TJ_Translate | | Class | transformj | Fiji |
|
TJ_Turn | | Class | transformj | Fiji |
|
TMLHandler | Creates the project objects from an XML file (TrakEM2 Markup Language Handler). | Class | ini.trakem2.persistence | Fiji |
|
TMUtils | | Class | fiji.plugin.trackmate.util | Fiji |
|
TmXmlKeys | Contains the key string used for xml marshaling. | Class | fiji.plugin.trackmate.io | Fiji |
|
TmXmlReader | | Class | fiji.plugin.trackmate.io | Fiji |
|
TmXmlReader_v12 | A compatibility xml loader than can load TrackMate xml file saved for version prior to 2. | Class | fiji.plugin.trackmate.io | Fiji |
|
TmXmlReader_v20 | | Class | fiji.plugin.trackmate.io | Fiji |
|
TmXmlWriter | | Class | fiji.plugin.trackmate.io | Fiji |
|
ToAST25_ | | Class | | Fiji |
|
ToDegrees | | Class | script.imglib.math | Fiji |
|
Todo | A queue of all as yet unattributed classes. | Class | com.sun.tools.javac.comp | Fiji |
|
Toggle_Cluster_Options | | Class | spim.fiji.plugin | Fiji |
|
ToggleDialogAction | | Class | bdv.tools | Fiji |
|
Token | An interface that defines codes for Java source tokens returned from lexical analysis. | Class | com.sun.tools.javac.parser | Fiji |
|
Tool | Common interface for tools that can be invoked from a program. | Interface | javax.tools | Fiji |
|
ToolProvider | Provides methods for locating tool providers, for example, providers of compilers. | Class | javax.tools | Fiji |
|
Tools | | Class | edf | Fiji |
|
ToolToggleListener | | Interface | fiji.tool | Fiji |
|
ToolWithOptions | | Interface | fiji.tool | Fiji |
|
ToOMETranslator | Abstract base class for all io. | Class | io.scif.ome.translators | Fiji |
|
ToplevelImageJApp | An extension of ImageJApp that provides the legacy ImageJ 1. | Class | net.imagej.app | Fiji |
|
ToRadians | | Class | script.imglib.math | Fiji |
|
TorstenRaw_GZ_Reader | This plugin loads the raw binary files returnedby Torsten Rohlfing's software | Class | io | Fiji |
|
TPlugIn | | Interface | ini.trakem2.plugin | Fiji |
|
TraceLoaderListener | | Interface | tracing | Fiji |
|
TracerCanvas | | Class | tracing | Fiji |
|
TracerThread | | Class | tracing | Fiji |
|
Track | | Class | org.imagearchive.lsm.toolbox.info.scaninfo | Fiji |
|
TrackAnalyzer | Mother interface for the classes that can compute the feature of tracks. | Interface | fiji.plugin.trackmate.features.track | Fiji |
|
TrackAnalyzerProvider | A provider for the track analyzers provided in the GUI. | Class | fiji.plugin.trackmate.providers | Fiji |
|
TrackBranchAnalysis | | Class | fiji.plugin.trackmate.action | Fiji |
|
TrackBranchingAnalyzer | | Class | fiji.plugin.trackmate.features.track | Fiji |
|
TrackColorGenerator | Interface for functions that can generate track colors, with a different color for each vertex and edge. | Interface | fiji.plugin.trackmate.visualization | Fiji |
|
TrackDisplayNode | | Class | fiji.plugin.trackmate.visualization.threedviewer | Fiji |
|
TrackDurationAnalyzer | | Class | fiji.plugin.trackmate.features.track | Fiji |
|
TrackerChoiceDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
TrackerConfigurationDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
TrackerKeys | | Class | fiji.plugin.trackmate.tracking | Fiji |
|
TrackerProvider | | Class | fiji.plugin.trackmate.providers | Fiji |
|
TrackFeatureCalculator | A class dedicated to centralizing the calculation of the numerical features of tracks, through TrackAnalyzers. | Class | fiji.plugin.trackmate.features | Fiji |
|
TrackFeatureGrapher | | Class | fiji.plugin.trackmate.features | Fiji |
|
TrackFilterDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
TrackIndexAnalyzer | | Class | fiji.plugin.trackmate.features.track | Fiji |
|
TrackingDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
TrackLocationAnalyzer | | Class | fiji.plugin.trackmate.features.track | Fiji |
|
TrackMate | The TrackMate_ class runs on the currently active time-lapse image (2D or 3D) and both identifies and tracks bright spots over time. | Class | fiji.plugin.trackmate | Fiji |
|
TrackMateAction | This interface describe a track mate action, that can be run on a TrackMate object to change its content or properties. | Interface | fiji.plugin.trackmate.action | Fiji |
|
TrackMateActionFactory | | Interface | fiji.plugin.trackmate.action | Fiji |
|
TrackMateBatch | | Class | fiji.plugin.trackmate | Fiji |
|
TrackMateGUIController | | Class | fiji.plugin.trackmate.gui | Fiji |
|
TrackMateGUIModel | | Class | fiji.plugin.trackmate.gui | Fiji |
|
TrackMateModelView | | Interface | fiji.plugin.trackmate.visualization | Fiji |
|
TrackMateModule | Interface for TrackMate modules. | Interface | fiji.plugin.trackmate | Fiji |
|
TrackMatePlugIn_ | | Class | fiji.plugin.trackmate | Fiji |
|
TrackMateWizard | | Class | fiji.plugin.trackmate.gui | Fiji |
|
TrackModel | A component of Model specialized for tracksAuthor:Jean-Yves Tinevez | Class | fiji.plugin.trackmate | Fiji |
|
TrackNavigator | | Class | fiji.plugin.trackmate.util | Fiji |
|
TrackOverlay | The overlay class in charge of drawing the tracks on the hyperstack window. | Class | fiji.plugin.trackmate.visualization.hyperstack | Fiji |
|
TrackScheme | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeActions | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeFactory | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeFrame | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeGraphComponent | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeGraphLayout | This mxGraphLayout arranges cells on a graph in lanes corresponding to tracks. | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeKeyboardHandler | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemePopupMenu | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeStylist | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeSvgCanvas | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSchemeToolbar | | Class | fiji.plugin.trackmate.visualization.trackscheme | Fiji |
