| Name | Description | Type | Package | Framework |
| AlignHorizontalAction | See Also:Serialized FormFields inherited from class javax. | Class | cytoscape.actions | CytoScape |
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| AlignVerticalAction | See Also:Serialized FormFields inherited from class javax. | Class | cytoscape.actions | CytoScape |
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| AlphabeticalSelectionAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| AnimatedLayoutAction | See Also:Serialized FormFields inherited from class javax. | Class | cytoscape.actions | CytoScape |
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| ApplyLayoutAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ApplyVisualStyleAction | Apply Visual Style for a set of selected networks. | Class | cytoscape.actions | CytoScape |
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| ArrangeAction | | Class | cytoscape.actions | CytoScape |
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| BackgroundColorAction | Prompts User for New Background Color. | Class | cytoscape.actions | CytoScape |
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| BendSelectedEdgesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| BirdsEyeViewAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| BookmarkAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| CheckBoxFileChooser | | Class | cytoscape.actions | CytoScape |
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| CloneGraphInNewWindowAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| CreateNetworkViewAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| CytoPanelAction | | Class | cytoscape.actions | CytoScape |
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| DeleteAction | action for deleting selected Cytoscape nodes and edgesVersion:1. | Class | cytoscape.actions | CytoScape |
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| DeselectAllAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| DeSelectAllEdgesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| DeSelectAllNodesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| DestroyNetworkAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| DestroyNetworkViewAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| EdgeManipulationAction | See Also:Serialized FormFields inherited from class javax. | Class | cytoscape.actions | CytoScape |
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| ExitAction | | Class | cytoscape.actions | CytoScape |
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| ExpFileChooser | adds a JCheckBox at the bottom of the chooser, asking whether to copy expression data to attributes. | Class | cytoscape.actions | CytoScape |
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| ExportAction | | Class | cytoscape.actions | CytoScape |
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| ExportAsGMLAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ExportAsGraphicsAction | Action for exporting a network view to bitmap or vector graphics. | Class | cytoscape.actions | CytoScape |
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| ExportAsInteractionsAction | write out the current graph to the specified file, using the standard interactions format: nodeA edgeType nodeB. | Class | cytoscape.actions | CytoScape |
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| ExportAsXGMMLAction | This action is for exporting network and attributes in XGMML file. | Class | cytoscape.actions | CytoScape |
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| ExportEdgeAttributesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ExportNetworksAsNNFAction | This action is for exporting network and attributes in XGMML file. | Class | cytoscape.actions | CytoScape |
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| ExportNodeAttributesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ExportVizmapAction | Export visual styles as a vizmap. | Class | cytoscape.actions | CytoScape |
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| FitContentAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| GinyUtils | Utility operations for selection and hiding/unhiding nodes and edges in a Giny GraphView. | Class | cytoscape.actions | CytoScape |
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| GraphObjectSelectionAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| HelpAboutAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| HelpContactHelpDeskAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| HelpContentsAction | Really just a wrapper for the CSH. | Class | cytoscape.actions | CytoScape |
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| HideSelectedAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| HideSelectedEdgesAction | | Class | cytoscape.actions | CytoScape |
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| HideSelectedNodesAction | | Class | cytoscape.actions | CytoScape |
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| ImportEdgeAttributesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ImportExpressionMatrixAction | User has requested loading of an Expression Matrix File. | Class | cytoscape.actions | CytoScape |
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| ImportGraphFileAction | Imports a graph of arbitrary type. | Class | cytoscape.actions | CytoScape |
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| ImportNodeAttributesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ImportVizmapAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| InvertSelectedEdgesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| InvertSelectedNodesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ListFromFileSelectionAction | Select nodes from a text list of node IDs. | Class | cytoscape.actions | CytoScape |
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| LoadNetworkTask | Task to load a new network. | Class | cytoscape.actions | CytoScape |
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| LoggerAction | Created by IntelliJ IDEA. | Class | cytoscape.actions | CytoScape |
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| MemoryUsageAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| NewNetworkAction | creates a new network and associates an editor with itVersion:1. | Class | cytoscape.actions | CytoScape |
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| NewSessionAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| NewWindowSelectedNodesEdgesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| NewWindowSelectedNodesOnlyAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| OpenSessionAction | Call the session reader and read everything in the zip archive. | Class | cytoscape.actions | CytoScape |
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| PluginManagerAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| PluginUpdateAction | | Class | cytoscape.actions | CytoScape |
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| PreferenceAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| PrintAction | | Class | cytoscape.actions | CytoScape |
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| ProxyServerAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| RotateSelectedNodesAction | Rotates the given selection by the specified amount. | Class | cytoscape.actions | CytoScape |
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| SaveSessionAction | Save Session action. | Class | cytoscape.actions | CytoScape |
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| SaveSessionAsAction | Same as SaveSessionAction, but always opens file chooser. | Class | cytoscape.actions | CytoScape |
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| SelectAdjacentEdgesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| SelectAllAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| SelectAllEdgesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| SelectAllNodesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| SelectConnectedNodesAction | select every node connected to the current selected edges. | Class | cytoscape.actions | CytoScape |
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| SelectFirstNeighborsAction | select every first neighbor (directly connected nodes) of the currentlySee Also:Serialized Form | Class | cytoscape.actions | CytoScape |
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| SelectionModeAction | | Class | cytoscape.actions | CytoScape |
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| SetVisualPropertiesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ShowAllAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ShowCustomGraphicsManagerAction | Display Custom Graphics Manager GUI. | Class | cytoscape.actions | CytoScape |
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| ShowGraphicsDetailsAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| StraightenSelectedEdgesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ToggleVisualMapperAction | This class implements two menu items that allow enabling and disabling theSee Also:Serialized Form | Class | cytoscape.actions | CytoScape |
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| UnHideSelectedAction | See Also:Serialized FormFields inherited from class javax. | Class | cytoscape.actions | CytoScape |
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| UnHideSelectedEdgesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| UnHideSelectedNodesAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| WebServiceNetworkImportAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ZoomAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |
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| ZoomSelectedAction | See Also:Serialized FormFields inherited from class cytoscape. | Class | cytoscape.actions | CytoScape |