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#Fiji.plugin.trackmate Classes and Interfaces - 311 results found.
NameDescriptionTypePackageFramework
AbstractFeatureGrapherClassfiji.plugin.trackmate.featuresFiji
AbstractProviderClassfiji.plugin.trackmate.providersFiji
AbstractSemiAutoTrackerA class made to perform semi-automated tracking of spots in TrackMate & The user has to select one spot, one a meaningful location.Classfiji.plugin.trackmate.detection.semiautoFiji
AbstractSemiAutoTracker .SearchRegionA utility class made to return the information on a neighborhood generated from a source around a Spot.Classfiji.plugin.trackmate.detection.semiauto.AbstractSemiAutoTrackerFiji
AbstractTMActionClassfiji.plugin.trackmate.actionFiji
AbstractTrackMateModelViewAn abstract class for spot displayers, that can overlay detected spots and tracks on top of the image data.Classfiji.plugin.trackmate.visualizationFiji
ActionChooserDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
ActionChooserPanelClassfiji.plugin.trackmate.gui.panelsFiji
ActionListenablePanelClassfiji.plugin.trackmate.gui.panelsFiji
ActionProviderClassfiji.plugin.trackmate.providersFiji
AlphanumComparatorThe Alphanum Algorithm is an improved sorting algorithm for strings containing numbers.Classfiji.plugin.trackmate.utilFiji
AssignmentAlgorithmJust in case I want to try more than one implementation of the assignment algorithm.Interfacefiji.plugin.trackmate.tracking.oldlap.hungarianFiji
AssignmentProblemAn implementation of this: http://en.Classfiji.plugin.trackmate.tracking.oldlap.hungarianFiji
BasicDetectorConfigurationPanelClassfiji.plugin.trackmate.gui.panels.detectorFiji
BlockLogDetectorClassfiji.plugin.trackmate.detectionFiji
BlockLogDetectorConfigurationPanelClassfiji.plugin.trackmate.gui.panels.detectorFiji
BlockLogDetectorFactoryClassfiji.plugin.trackmate.detectionFiji
CaptureOverlayActionClassfiji.plugin.trackmate.actionFiji
CaptureOverlayAction .FactoryClassfiji.plugin.trackmate.action.CaptureOverlayActionFiji
CategoryJComboBoxA JcomboBox that displays categories, and return the category the selectedAuthor:Jean-Yves Tinevez, adapted fromClassfiji.plugin.trackmate.gui.panels.componentsFiji
ConvexBranchesDecompositionA class that can decompose the tracks of a Model in convex branches.Classfiji.plugin.trackmate.graphFiji
ConvexBranchesDecomposition .TrackBranchDecompositionClassfiji.plugin.trackmate.graph.ConvexBranchesDecompositionFiji
CopyOverlayActionClassfiji.plugin.trackmate.actionFiji
CopyOverlayAction .FactoryClassfiji.plugin.trackmate.action.CopyOverlayActionFiji
CostFunctionInterface representing a function that can calculate the cost to link a source object to a target object.Interfacefiji.plugin.trackmate.tracking.sparselap.costfunctionFiji
CostFunctionsInterface for cost function classes, which take a Matrix and fill in values according to the cost function.Interfacefiji.plugin.trackmate.tracking.oldlap.costfunctionFiji
CostMatrixCreatorInterface for function that can generate a SparseCostMatrix from assignment candidates.Interfacefiji.plugin.trackmate.tracking.sparselap.costmatrixFiji
CVMKalmanFilterA Kalman filter that deals with a single particle motion in 3D with a constant velocity vector.Classfiji.plugin.trackmate.tracking.kalmanFiji
DebugClassfiji.plugin.trackmateFiji
DefaultCostMatrixCreatorA CostMatrixCreator that build a cost matrix from 3 lists containing the sources, the targets and the associated costs.Classfiji.plugin.trackmate.tracking.sparselap.costmatrixFiji