|
TrackSegmentCostMatrixCreator | Creates the cost matrix roughly described in Figure 1c in the paper: Jaqaman, K. | Class | fiji.plugin.trackmate.tracking.oldlap.costmatrix | Fiji |
|
TrackSpeedStatisticsAnalyzer | | Class | fiji.plugin.trackmate.features.track | Fiji |
|
TrackSpotQualityFeatureAnalyzer | | Class | fiji.plugin.trackmate.features.track | Fiji |
|
TrakEM2Archipelago | | Class | edu.utexas.clm.archipelago.ijsupport | Fiji |
|
TrakEM2MLParser | A class to parse a file in TrakEM2 XML format. | Class | ini.trakem2.tree | Fiji |
|
Trakem2Translator | | Class | edu.utexas.clm.reconstructreader.trakem2 | Fiji |
|
TransceiverExceptionListener | | Interface | edu.utexas.clm.archipelago.listen | Fiji |
|
TransceiverListener | | Interface | edu.utexas.clm.archipelago.listen | Fiji |
|
Transfer_Channel_Settings | | Class | | Fiji |
|
TransferableNode | Adapted from freely available code by DeuDeu from http://forum. | Class | ini.trakem2.tree | Fiji |
|
Transform | Represents a 3D affine transformation matrix. | Class | imagescience.transform | Fiji |
|
Transform | | Interface | vib.transforms | Fiji |
|
Transform_IO | | Class | math3d | Fiji |
|
Transform_ThinPlateSpline | Smooth image deformation using landmark based deformation by means of Thin Plate Spline inspired by the implementation of Kitware (ITK). | Class | | Fiji |
|
Transform_Virtual_Stack_MT | Fiji plugin to transform sequences of images in a concurrent (multi-thread) way. | Class | register_virtual_stack | Fiji |
|
Transformation | Class to perform the transformation for bUnwarpJ: It stores the information about the bidirectional or unidirectional registration. | Class | bunwarpj | Fiji |
|
TransformationAttempt | | Class | landmarks | Fiji |
|
TransformationModel | | Class | spim.process.interestpointregistration | Fiji |
|
TransformationStep | | Class | ini.trakem2.display | Fiji |
|
TransformAwareBufferedImageOverlayRenderer | | Class | bdv.viewer.render | Fiji |
|
TransformAwareRenderTarget | | Interface | bdv.viewer.render | Fiji |
|
TransformedImage | | Class | vib | Fiji |
|
TransformedInterpolatedRealRandomAccess | | Class | spim.process.fusion.weights | Fiji |
|
TransformedRealRandomAccessibleInterval | | Class | spim.process.fusion.weights | Fiji |
|
TransformedSource | A Source that wraps another Source and allows to decorate it with an extra AffineTransform3D. | Class | bdv.tools.transformation | Fiji |
|
Transformer | This class implements static methods for transforming images and volumes. | Class | volume | Fiji |
|
TransformImages | | Class | vib.app.module | Fiji |
|
TransformInput | Fuse one portion of a paralell fusion, supports no weightsAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.deconvolution | Fiji |
|
TransformInputAndWeights | Fuse one portion of a paralell fusion, supports no weightsAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.deconvolution | Fiji |
|
TransformInverseGradientDescent | | Class | jitk.spline | Fiji |
|
TransformIO | This class provides simple IO for affine transforms. | Class | math3d | Fiji |
|
TransformMesh | | Class | mpicbg.trakem2.transform | Fiji |
|
TransformMeshMapping | Creates automatically cropped mappings and inverse mappings of images using a TransformMesh. | Class | mpicbg.trakem2.transform | Fiji |
|
TransformMeshMappingWithMasks | Specialized TransformMapping for Patches, that is, rendering the image, outside mask and mask in one go instead three. | Class | mpicbg.trakem2.transform | Fiji |
|
TransformUtils | | Class | mpicbg.util | Fiji |
|
TransformWeights | Fuse one portion of a paralell fusion, supports no weightsAuthor:Stephan Preibisch (stephan. | Class | spim.process.fusion.deconvolution | Fiji |
|
Translate | Translates an image using different interpolation schemes. | Class | imagescience.transform | Fiji |
|
TranslationAnimator | An animator that just executes a constant speed translation of the current viewpoint to a target location, keeping all other view parameters constant. | Class | bdv.viewer.animate | Fiji |
|
TranslationInvariantAffineModel3D | 3d-affine transformation models to be applied to points in 3d-space. | Class | mpicbg.pointdescriptor.model | Fiji |
|
TranslationInvariantFixedModel | This model just applies some other TranslationInvariantModel without computing anything. | Class | mpicbg.pointdescriptor.model | Fiji |
|
TranslationInvariantModel | This class is a subtle hint that Models which are used to fit AbstractPointDescriptors should be translation invariant. | Class | mpicbg.pointdescriptor.model | Fiji |
|
TranslationInvariantRigidModel2D | 2d-rigid transformation models to be applied to points in 2d-space. | Class | mpicbg.pointdescriptor.model | Fiji |
|
TranslationInvariantRigidModel3D | 3d-rigid transformation models to be applied to points in 3d-space. | Class | mpicbg.pointdescriptor.model | Fiji |
|
TranslationInvariantSimilarityModel3D | 3d-rigid transformation models to be applied to points in 3d-space. | Class | mpicbg.pointdescriptor.model | Fiji |
|
TranslationModel2D | | Class | mpicbg.trakem2.transform | Fiji |
|
TranslationModel2D | | Class | stitching.model | Fiji |
|
TranslationModel3D | | Class | mpicbg.trakem2.transform | Fiji |
|
TranslationModel3D | | Class | stitching.model | Fiji |
|
TranslationTile2D | | Class | mpicbg.trakem2.align | Fiji |
|
TransTypes | This pass translates Generic Java to conventional Java. | Class | com.sun.tools.javac.comp | Fiji |
|
Tree | Common interface for all nodes in an abstract syntax tree. | Class | com.sun.source.tree | Fiji |
|
Tree | A sequence of points ordered in a set of connected branches. | Class | ini.trakem2.display | Fiji |
|
TreeConnectorsView | List all connectors whose origins intersect with the given tree. | Class | ini.trakem2.display | Fiji |
|
TreeCopier | Creates a copy of a tree, using a given TreeMaker. | Class | com.sun.tools.javac.tree | Fiji |
