| Name | Description | Type | Package | Framework |
| BiologicalProcessAnnotationReader | The purpose of this class is to convert a 'gene_association. | Class | cytoscape.cruft.obo | CytoScape |
| BiologicalProcessAnnotationTester | Class | cytoscape.cruft.obo.test | CytoScape | |
| CellularComponentAnnotationReader | The purpose of this class is to convert a 'gene_association. | Class | cytoscape.cruft.obo | CytoScape |
| CellularComponentAnnotationTester | Class | cytoscape.cruft.obo.test | CytoScape | |
| MolecularFunctionAnnotationReader | The purpose of this class is to convert a 'gene_association. | Class | cytoscape.cruft.obo | CytoScape |
| MolecularFunctionAnnotationTester | Class | cytoscape.cruft.obo.test | CytoScape | |
| OboOntologyReader | The purpose of this class is to convert a 'gene_ontology. | Class | cytoscape.cruft.obo | CytoScape |
| OboOntologyReader2 | The purpose of this class is to convert a 'gene_ontology. | Class | cytoscape.cruft.obo | CytoScape |
| OboOntologyTester | Class | cytoscape.cruft.obo.test | CytoScape | |
| SynonymReader | The purpose of this class is to convert a 'gene_association. | Class | cytoscape.cruft.obo | CytoScape |
| SynonymTester | Class | cytoscape.cruft.obo.test | CytoScape | |