DefaultCostMatrixCreator .AssignmentClassfiji.plugin.trackmate.tracking.sparselap.costmatrix.DefaultCostMatrixCreatorFiji
DefaultFileFilterFilter for use in a JFileChooser.Classfiji.plugin.trackmate.utilFiji
DefaultFileFilter .EditorFileFilterUtility file filter to accept editor files, namely .Classfiji.plugin.trackmate.util.DefaultFileFilterFiji
DefaultFileFilter .ImageFileFilterUtility file filter to accept all image formats supported by image io.Classfiji.plugin.trackmate.util.DefaultFileFilterFiji
DetectionDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
DetectionUtilsClassfiji.plugin.trackmate.detectionFiji
DetectorChoiceDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
DetectorConfigurationDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
DetectorKeysClassfiji.plugin.trackmate.detectionFiji
DetectorProviderClassfiji.plugin.trackmate.providersFiji
DimensionClassfiji.plugin.trackmateFiji
DisplaySettingsEventAn event object fired when the user changes one of the display settings through this GUI panel.Classfiji.plugin.trackmate.guiFiji
DisplaySettingsListenerInterface for classes that listen to display settings changes on a GUI.Interfacefiji.plugin.trackmate.guiFiji
DogDetectorClassfiji.plugin.trackmate.detectionFiji
DogDetectorConfigurationPanelClassfiji.plugin.trackmate.gui.panels.detectorFiji
DogDetectorFactoryClassfiji.plugin.trackmate.detectionFiji
DownsampleLogDetectorClassfiji.plugin.trackmate.detectionFiji
DownSampleLogDetectorConfigurationPanelClassfiji.plugin.trackmate.gui.panels.detectorFiji
DownsampleLogDetectorFactoryClassfiji.plugin.trackmate.detectionFiji
DummySpotColorGeneratorA dummy spot color generator that always return the default color.Classfiji.plugin.trackmate.visualizationFiji
DummyTrackColorGeneratorA dummy track color generator that always return the default color.Classfiji.plugin.trackmate.visualizationFiji
EdgeAnalyzerInterface for analyzers that can compute scalar numerical features for an edge of a TrackMate model.Interfacefiji.plugin.trackmate.features.edgesFiji
EdgeAnalyzerProviderA provider for the edge analyzers provided in the GUI.Classfiji.plugin.trackmate.providersFiji
EdgeFeatureCalculatorA class dedicated to centralizing the calculation of the numerical features of spots, through EdgeAnalyzers.Classfiji.plugin.trackmate.featuresFiji
EdgeFeatureGrapherClassfiji.plugin.trackmate.featuresFiji
EdgeTargetAnalyzerClassfiji.plugin.trackmate.features.edgesFiji
EdgeTimeLocationAnalyzerClassfiji.plugin.trackmate.features.edgesFiji
EdgeVelocityAnalyzerClassfiji.plugin.trackmate.features.edgesFiji
ExportableChartPanelClassfiji.plugin.trackmate.utilFiji
ExportStatsToIJActionClassfiji.plugin.trackmate.actionFiji
ExportStatsToIJAction .FactoryClassfiji.plugin.trackmate.action.ExportStatsToIJActionFiji
ExportTracksToXMLClassfiji.plugin.trackmate.actionFiji
ExportTracksToXML .FactoryClassfiji.plugin.trackmate.action.ExportTracksToXMLFiji
ExtractTrackStackActionClassfiji.plugin.trackmate.actionFiji
ExtractTrackStackAction .FactoryClassfiji.plugin.trackmate.action.ExtractTrackStackActionFiji
FastLAPTrackerClassfiji.plugin.trackmate.tracking.oldlapFiji
FastLAPTrackerFactoryClassfiji.plugin.trackmate.tracking.oldlapFiji
FeatureAnalyzerInterfacefiji.plugin.trackmate.featuresFiji
FeatureColorGeneratorInterface for color generator that can color objects based on a feature identified by a String.Interfacefiji.plugin.trackmate.visualizationFiji
FeatureFilterA helper class to store a feature filter.Classfiji.plugin.trackmate.featuresFiji
FeatureModelThis class represents the part of the Model that is in charge of dealing with spot features and track features.Classfiji.plugin.trackmateFiji
