| Name | Description | Type | Package | Framework |
| BasicGraphViewHandler | A basic GraphViewHandler that simply reflects GraphPerspective changes on a given GraphView | Class | cytoscape.view | CytoScape |
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| BiModalJSplitPane | The BiModalJSplitPane class extends JSplitPane to provide two modes: MODE_SHOW_SPLIT: The split in the split pane appears as it normally | Class | cytoscape.view.cytopanels | CytoScape |
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| ColumnTypes | enum ColumnTypesextends EnumEnum Constant SummaryEDGES | Class | cytoscape.view | CytoScape |
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| CyDesktopManager | | Class | cytoscape.view | CytoScape |
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| CyDesktopManager .Arrange | | Class | cytoscape.view | CytoScape |
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| CyEdgeView | Fields inherited from interface giny. | Interface | cytoscape.view | CytoScape |
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| CyHelpBroker | This class creates the Cytoscape Help Broker for managing the JavaHelp system and help set access | Class | cytoscape.view | CytoScape |
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| CyMenus | Creates the menu and tool bars for a Cytoscape window object. | Class | cytoscape.view | CytoScape |
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| CyNetworkView | CyNetworkView is responsible for actually getting a graph to show up on the screen. | Interface | cytoscape.view | CytoScape |
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| CyNodeView | Fields inherited from interface giny. | Interface | cytoscape.view | CytoScape |
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| CytoPanel | Interface to a CytoPanel. | Interface | cytoscape.view.cytopanels | CytoScape |
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| CytoPanelContainer | Interface for Container of CytoPanel Objects. | Interface | cytoscape.view.cytopanels | CytoScape |
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| CytoPanelImp | The CytoPanel class extends JPanel to provide the following functionality: Floating/Docking of Panel. | Class | cytoscape.view.cytopanels | CytoScape |
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| CytoPanelListener | This listener interface provides the mechanism to respond to CytoPanel Events. | Interface | cytoscape.view.cytopanels | CytoScape |
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| CytoPanelName | enum CytoPanelNameextends EnumAn enum that maps names to compass directions. | Class | cytoscape.view.cytopanels | CytoScape |
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| CytoPanelState | CytoPanelState Class. | Class | cytoscape.view.cytopanels | CytoScape |
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| CytoPanelUtil | Contains methods to assist with various tasks performed by the CytoPanel API. | Class | cytoscape.view.cytopanels | CytoScape |
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| CytoscapeDesktop | The CytoscapeDesktop is the central Window for working with CytoscapeSee Also:Serialized Form | Class | cytoscape.view | CytoScape |
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| FlagAndSelectionHandler | This class synchronizes the flagged status of nodes and edges as held by a SelectFilter object of a network with the selection status of the corresponding | Class | cytoscape.view | CytoScape |
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| GraphViewController | | Class | cytoscape.view | CytoScape |
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| GraphViewHandler | This interface represents an object that handles a change in a giny. | Interface | cytoscape.view | CytoScape |
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| IconTableCellRenderer | | Class | cytoscape.view | CytoScape |
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| InternalFrameComponent | This class manages the JLayeredPane that resides in each internal frame of cytoscape. | Class | cytoscape.view | CytoScape |
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| NetworkPanel | GUI component for managing network list in current session. | Class | cytoscape.view | CytoScape |
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| NetworkTreeNode | See Also:Serialized FormFields inherited from class javax. | Class | cytoscape.view | CytoScape |
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| NetworkTreeTableModel | Inner class that extends the AbstractTreeTableModelFields inherited from class cytoscape. | Class | cytoscape.view | CytoScape |
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| NetworkViewManager | | Class | cytoscape.view | CytoScape |
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| TreeCellRenderer | | Class | cytoscape.view | CytoScape |