| Name | Description | Type | Package | Framework |
| BioDataServer | Class | cytoscape.data.servers | CytoScape | |
| BioDataServerInterface | Interface | cytoscape.data.servers | CytoScape | |
| BioDataServerRmi | This is the actual class which implements BioDataServer Methods. | Class | cytoscape.data.servers | CytoScape |
| clear | Class | cytoscape.data.servers | CytoScape | |
| getCanonicalName | Class | cytoscape.data.servers | CytoScape | |
| getCommonName | Class | cytoscape.data.servers | CytoScape | |
| loadAnnotation | load an annotation into an rmi biodata server. | Class | cytoscape.data.servers | CytoScape |
| loadAnnotationFromFlatFiles | load an annotation into an rmi biodata server. | Class | cytoscape.data.servers | CytoScape |
| loadThesaurus | load an thesaurus into an rmi biodata server. | Class | cytoscape.data.servers | CytoScape |
| OntologyServer | Ontology Server which manages ontologies, aliases, and bookmarks. | Class | cytoscape.data.servers | CytoScape |
| OntologyServer .OntologyType | Class | cytoscape.data.servers | CytoScape | |
| status | Class | cytoscape.data.servers | CytoScape | |