FeaturePenaltyCostFunctionA cost function that tempers a square distance cost by difference in feature This cost is calculated as follow:Classfiji.plugin.trackmate.tracking.sparselap.costfunctionFiji
FeaturePlotSelectionPanelA simple Panel to allow the selection of a X key amongst an enum, and of multiple Y keys from the same enum.Classfiji.plugin.trackmate.gui.panels.componentsFiji
FeaturePlotSelectionPanelA simple Panel to allow the selection of a X key amongst an enum, and of multiple Y keys from the same enum.Classfiji.plugin.trackmate.visualization.trackschemeFiji
FilterGuiPanelClassfiji.plugin.trackmate.gui.panels.componentsFiji
FilterPanelClassfiji.plugin.trackmate.gui.panelsFiji
FlagNodeClassfiji.plugin.trackmate.tracking.kdtreeFiji
FromContinuousBranchesClassfiji.plugin.trackmate.graphFiji
Function1Interface for function that compute values from a single input and store it in Author:Jean-Yves InevezInterfacefiji.plugin.trackmate.graphFiji
Function2Interface for function that compute values from a two inputs and store it in Author:Jean-Yves InevezInterfacefiji.plugin.trackmate.graphFiji
GapClosingCostFunctionGap closing cost function used with LAPTracker.Classfiji.plugin.trackmate.tracking.oldlap.costfunctionFiji
GrapherDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
GrapherPanelClassfiji.plugin.trackmate.guiFiji
GraphSegmentSplitterClassfiji.plugin.trackmate.tracking.sparselap.costmatrixFiji
GraphUtilsClassfiji.plugin.trackmate.graphFiji
GuiUtilsClassfiji.plugin.trackmate.guiFiji
HungarianAlgorithmAn implementation of the classic Hungarian algorithm for the assignment problem.Classfiji.plugin.trackmate.tracking.oldlap.hungarianFiji
HyperStackDisplayerClassfiji.plugin.trackmate.visualization.hyperstackFiji
HyperStackDisplayerFactoryClassfiji.plugin.trackmate.visualization.hyperstackFiji
IcyTrackExporterClassfiji.plugin.trackmate.actionFiji
IcyTrackExporter .FactoryClassfiji.plugin.trackmate.action.IcyTrackExporterFiji
IcyTrackFormatWriterClassfiji.plugin.trackmate.ioFiji
IcyXmlReaderA reader for the XML files generated in the TrackManager of the Icy software The reader requires a calibration s to operate, so as to generate a properClassfiji.plugin.trackmate.ioFiji
ImagePlusChooserClassfiji.plugin.trackmate.gui.panels.componentsFiji
IndependentSpotFeatureAnalyzerClassfiji.plugin.trackmate.features.spotFiji
InfoPaneClassfiji.plugin.trackmate.visualization.trackschemeFiji
InitFilterDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
InitFilterPanelClassfiji.plugin.trackmate.gui.panelsFiji
IOUtilsA collection of static utilities for the input/output of xml files.Classfiji.plugin.trackmate.ioFiji
ISBIChallengeExporterClassfiji.plugin.trackmate.actionFiji
ISBIChallengeExporter .FactoryClassfiji.plugin.trackmate.action.ISBIChallengeExporterFiji
JaqamanLinkerLinks two lists of objects based on the LAP framework described in Jaqaman et al.Classfiji.plugin.trackmate.tracking.sparselap.linkerFiji
JaqamanLinkingCostMatrixCreatorA CostMatrixCreator that can generate a cost matrix from a list of sources, a list of targets and a CostFunction that can generate aClassfiji.plugin.trackmate.tracking.sparselap.costmatrixFiji
JaqamanSegmentCostMatrixCreatorThis class generates the top-left quadrant of the LAP segment linking cost matrix, following Jaqaman et al.Classfiji.plugin.trackmate.tracking.sparselap.costmatrixFiji
JGraphXAdapterClassfiji.plugin.trackmate.visualization.trackschemeFiji
JLabelLoggerClassfiji.plugin.trackmate.utilFiji