|
TreeInfo | Utility class containing inspector methods for trees. | Class | com.sun.tools.javac.tree | Fiji |
|
Treeline | | Class | ini.trakem2.display | Fiji |
|
TreelineGraphEditor | | Class | treeline | Fiji |
|
TreeMaker | Factory class for trees. | Class | com.sun.tools.javac.tree | Fiji |
|
TreePath | A path of tree nodes, typically used to represent the sequence of ancestor nodes of a tree node up to the top level CompilationUnitTree node. | Class | com.sun.source.util | Fiji |
|
TreePathScanner | A TreeVisitor that visits all the child tree nodes, and provides support for maintaining a path for the parent nodes. | Class | com.sun.source.util | Fiji |
|
Trees | Bridges JSR 199, JSR 269, and the Tree API. | Class | com.sun.source.util | Fiji |
|
TreeScanner | A TreeVisitor that visits all the child tree nodes. | Class | com.sun.source.util | Fiji |
|
TreeScanner | A subclass of Tree. | Class | com.sun.tools.javac.tree | Fiji |
|
TreeTranslator | A subclass of Tree. | Class | com.sun.tools.javac.tree | Fiji |
|
TreeVisitor | A visitor of trees, in the style of the visitor design pattern. | Interface | com.sun.source.tree | Fiji |
|
Triangle | | Class | math3d | Fiji |
|
Triangle_Algorithm | | Class | | Fiji |
|
Triangulation | A Triangulation on vertices (generic type V). | Class | delaunay | Fiji |
|
Triangulator | | Interface | isosurface | Fiji |
|
TrimNotVisibleAction | | Class | fiji.plugin.trackmate.action | Fiji |
|
Triple | | Class | mpicbg.trakem2.util | Fiji |
|
TryTree | A tree node for a 'try' statement. | Interface | com.sun.source.tree | Fiji |
|
Tube | | Class | customnode | Fiji |
|
Tubeness_ | | Class | features | Fiji |
|
TubenessProcessor | | Class | features | Fiji |
|
TubularGeodesicsTracer | | Class | tracing | Fiji |
|
TurboReg_ | This class is the only one that is accessed directly by imageJ; it launches a modeless dialog and dies. | Class | | Fiji |
|
Turn | Rotates an image multiples of 90 degrees around its principal axes. | Class | imagescience.transform | Fiji |
|
TwinCursor | The TwinCursor moves over two images with respect to a mask. | Class | net.imglib2 | Fiji |
|
Two_Point_Correlation | | Class | | Fiji |
|
TwoOperandsAbstractFunction | | Class | fiji.expressionparser.function | Fiji |
|
TwoOperandsPixelBasedAbstractFunction | | Class | fiji.expressionparser.function | Fiji |
|
TwoValues | | Class | distance | Fiji |
|
Type | This class represents Java types. | Class | com.sun.tools.javac.code | Fiji |
|
Type | The Type class is responsible for computing. | Interface | mpicbg.imglib.type | Fiji |
|
TypeCastTree | A tree node for a type cast expression. | Interface | com.sun.source.tree | Fiji |
|
TypeConverter | | Class | mpicbg.imglib.type | Fiji |
|
TypedBasicImgLoader | | Interface | mpicbg.spim.data.generic.sequence | Fiji |
|
TypedHashMap | An extended HashMap that throws UnsupportedOperationException for calls to HashMap. | Class | ini.trakem2.utils | Fiji |
|
TypeElement | Represents a class or interface program element. | Interface | javax.lang.model.element | Fiji |
|
TypeImpl | | Class | mpicbg.imglib.type | Fiji |
|
TypeKind | The kind of a type mirror. | Class | javax.lang.model.type | Fiji |
|
TypeKindVisitor6 | A visitor of types based on their kind with default behavior appropriate for the RELEASE_6 source version. | Class | javax.lang.model.util | Fiji |
|
TypeMirror | Represents a type in the Java programming language. | Interface | javax.lang.model.type | Fiji |
|
TypeParameterElement | Represents a formal type parameter of a generic class, interface, method, or constructor element. | Interface | javax.lang.model.element | Fiji |
|
TypeParameterTree | A tree node for a type parameter. | Interface | com.sun.source.tree | Fiji |
|
Types | Utility class containing various operations on types. | Class | com.sun.tools.javac.code | Fiji |
|
Types | Utility methods for operating on types. | Interface | javax.lang.model.util | Fiji |
|
TypeTags | An interface for type tag values, which distinguish between different This is NOT part of any supported API. | Class | com.sun.tools.javac.code | Fiji |
|
TypeVariable | Represents a type variable. | Interface | javax.lang.model.type | Fiji |
|
TypeVisitor | A visitor of types, in the style of the visitor design pattern. | Interface | javax.lang.model.type | Fiji |
|
U3DExporter | http://www. | Class | customnode.u3d | Fiji |
|
UI | User interface abstraction of the ImageJ Updater adapter. | Interface | fiji.updater | Fiji |
|
UIAdapter | | Interface | ij3d | Fiji |
|
UnaryOperation | | Class | script.imglib.math.fn | Fiji |
|
UnaryOperator | | Interface | imglib.ops.operator | Fiji |
|
UnaryOperatorFunction | | Class | imglib.ops.function.p1 | Fiji |
|
UnaryTree | A tree node for postfix and unary expressions. | Interface | com.sun.source.tree | Fiji |
|
UniformGenerator | Uniform random number generator. | Class | imagescience.random | Fiji |
|
UnivariateFunction | interface for a function of one variableAuthor:Korbinian Strimmer | Interface | pal.math | Fiji |
|
UnivariateMinimum | minimization of a real-valued function of one variable without using derivatives. | Class | pal.math | Fiji |
|
UniverseListener | | Interface | ij3d | Fiji |
|
UniverseSettings | | Class | ij3d | Fiji |
|
UniverseSynchronizer | | Class | ij3d | Fiji |
|
UnknownAnnotationValueException | Indicates that an unknown kind of annotation value was encountered. | Class | javax.lang.model.element | Fiji |
|
UnknownElementException | Indicates that an unknown kind of element was encountered. | Class | javax.lang.model.element | Fiji |
|
UnknownTypeException | Indicates that an unknown kind of type was encountered. | Class | javax.lang.model.type | Fiji |
|
Unpack_To_PNG | | Class | stacks | Fiji |
|
UnsetPixel | | Class | levelsets.filter | Fiji |
|
Unsigned12BitType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
