| Name | Description | Type | Package | Framework |
| BookmarkDialog | Class | cytoscape.dialogs.preferences | CytoScape | |
| ColorScaleTable | Class | cytoscape.dialogs | CytoScape | |
| EdgeAttributesPopupDetails | This class provides a detailed list of attribute information for a givenSee Also:Serialized Form | Class | cytoscape.dialogs | CytoScape |
| EditBookmarkDialog | Class | cytoscape.dialogs.preferences | CytoScape | |
| EditNetworkTitleDialog | Class | cytoscape.dialogs | CytoScape | |
| ExportAsGraphicsFileChooser | Dialog that chooses file to export to. | Class | cytoscape.dialogs | CytoScape |
| ExportBitmapOptionsDialog | Options dialog for exporting to bitmap images. | Class | cytoscape.dialogs | CytoScape |
| ExpressionDataPopupTable | Class | cytoscape.dialogs | CytoScape | |
| GinyEdgeControlDialog | present a JTree with edge attributes names as top level nodes, and attribute values as child nodes; any node/s, once selected, are operated on by buttons in the bottom | Class | cytoscape.dialogs | CytoScape |
| GraphObjectSelection | Class | cytoscape.dialogs | CytoScape | |
| GridBagGroup | Class | cytoscape.dialogs | CytoScape | |
| IconPopupButton | Class | cytoscape.dialogs | CytoScape | |
| ImportAttributeMatrixDialog | This class prompts the user for data for entry of the attribute matrix, which includes expression data as a use case. | Class | cytoscape.dialogs | CytoScape |
| ImportNetworkDialog | Class | cytoscape.dialogs | CytoScape | |
| IntegerEntryField | Class | cytoscape.dialogs | CytoScape | |
| JointIntegerEntry | Class | cytoscape.dialogs | CytoScape | |
| LabelTextPanel | Class | cytoscape.dialogs | CytoScape | |
| LicenseDialog | Class | cytoscape.dialogs.plugins | CytoScape | |
| LoggerDialog | Class | cytoscape.dialogs.logger | CytoScape | |
| ManagerModel | Fairly similar to DefaultTreeModel but I wanted to add some extra functionality to removing/adding nodes and use my own node objects | Class | cytoscape.dialogs.plugins | CytoScape |
| MiscGB | We DO need to replace this with swing-layout! Miscellaneous static GridBagLayout utilities | Class | cytoscape.dialogs | CytoScape |
| NetworkMetaDataDialog | Dialog for editing network metadata in RDF. | Class | cytoscape.dialogs | CytoScape |
| NetworkMetaDataTableModel | Table model for the Network Metadata Dialog. | Class | cytoscape.dialogs | CytoScape |
| NewSlider | Class | cytoscape.dialogs | CytoScape | |
| NewStringPopupDialog | NewStringPopupDialog: a dialog that is used for creating a new string. | Class | cytoscape.dialogs | CytoScape |
| PhoebeNodeControl | An Adobe style node organizer. | Class | cytoscape.dialogs | CytoScape |
| PluginIndex | Class | cytoscape.dialogs.plugins | CytoScape | |
| PluginManageDialog | Class | cytoscape.dialogs.plugins | CytoScape | |
| PluginManageDialog .CommonError | Class | cytoscape.dialogs.plugins | CytoScape | |
| PluginManageDialog .PluginInstallStatus | Class | cytoscape.dialogs.plugins | CytoScape | |
| PluginsTableModel | See Also:Serialized FormFields inherited from class javax. | Class | cytoscape.dialogs.preferences | CytoScape |
| PluginUpdateDialog | Class | cytoscape.dialogs.plugins | CytoScape | |
| PluginUrlDialog | Class | cytoscape.dialogs.plugins | CytoScape | |
| PopupTextArea | Class | cytoscape.dialogs | CytoScape | |
| PreferencesDialog | Class | cytoscape.dialogs.preferences | CytoScape | |
| PreferenceTableModel | Class | cytoscape.dialogs.preferences | CytoScape | |
| PreferenceValueDialog | Class | cytoscape.dialogs.preferences | CytoScape | |
| ProxyServerDialog | Class | cytoscape.dialogs.preferences | CytoScape | |
| SetNestedNetworkDialog | Class | cytoscape.dialogs | CytoScape | |
| ShrinkExpandGraph | This class shifts the nodes to shrink or expand the graph: it averages the coordinates of all the nodes to find the center | Class | cytoscape.dialogs | CytoScape |
| ShrinkExpandGraphUI | Class | cytoscape.dialogs | CytoScape | |
| TreeCellRenderer | Class | cytoscape.dialogs.plugins | CytoScape | |
| TreeNode | See Also:Serialized FormFields inherited from class javax. | Class | cytoscape.dialogs.plugins | CytoScape |