JNumericTextFieldClassfiji.plugin.trackmate.gui.panels.componentsFiji
JonkerVolgenantAlgorithm Based on: Jonker, R.Classfiji.plugin.trackmate.tracking.oldlap.hungarianFiji
JPanelColorByFeatureGUIClassfiji.plugin.trackmate.gui.panels.componentsFiji
JPanelFeaturePenaltyClassfiji.plugin.trackmate.gui.panels.componentsFiji
JPanelFeatureSelectionGuiClassfiji.plugin.trackmate.gui.panels.componentsFiji
JPanelTrackerSettingsMainClassfiji.plugin.trackmate.gui.panels.trackerFiji
KalmanTrackerClassfiji.plugin.trackmate.tracking.kalmanFiji
KalmanTrackerConfigPanelClassfiji.plugin.trackmate.gui.panels.trackerFiji
KalmanTrackerFactoryClassfiji.plugin.trackmate.tracking.kalmanFiji
LAPJV tailored for sparse cost matrices.Classfiji.plugin.trackmate.tracking.sparselap.linkerFiji
LAPTracker This class tracks objects by formulating the problem as a Linear Assignment For reference, see: Jaqaman, K.Classfiji.plugin.trackmate.tracking.oldlapFiji
LAPTrackerCostMatrixCreatorContains the mutually shared fields and private functions used by the two cost matrix classes LinkingCostMatrixCreator and TrackSegmentCostMatrixCreatorClassfiji.plugin.trackmate.tracking.oldlap.costmatrixFiji
LAPTrackerFactoryClassfiji.plugin.trackmate.tracking.oldlapFiji
LAPTrackerSettingsPanelClassfiji.plugin.trackmate.gui.panels.trackerFiji
LAPUtilsClassfiji.plugin.trackmate.trackingFiji
LinkingCostFunctionLinking cost function used with LAPTracker.Classfiji.plugin.trackmate.tracking.oldlap.costfunctionFiji
LinkingCostMatrixCreatorCreates the cost matrix described in Figure 1b in the paper.Classfiji.plugin.trackmate.tracking.oldlap.costmatrixFiji
LinkNew3DViewerActionClassfiji.plugin.trackmate.actionFiji
LinkNew3DViewerAction .FactoryClassfiji.plugin.trackmate.action.LinkNew3DViewerActionFiji
ListChooserPanelA panel to let the user choose what displayer he wants to use.Classfiji.plugin.trackmate.gui.panelsFiji
LoadDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
LoadICYTrackPlugIn_Classfiji.plugin.trackmateFiji
LoadTrackMatePlugIn_Classfiji.plugin.trackmateFiji
LogDetectorClassfiji.plugin.trackmate.detectionFiji
LogDetectorConfigurationPanelConfiguration panel for spot detectors based on LoG detector.Classfiji.plugin.trackmate.gui.panels.detectorFiji
LogDetectorFactoryClassfiji.plugin.trackmate.detectionFiji
LoggerThis class is used to log messages occurring during TrackMate execution.Classfiji.plugin.trackmateFiji
Logger .SlaveLoggerA logger that wraps a master logger and uses it to echo any received message.Classfiji.plugin.trackmate.LoggerFiji
Logger .StringBuilderLoggerThis Logger outputs to a StringBuilder given at construction.Classfiji.plugin.trackmate.LoggerFiji
LogPanelA panel using s JTextPane to log events.Classfiji.plugin.trackmate.guiFiji
LogPanelDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
ManualDetectorFactoryClassfiji.plugin.trackmate.detectionFiji
ManualEdgeColorAnalyzerClassfiji.plugin.trackmate.features.manualFiji
ManualEdgeColorGeneratorClassfiji.plugin.trackmate.visualizationFiji
ManualSpotColorAnalyzerFactoryClassfiji.plugin.trackmate.features.manualFiji
ManualSpotColorGeneratorClassfiji.plugin.trackmate.visualizationFiji
ManualTrackerFactoryClassfiji.plugin.trackmate.trackingFiji
ManualTrackingGUIControllerClassfiji.plugin.trackmate.guiFiji
ManualTrackingPlugIn_Classfiji.plugin.trackmateFiji
MedianFilter2DA simple median filter that operates on 1D, 2D or 3D images.Classfiji.plugin.trackmate.detection.utilFiji
MergeFileActionClassfiji.plugin.trackmate.actionFiji
MergeFileAction .FactoryClassfiji.plugin.trackmate.action.MergeFileActionFiji