UnsignedByteType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
UnsignedIntType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
UnsignedShortType | | Class | mpicbg.imglib.type.numeric.integer | Fiji |
|
Unsparse3DByteArray | | Class | adt | Fiji |
|
UnwarpJ_ | | Class | | Fiji |
|
Updater | | Class | fiji.updater | Fiji |
|
Updater | A plugin for updating the Bio-Formats plugins. | Class | loci.plugins | Fiji |
|
UpgradeDialog | Bio-Formats Importer upgrade checker dialog box. | Class | loci.plugins.in | Fiji |
|
Upload_Image_To_Wiki | | Class | fiji | Fiji |
|
UptodateCheck | | Class | fiji.updater | Fiji |
|
UrnModel | class for drawing numbers from an urn with and without laying back | Class | pal.math | Fiji |
|
User_Plugins | A class to find user plugins, i. | Class | fiji | Fiji |
|
USHORTPaint | | Class | ini.trakem2.display.paint | Fiji |
|
Util | | Class | bdv.img.hdf5 | Fiji |
|
Util | | Class | histogram2 | Fiji |
|
Util | | Class | ini.trakem2.vector | Fiji |
|
Util | | Class | mpicbg.imglib.util | Fiji |
|
Util | | Class | mpicbg.panorama | Fiji |
|
Util | | Class | mpicbg.trakem2.align | Fiji |
|
Util | | Class | script.imglib.math.fn | Fiji |
|
Utils | | Class | edu.utexas.clm.reconstructreader | Fiji |
|
Utils | Utils class: stores generic widely used methods. | Class | ini.trakem2.utils | Fiji |
|
Utils | Util class made of static methods, meant to simplify the writing of special cursors. | Class | mpicbg.imglib.cursor.special | Fiji |
|
Utils | | Class | oldsegmenters | Fiji |
|
Utils | Collection of auxiliary image processing methods used by the SioxSegmentator mainly for postprocessing. | Class | org.siox.util | Fiji |
|
V3dRawImageStream | | Class | org.janelia.vaa3d.reader | Fiji |
|
Vaa3d_Reader | Vaa3d_Reader class is a Fiji/ImageJ plugin for loading . | Class | org.janelia.vaa3d.reader | Fiji |
|
Vaa3d_Writer | | Class | | Fiji |
|
Vaa3dPbdToRaw | | Class | org.janelia.vaa3d.reader | Fiji |
|
ValueGreaterThan | | Class | imglib.ops.condition | Fiji |
|
ValueLessThan | | Class | imglib.ops.condition | Fiji |
|
ValueResult | A small structure to keep decimal places information with numbers along with a name or a simple named text. | Class | results | Fiji |
|
ValueToNoise | | Class | ini.trakem2.imaging.filters | Fiji |
|
VariableElement | Represents a field, enum constant, method or constructor parameter, local variable, or exception parameter. | Interface | javax.lang.model.element | Fiji |
|
VariableTree | A tree node for a variable declaration. | Interface | com.sun.source.tree | Fiji |
|
Variance | | Class | edf | Fiji |
|
Vector | | Class | mpicbg.imglib.cursor.vector | Fiji |
|
Vector1d | | Class | mpicbg.imglib.cursor.vector | Fiji |
|
Vector2d | | Class | mpicbg.imglib.cursor.vector | Fiji |
|
Vector3 | | Class | ini.trakem2.utils | Fiji |
|
Vector3d | | Class | mpicbg.imglib.cursor.vector | Fiji |
|
Vector4d | | Class | mpicbg.imglib.cursor.vector | Fiji |
|
VectorData | An interface to represent Displayable objects that are not images. | Interface | ini.trakem2.display | Fiji |
|
VectorDataTransform | | Class | ini.trakem2.display | Fiji |
|
VectorString | | Interface | ini.trakem2.vector | Fiji |
|
VectorString2D | | Class | ini.trakem2.vector | Fiji |
|
VectorString3D | | Class | ini.trakem2.vector | Fiji |
|
Version | A utility class to deal with version numbers. | Class | fiji.plugin.trackmate.util | Fiji |
|
Version | | Class | mpicbg.spim.data | Fiji |
|
Version | | Class | spim | Fiji |
|
VersionChecker | Compares version strings. | Class | imagescience.utility | Fiji |
|
Vertex | A class to express a Vertex in a graph. | Class | ini.trakem2.analysis | Fiji |
|
Vertex | This class represents a vertex or node in a graph. | Class | sc.fiji.analyzeSkeleton | Fiji |
|
VIB | | Class | vib | Fiji |
|
VIB_Protocol | | Class | | Fiji |
|
VideoStack | | Class | video | Fiji |
|
View5D | | Class | view5d | Fiji |
|
View5D_ | | Class | view5d | Fiji |
|
ViewAdjuster | | Class | ij3d | Fiji |
|
ViewChoiceDescriptor | | Class | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
ViewDataBeads | | Class | mpicbg.spim.registration | Fiji |
|
ViewDescription | | Class | mpicbg.spim.data.sequence | Fiji |
|
Viewer3dFunctions | | Class | mpicbg.spim.vis3d | Fiji |
|
ViewerFrame | A JFrame containing a ViewerPanel and associated InputActionBindings. | Class | bdv.viewer | Fiji |
|
ViewerImgLoader | | Interface | bdv | Fiji |
|
ViewerOptions | Optional parameters for ViewerPanel. | Class | bdv.viewer | Fiji |
|
ViewerPanel | A JPanel for viewing multiple of Sources. | Class | bdv.viewer | Fiji |
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ViewErrorPairWise | | Class | mpicbg.spim.registration.bead.error | Fiji |
|
ViewErrorStatistics | This class handles View-specific error analysis. | Class | mpicbg.spim.registration.bead.error | Fiji |
|
ViewerSetupImgLoader | | Interface | bdv | Fiji |
|
ViewerState | Description of everything required to render the current image, such as the current timepoint, the visible and current sources and groups respectively, | Class | bdv.viewer.state | Fiji |
|
ViewExplorerSetable | | Interface | spim.fiji.spimdata.explorer.popup | Fiji |
|
ViewFactory | | Interface | fiji.plugin.trackmate.visualization | Fiji |
|
ViewId | Identifies a particular view as a combination of a TimePoint id and aAuthor:Tobias Pietzsch Class | mpicbg.spim.data.sequence | Fiji | |
|
ViewIdUtils | | Class | mpicbg.spim.data.sequence | Fiji |
|
ViewInterestPointLists | Maps from a String label to a list of interest points for a specific viewidAuthor:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
|
ViewInterestPoints | A class that organizes all interest point detections of all ViewDescriptions (which extend ViewId)Author:Stephan Preibisch (stephan. | Class | spim.fiji.spimdata.interestpoints | Fiji |
|
ViewLevelId | | Class | bdv.img.hdf5 | Fiji |
|
