| Name | Description | Type | Package | Framework |
| AnnotationFlatFileReader | Class | cytoscape.data.annotation.readers | CytoScape | |
| AnnotationXmlReader | Class | cytoscape.data.annotation.readers | CytoScape | |
| OntologyFlatFileReader | Class | cytoscape.data.annotation.readers | CytoScape | |
| OntologyXmlReader | Class | cytoscape.data.annotation.readers | CytoScape | |