MergingCostFunctionMerging cost function used with LAPTracker.Classfiji.plugin.trackmate.tracking.oldlap.costfunctionFiji
MinMaxAdjustableSimple interface for objects whose effects depend on a minimal and maximal double value that can be adjusted manually or automatically.Interfacefiji.plugin.trackmate.visualizationFiji
ModelThe model for the data managed by TrackMate trackmate.Classfiji.plugin.trackmateFiji
ModelChangeEventClassfiji.plugin.trackmateFiji
ModelChangeListenerAn interface for listeners that will be notified when a ModelAuthor:Jean-Yves Tinevez Interfacefiji.plugin.trackmateFiji
ModelFeatureUpdaterA utility class that listens to the change occurring in a model, and updates its spot, edge and track features accordingly.Classfiji.plugin.trackmate.featuresFiji
ModelToolsA collection of static utilities made to ease the manipulation of a TrackMate Model and SelectionModel.Classfiji.plugin.trackmate.utilFiji
MunkresKuhnAlgorithmThis implements optimal matching between two sets given a weight matrix (where the goal is to minimize the cumulative weight of the matches).Classfiji.plugin.trackmate.tracking.oldlap.hungarianFiji
mxScaledLabelShapeThis is a shape that is made to display a cell in a way that suits for our spots objects.Classfiji.plugin.trackmate.visualization.trackschemeFiji
mxSideTextShapeA text shape that draws edge label along the edge line and parallel to it.Classfiji.plugin.trackmate.visualization.trackschemeFiji
NearestNeighborFlagSearchOnKDTreeClassfiji.plugin.trackmate.tracking.kdtreeFiji
NearestNeighborTrackerClassfiji.plugin.trackmate.tracking.kdtreeFiji
NearestNeighborTrackerFactoryClassfiji.plugin.trackmate.tracking.kdtreeFiji
NearestNeighborTrackerSettingsPanelClassfiji.plugin.trackmate.gui.panels.trackerFiji
OnRequestUpdaterThis class extends Thread and is suited to call methods that are typically called often, but takes time to complete, such as display refreshing.Classfiji.plugin.trackmate.utilFiji
OnRequestUpdater .RefreshableInterfacefiji.plugin.trackmate.util.OnRequestUpdaterFiji
OutputFunctionInterface for functions that return a new object, computed from two input arguments.Interfacefiji.plugin.trackmate.graphFiji
PerEdgeFeatureColorGeneratorClassfiji.plugin.trackmate.visualizationFiji
PerTrackFeatureColorGeneratorA TrackColorGenerator that generate colors based on the whole trackAuthor:Jean-Yves TinevezClassfiji.plugin.trackmate.visualizationFiji
PlotNSpotsVsTimeActionClassfiji.plugin.trackmate.actionFiji
PlotNSpotsVsTimeAction .FactoryClassfiji.plugin.trackmate.action.PlotNSpotsVsTimeActionFiji
RadiusToEstimatedActionClassfiji.plugin.trackmate.actionFiji
RadiusToEstimatedAction .FactoryClassfiji.plugin.trackmate.action.RadiusToEstimatedActionFiji
RecalculateFeatureActionClassfiji.plugin.trackmate.actionFiji
RecalculateFeatureAction .FactoryClassfiji.plugin.trackmate.action.RecalculateFeatureActionFiji
RecursiveCumSumClassfiji.plugin.trackmate.graphFiji
ResetRadiusActionClassfiji.plugin.trackmate.actionFiji
ResetRadiusAction .FactoryClassfiji.plugin.trackmate.action.ResetRadiusActionFiji
ResetSpotTimeFeatureActionClassfiji.plugin.trackmate.actionFiji
ResetSpotTimeFeatureAction .FactoryClassfiji.plugin.trackmate.action.ResetSpotTimeFeatureActionFiji
ResizableDoubleArrayClassfiji.plugin.trackmate.tracking.sparselap.costmatrixFiji
SaveActionClassfiji.plugin.trackmate.visualization.trackschemeFiji
SaveDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
SearchBarClassfiji.plugin.trackmate.visualization.trackscheme.utilsFiji
SelectionChangeEventAn event that characterizes a change in the current selection.Classfiji.plugin.trackmateFiji