ViewPlatformTransformer | This class is a helper class which implements some functions for transforming the view part of the scene graph. | Class | ij3d.behaviors | Fiji |
|
ViewProvider | | Class | fiji.plugin.trackmate.providers | Fiji |
|
ViewRegistration | | Class | mpicbg.spim.data.registration | Fiji |
|
ViewRegistrations | Only contains a Map from ViewId to ViewRegistrationAuthor:Tobias Pietzsch Class | mpicbg.spim.data.registration | Fiji | |
|
ViewRegistrationsUtils | | Class | mpicbg.spim.data.registration | Fiji |
|
ViewSetup | A collection of parameters describing the setup for a particular stack coming from a SPIM microscope (angle, illumination direction, etc). | Class | mpicbg.spim.data.sequence | Fiji |
|
ViewSetupAttributeIo | | Class | mpicbg.spim.data.generic.base | Fiji |
|
ViewSetupAttributes | | Class | mpicbg.spim.data.generic.base | Fiji |
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ViewSetupExplorer | | Class | spim.fiji.spimdata.explorer | Fiji |
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ViewSetupExplorerInfoBox | | Class | spim.fiji.spimdata.explorer | Fiji |
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ViewSetupExplorerPanel | | Class | spim.fiji.spimdata.explorer | Fiji |
|
ViewSetups | Helper methods for dealing with ViewSetup collections. | Class | mpicbg.spim.data.sequence | Fiji |
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ViewSetupTableModel | | Class | spim.fiji.spimdata.explorer | Fiji |
|
ViewSetupUtils | | Class | spim.fiji.spimdata | Fiji |
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ViewSetupWrapper | A copy of a ViewSetup with another id. | Class | bdv.ij.export | Fiji |
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ViewStructure | This class stores the links to all Views and initializes the View-dependent error statisticsAuthor:Stephan Preibisch | Class | mpicbg.spim.registration | Fiji |
|
ViewTransform | | Interface | mpicbg.spim.data.registration | Fiji |
|
ViewTransformAffine | | Class | mpicbg.spim.data.registration | Fiji |
|
ViewTransformGeneric | | Interface | mpicbg.spim.data.registration | Fiji |
|
ViewUtils | A collection of static utilities related to TrackMateModelViews. | Class | fiji.plugin.trackmate.visualization | Fiji |
|
Virtual_Image5D_Opener | | Class | | Fiji |
|
VirtualImagePlus | Extension of ImagePlus that supports Bio-Formats-driven virtual stacks. | Class | loci.plugins.util | Fiji |
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VirtualPointNode | | Class | mpicbg.pointdescriptor.test | Fiji |
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VirtualReader | | Class | loci.plugins.util | Fiji |
|
VirtualStackImageLoader | ImageLoader backed by a ImagePlus. | Class | bdv.img.virtualstack | Fiji |
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VirtualStackVolatileARGBArrayLoader | | Class | bdv.img.virtualstack | Fiji |
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VirtualStackVolatileByteArrayLoader | | Class | bdv.img.virtualstack | Fiji |
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VirtualStackVolatileFloatArrayLoader | | Class | bdv.img.virtualstack | Fiji |
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VirtualStackVolatileShortArrayLoader | | Class | bdv.img.virtualstack | Fiji |
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VisibilityAndGrouping | Manage visibility and currentness of sources and groups, as well as grouping of sources, and display mode. | Class | bdv.viewer | Fiji |
|
VisibilityAndGroupingDialog | | Class | bdv.tools | Fiji |
|
Visual_Grep | | Class | | Fiji |
|
VisualizationFunctions | | Class | mpicbg.spim.vis3d | Fiji |
|
VisualizationSketchTikZ | | Class | mpicbg.spim.vis3d | Fiji |
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Visualize_Detections | | Class | spim.fiji.plugin | Fiji |
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VisualizeBeads | | Class | mpicbg.spim.vis3d | Fiji |
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VisualizeDetectionsPopup | | Class | spim.fiji.spimdata.explorer.popup | Fiji |
|
VJAlphaColor | This class is the abstract type for an alphacolor, i. | Class | VolumeJ | Fiji |
|
VJBackprojection | VJBackprojection. | Class | VolumeJ | Fiji |
|
VJBinaryShell | For patenting and copyrighting reasons all Javadoc comments have been removed. | Class | VolumeJ | Fiji |
|
VJCell | For patenting and copyrighting reasons all Javadoc comments have been removed. | Class | VolumeJ | Fiji |
|
VJClassifier | This class is the superclass for all classifiers. | Class | VolumeJ | Fiji |
|
VJClassifierGradientCT | This class implements the Gradient classification function with indexing for CT scans optimized. | Class | VolumeJ | Fiji |
|
VJClassifierInteger | This class is the superclass for all VJ classifier that work on Integer voxel values. | Class | VolumeJ | Fiji |
|
VJClassifierIsosurface | This class implements the classifier for colored isosurface rendering. | Class | VolumeJ | Fiji |
|
VJClassifierIsosurfaceGrayscale | This class implements the classifier for a grayscale isosurface renderer. | Class | VolumeJ | Fiji |
|
VJClassifierLevoy | This class implements the Levoy tent classification function with indexing. | Class | VolumeJ | Fiji |
|
VJClassifierLevoyCueing | This class implements the Levoy tent classification function with depth cueing and indexing. | Class | VolumeJ | Fiji |
|
VJClassifierLinear | This class implements a linear ramp classification function with indexing. | Class | VolumeJ | Fiji |
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VJClassifierLNoIndex | This class implements the Levoy tent classification function without indexing. | Class | VolumeJ | Fiji |
|
VJClassifierLNotIndex0 | This class implements the Levoy tent classification function with indexing. | Class | VolumeJ | Fiji |
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VJClassifierRGB | This class implements a classifier for RGB vector volumes. | Class | VolumeJ | Fiji |
|
VJClassifiers | This class is a class whose only purpose is to contain all VJClassifier class definitions. | Class | VolumeJ | Fiji |
|
VJClassifierValue | This class implements a classification function on the voxel value only. | Class | VolumeJ | Fiji |
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VJCutout | VJCutout. | Class | VolumeJ | Fiji |
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VJGradient | This is a class that defines the gradient of a voxel. | Class | VolumeJ | Fiji |
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VJInterpolator | This class is the abstract class for all volume interpolators and defines the methods for each of these classes. | Class | VolumeJ | Fiji |
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VJIsosurfaceRender | For patenting and copyrighting reasons all informative Javadoc comments have been removed. | Class | VolumeJ | Fiji |
|
VJLight | This class implements a volume rendering light, and adds to methods to manipulate the light. | Class | VolumeJ | Fiji |
|
VJMatrix | This class implements a transformation matrix and 3D transformation methods on it. | Class | VolumeJ | Fiji |
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VJNearestNeighbor | This class is the standard interpolator and implements nearest neighbor interpolation and interpolation of gradients. | Class | VolumeJ | Fiji |
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VJOutlineShader | VJOutlineShader implements outline shading. | Class | VolumeJ | Fiji |
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VJPhongShader | VJShader implements shading in a Phong illumination model, for ambient and diffuse shading only. | Class | VolumeJ | Fiji |
|
VJPlane | VJPlane. | Class | VolumeJ | Fiji |
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VJProjection | This class is a set of projections of an object. | Class | VolumeJ | Fiji |
|
VJReconstructor | VJReconstructor reconstructs volumes in an ImageJ stack of any anisotropy along any axis. | Class | VolumeJ | Fiji |
|
VJRender | VJRender class. | Class | VolumeJ | Fiji |
|
VJRenderer | VJRenderer class implements the context and support methods for Volume Rendering. | Class | VolumeJ | Fiji |
|
VJRenderView | VJRenderView class implements a shell for rendering one or more views of a volume with a given renderer and volume. | Class | VolumeJ | Fiji |
|
VJRenderViewCine | This subclass of VJRenderView implements cine mode rendering. | Class | VolumeJ | Fiji |
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VJRenderViewInteractive | VJRenderViewInteractive implements a shell for interactively modifying the view (by rotating etc). | Class | VolumeJ | Fiji |
|
VJRenderViewSingle | VJRenderView class implements a shell for viewing the one or more rendering of a volume with a given renderer. | Class | VolumeJ | Fiji |
|
VJRenderViewStereo | VJRenderViewStereo is a subclass of VJRenderView that implements the shell for rendering two stereo views for viewing with a stereo viewer. | Class | VolumeJ | Fiji |
|
VJrgbValue | VJrgbValue. | Class | VolumeJ | Fiji |
|
VJShade | VJShade. | Class | VolumeJ | Fiji |
|
VJShader | VJShader is the default null shader. | Class | VolumeJ | Fiji |
|
VJShape | | Class | VolumeJ | Fiji |
|
VJSplineInterpolator | This class implements cubic spline interpolation and interpolation of gradients. | Class | VolumeJ | Fiji |
|
VJSurfaceJ | This class offers SurfaceJ, a surface plotting plugin based on VJ. | Class | VolumeJ | Fiji |
|
VJSurfacePlotShell | This class implements utility for surface plotting. | Class | VolumeJ | Fiji |
|
VJThresholdedVolume | This class creates thresholded (binary) volumes of any type of Volume. | Class | VolumeJ | Fiji |
|
VJTrilinear | This class implements trilinear voxel interpolation and voxel gradient interpolation. | Class | VolumeJ | Fiji |
|
VJUserInterface | This class links the VJ classes to the ImageJ interface. | Class | VolumeJ | Fiji |
|
VJValue | Contains a voxel value intended to be rendered, which may be int, float or vector etc. | Class | VolumeJ | Fiji |
|
VJValueHSB | Contains an RGB volume voxel value in HSB format. | Class | VolumeJ | Fiji |
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VJViewerCanvas | This class is an interactive rendering viewer. | Class | VolumeJ | Fiji |
|
VJViewspaceRender | VJViewspaceRender class. | Class | VolumeJ | Fiji |
|
VJViewspaceUtil | VJViewspaceUtil implements viewspace utility methods, that can be used to relate a volume in a transformation matrix to the coordinates of that volume in viewspace. | Class | VolumeJ | Fiji |
|
VJVoxelLoc | This class defines a voxel location for interpolation and rendering. | Class | VolumeJ | Fiji |
|
VJZBuffer | Copyright (c) 2001-2002, Michael Abramoff. | Class | VolumeJ | Fiji |
|
VoidConverter | | Class | mpicbg.imglib.function | Fiji |
|
VolatileAccess | A basic type access that can contain valid or invalid data. | Interface | net.imglib2.img.basictypeaccess.volatiles | Fiji |
|
VolatileARGBType | A Volatile variant of UnsignedShortType. | Class | net.imglib2.type.volatiles | Fiji |
|
VolatileByteAccess | | Interface | net.imglib2.img.basictypeaccess.volatiles | Fiji |
|
VolatileByteArray | A ByteArray with an AbstractVolatileArray. | Class | net.imglib2.img.basictypeaccess.volatiles.array | Fiji |
|
VolatileCell | | Class | bdv.img.cache | Fiji |
|
VolatileFloatAccess | | Interface | net.imglib2.img.basictypeaccess.volatiles | Fiji |
|
VolatileFloatArray | A FloatArray with an AbstractVolatileArray. | Class | net.imglib2.img.basictypeaccess.volatiles.array | Fiji |
|
VolatileFloatType | | Class | net.imglib2.type.volatiles | Fiji |
|
VolatileGlobalCellCache | | Class | bdv.img.cache | Fiji |
|
VolatileHierarchyProjector | VolatileProjector for a hierarchy of Volatile inputs. | Class | bdv.viewer.render | Fiji |
|
VolatileImgCells | | Class | bdv.img.cache | Fiji |
|
VolatileIntAccess | | Interface | net.imglib2.img.basictypeaccess.volatiles | Fiji |
|
VolatileIntArray | A IntArray with an AbstractVolatileArray. | Class | net.imglib2.img.basictypeaccess.volatiles.array | Fiji |
|
VolatileProjector | | Interface | bdv.viewer.render | Fiji |
|
VolatileShortAccess | | Interface | net.imglib2.img.basictypeaccess.volatiles | Fiji |
|
VolatileShortArray | A ShortArray with an AbstractVolatileArray. | Class | net.imglib2.img.basictypeaccess.volatiles.array | Fiji |
|
VolatileSpimSource | | Class | bdv | Fiji |
|
VolatileUnsignedByteType | A Volatile variant of UnsignedByteType. | Class | net.imglib2.type.volatiles | Fiji |
|
VolatileUnsignedShortType | A Volatile variant of UnsignedShortType. | Class | net.imglib2.type.volatiles | Fiji |
|
VoltexGroup | This class extends ContentNode to display a Content as a Volume Rendering. | Class | voltex | Fiji |
|
VoltexVolume | This class encapsulates an image stack and provides various methods for retrieving data. | Class | voltex | Fiji |
|
Volume | | Class | fiji.plugin.volumeviewer | Fiji |
|
Volume | This class encapsulates an image stack and provides various methods for retrieving data. | Class | ij3d | Fiji |
|
Volume | This is an abstract super-class to implement volumes. | Class | volume | Fiji |
|
Volume_Calculator | This is the Volume_Calculator ImageJ/Fiji plugin. | Class | volumeCalculator | Fiji |
|
Volume_Editor | | Class | textureByRef | Fiji |
|
Volume_Reconstructor_ | Volume Reconstructor is a plugin for ImageJ that reconstructs volumes. | Class | | Fiji |
|
Volume_Viewer | | Class | fiji.plugin.volumeviewer | Fiji |
|
VolumeFloat | This class implements float volumes and operations including convolutions on it. | Class | volume | Fiji |
|
VolumeInteger | This class implements int volumes and operations including convolutions on it. | Class | volume | Fiji |
|
VolumeIO | This is a class that implements reading and writing on float volumes. | Class | volume | Fiji |
|
VolumeJ_ | This class interfaces the VolumeJ package to a ImageJ plugin. | Class | | Fiji |
|
VolumeOctree | | Class | octree | Fiji |
|
VolumeRenderer | This class is the main class for creating a volume rendering. | Class | voltex | Fiji |
|
VolumeRGB | This class implements RGB vector volumes. | Class | volume | Fiji |
|
Volumes | An instance of Volumes is used to keep track of the volume values accumulated by the Volume_Calculator plugin. | Class | volumeCalculator | Fiji |
|
VolumeShort | This class implements short volumes and operations including convolutions on it. | Class | volume | Fiji |
|
VolumesPanel | | Class | volumeCalculator | Fiji |
|
VoxelDimensions | | Interface | mpicbg.spim.data.sequence | Fiji |
|
VTKResource | Resource class for working with the Visualization Toolkit (VTK) in the current environment. | Class | imagescience.utility | Fiji |
|
WaitForNextFrameBehavior | | Class | ij3d.behaviors | Fiji |
|
WalkingAverage_ | Performs a walking average on a stack. | Class | | Fiji |
|
Warner | An interface to support optional warnings, needed for support of unchecked conversions and unchecked casts. | Class | com.sun.tools.javac.util | Fiji |
|
Warning | A class representing a warning, combining a short and a long message. | Class | results | Fiji |
|
Watershed | Watershed algorithms. | Class | mpicbg.imglib.algorithm.labeling | Fiji |
|
Watershed | | Class | utils | Fiji |
|
Wave2Color | Converts wavelengths of light to corresponding RGBA color values. | Class | imagescience.color | Fiji |
|
WavefrontExporter | | Class | customnode | Fiji |
|
WavefrontLoader | | Class | customnode | Fiji |
|
WaveSpline | This class make a Spline wavelets transformation and its inverse. | Class | wavelets | Fiji |
|
WaveSplineFilter | This class generates the Spline wavelets filters. | Class | wavelets | Fiji |
|
WeightedAverageFusion | | Class | spim.process.fusion.weightedavg | Fiji |
|
WeightNormalizer | | Class | spim.process.fusion.deconvolution | Fiji |
|
WhileLoopTree | A tree node for a 'while' loop statement. | Interface | com.sun.source.tree | Fiji |
|
Wiki_Editor | | Class | fiji | Fiji |
|
WildcardTree | A tree node for a wildcard type argument. | Interface | com.sun.source.tree | Fiji |
|
WildcardType | Represents a wildcard type argument. | Interface | javax.lang.model.type | Fiji |
|
WindowHelpers | | Class | util | Fiji |
|
WindowTools | Utility methods for managing ImageJ dialogs and windows. | Class | loci.plugins.util | Fiji |
|
WizardPanelDescriptor | A base descriptor class used to reference a Component panel for the Wizard, as well as provide general rules as to how the panel should behave. | Interface | fiji.plugin.trackmate.gui.descriptors | Fiji |
|
Worker | | Class | ini.trakem2.utils | Fiji |
|
WrapBasicImgLoader | | Class | bdv.spimdata | Fiji |
|
WrapLayout | FlowLayout subclass that fully supports wrapping of components. | Class | fiji.plugin.trackmate.gui.panels | Fiji |
|
WrappingJavaFileManager | Wraps all calls to a given file manager. | Class | com.sun.tools.javac.api | Fiji |
|
WritableVirtualStack | This class represents an array of disk-resident images. | Class | video2 | Fiji |
|
WriteSequenceToHdf5 | Create a hdf5 files containing image data from all views and all timepoints in a chunked, mipmaped representation. | Class | bdv.export | Fiji |
|
WriteXML | | Class | | Fiji |
|
XCErrorAdapter | | Class | edu.utexas.clm.archipelago.util | Fiji |
|
XfmUtils | Class with helper methods for debugging and testing the this thin plate spline implementation. | Class | jitk.spline | Fiji |
|
XMLFileFilter | Accepts . | Class | ini.trakem2.io | Fiji |
|
XMLFunctions | | Class | mpicbg.spim.io | Fiji |
|
XMLFunctions | | Class | util | Fiji |
|
XmlHelpers | | Class | mpicbg.spim.data | Fiji |
|
XmlIoAbstractSequenceDescription | | Class | mpicbg.spim.data.generic.sequence | Fiji |
|
XmlIoAbstractSpimData | | Class | mpicbg.spim.data.generic | Fiji |
|
XmlIoAngle | | Class | mpicbg.spim.data.sequence | Fiji |
|
XmlIoBasicImgLoader | | Interface | mpicbg.spim.data.generic.sequence | Fiji |
|
XmlIoBasicViewSetup | | Class | mpicbg.spim.data.generic.sequence | Fiji |
|
XmlIoBasicViewSetups | Writes and reads collections of a specific BasicViewSetup subclass as an XML section. | Class | mpicbg.spim.data.generic.sequence | Fiji |
|
XmlIoBoundingBoxes | | Class | spim.fiji.spimdata.boundingbox | Fiji |
|
XmlIoCatmaidImageLoader | | Class | bdv.img.catmaid | Fiji |
|
XmlIoChannel | | Class | mpicbg.spim.data.sequence | Fiji |
|
XmlIoDHMImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
XmlIoEntity | Writes and reads objects of a specific subclass of Entity as XML When reading/writing an object, XmlIoEntity takes care of the | Class | mpicbg.spim.data.generic.base | Fiji |
|
XmlIoEntityMap | Writes and reads collections of a specific Entity subclass as an XML section. | Class | mpicbg.spim.data.generic.base | Fiji |
|
XmlIoHdf5ImageLoader | | Class | bdv.img.hdf5 | Fiji |
|
XmlIoIllumination | | Class | mpicbg.spim.data.sequence | Fiji |
|
XmlIoLightSheetZ1ImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
XmlIoMicroManagerImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
XmlIoMissingViews | | Class | mpicbg.spim.data.sequence | Fiji |
|
XmlIoNamedEntity | XmlIoEntity for NamedEntity that also handles <>Author:Tobias Pietzsch Class | mpicbg.spim.data.generic.base | Fiji | |
|
XmlIoOpenConnectomeImageLoader | | Class | bdv.img.openconnectome | Fiji |
|
XmlIoRemoteImageLoader | | Class | bdv.img.remote | Fiji |
|
XmlIoSequenceDescription | | Class | mpicbg.spim.data.sequence | Fiji |
|
XmlIoSingleton | Writes and reads objects of a specific class as XML elements. | Class | mpicbg.spim.data.generic.base | Fiji |
|
XmlIoSpimData | | Class | mpicbg.spim.data | Fiji |
|
XmlIoSpimData2 | | Class | spim.fiji.spimdata | Fiji |
|
XmlIoSpimDataMinimal | | Class | bdv.spimdata | Fiji |
|
XmlIoSpimDataMinimalLegacy | | Class | bdv.spimdata.legacy | Fiji |
|
XmlIoStackImgLoader | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
XmlIoStackImgLoaderIJ | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
XmlIoStackImgLoaderLOCI | | Class | spim.fiji.spimdata.imgloaders | Fiji |
|
XmlIoTimePoints | | Class | mpicbg.spim.data.sequence | Fiji |
|
XmlIoTransformedSources | | Class | bdv.tools.transformation | Fiji |
|
XmlIoViewerState | | Class | bdv.viewer.state | Fiji |
|
XmlIoViewInterestPoints | | Class | spim.fiji.spimdata.interestpoints | Fiji |
|
XmlIoViewRegistration | | Class | mpicbg.spim.data.registration | Fiji |
|
XmlIoViewRegistrations | | Class | mpicbg.spim.data.registration | Fiji |
|
XmlIoViewSetups | | Class | mpicbg.spim.data.sequence | Fiji |
|
XmlIoViewTransform | | Class | mpicbg.spim.data.registration | Fiji |
|
XmlKeys | Definition of tag and attribute names. | Class | mpicbg.spim.data | Fiji |
|
XmlKeysBoundingBox | | Class | spim.fiji.spimdata.boundingbox | Fiji |
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XmlKeysInterestPoints | | Class | spim.fiji.spimdata.interestpoints | Fiji |
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XMLOptions | | Class | ini.trakem2.persistence | Fiji |
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XMLReader | | Class | spimopener | Fiji |
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XMLTIFFImgTitler | | Class | spim.process.fusion.export | Fiji |
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Xor | | Class | imglib.ops.operator.binary | Fiji |
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Xor | | Class | script.imglib.math | Fiji |
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XorConstant | | Class | imglib.ops.operator.unary | Fiji |
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XPM_Writer | | Class | io | Fiji |
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XYEdgeRenderer | | Class | fiji.plugin.trackmate.util | Fiji |
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XYEdgeSeries | | Class | fiji.plugin.trackmate.util | Fiji |
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XYEdgeSeriesCollection | | Class | fiji.plugin.trackmate.util | Fiji |
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XYTextSimpleAnnotation | | Class | org.jfree.chart.annotations | Fiji |
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YesNoDialog | A modal dialog box with a one line message and "Yes" and "No" buttons. | Class | ini.trakem2.display | Fiji |
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z_Image5D_test | | Class | | Fiji |
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Z_Project | | Class | | Fiji |
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ZDisplayable | For Pipes and other objects that must be shown in all Layers of a LayerSet. | Class | ini.trakem2.display | Fiji |
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ZeroCrosser | Detects zero-crossings in images. | Class | imagescience.segment | Fiji |
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ZipArchive | This is NOT part of any supported API. | Class | com.sun.tools.javac.file | Fiji |
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ZipFileIndex | This class implements building of index of a zip archive and access to it's context. | Class | com.sun.tools.javac.file | Fiji |
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ZipFileIndexArchive | This is NOT part of any supported API. | Class | com.sun.tools.javac.file | Fiji |
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ZipPackager | | Class | fiji.packaging | Fiji |
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ZLibAnalyzer | | Class | fiji | Fiji |
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_3D_objects_counter | | Class | | Fiji |
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_3D_OC_Options | | Class | | Fiji |