SelectionChangeListenerInterfacefiji.plugin.trackmateFiji
SelectionModelA component of Model that handles spot and edges selection.Classfiji.plugin.trackmateFiji
SemiAutoTrackerClassfiji.plugin.trackmate.detection.semiautoFiji
SetColorScaleDialogClassfiji.plugin.trackmate.gui.panels.componentsFiji
SettingsThis class is used to store user settings for the TrackMate trackmate.Classfiji.plugin.trackmateFiji
SimpleFastLAPTrackerFactoryClassfiji.plugin.trackmate.tracking.oldlapFiji
SimpleLAPTrackerFactoryClassfiji.plugin.trackmate.tracking.oldlapFiji
SimpleLAPTrackerSettingsPanelA simplified configuration panel for the LAPTracker.Classfiji.plugin.trackmate.gui.panels.trackerFiji
SimpleSparseLAPTrackerFactoryClassfiji.plugin.trackmate.tracking.sparselapFiji
SomeDialogDescriptorAn abstract class made for describing panels that generate a dialog, like save and load panels.Classfiji.plugin.trackmate.gui.descriptorsFiji
SortedDepthFirstIteratorA depth-first iterator, that - when branching - chooses the next vertex according to a specified comparator.Classfiji.plugin.trackmate.graphFiji
SparseCostMatrixA class to represent a sparse cost matrix.Classfiji.plugin.trackmate.tracking.sparselap.linkerFiji
SparseLAPFrameToFrameTrackerClassfiji.plugin.trackmate.tracking.sparselapFiji
SparseLAPSegmentTrackerThis class tracks deals with the second step of tracking according to the LAP tracking framework formulated by Jaqaman, K.Classfiji.plugin.trackmate.tracking.sparselapFiji
SparseLAPTrackerClassfiji.plugin.trackmate.tracking.sparselapFiji
SparseLAPTrackerFactoryClassfiji.plugin.trackmate.tracking.sparselapFiji
SplittingCostFunctionSplitting cost function used with LAPTracker.Classfiji.plugin.trackmate.tracking.oldlap.costfunctionFiji
SpotA RealLocalizable implementation, used in TrackMate to represent a On top of being a RealLocalizable, it can store additional numericalClassfiji.plugin.trackmateFiji
SpotAnalyzerInterface for a class that can compute feature on a collection of spots.Interfacefiji.plugin.trackmate.features.spotFiji
SpotAnalyzerFactoryInterface for factories that can generate a SpotAnalyzer configured to operate on a specific frame of a model.Interfacefiji.plugin.trackmate.features.spotFiji
SpotAnalyzerProviderA provider for the spot analyzer factories provided in the GUI.Classfiji.plugin.trackmate.providersFiji
SpotCollectionA utility class that wrap the SortedMap we use to store the spots contained in each frame with a few utility methods.Classfiji.plugin.trackmateFiji
SpotColorGeneratorClassfiji.plugin.trackmate.visualizationFiji
SpotColorGeneratorPerTrackFeatureClassfiji.plugin.trackmate.visualizationFiji
SpotContrastAnalyzerClassfiji.plugin.trackmate.features.spotFiji
SpotContrastAnalyzerFactoryClassfiji.plugin.trackmate.features.spotFiji
SpotContrastAndSNRAnalyzerThis FeatureAnalyzer computes both the Michelson contrast and the SNR for each spot:Classfiji.plugin.trackmate.features.spotFiji
SpotContrastAndSNRAnalyzerFactoryA factory for SpotContrastAndSNRAnalyzers.Classfiji.plugin.trackmate.features.spotFiji
SpotDetectorInterface for Spot detector classes, that are able to segment spots of a given estimated radius within a 2D or 3D image.Interfacefiji.plugin.trackmate.detectionFiji
SpotDetectorFactoryMother interface for SpotDetector factories.Interfacefiji.plugin.trackmate.detectionFiji
SpotDisplayer3DClassfiji.plugin.trackmate.visualization.threedviewerFiji
SpotDisplayer3DFactoryClassfiji.plugin.trackmate.visualization.threedviewerFiji
SpotEditToolClassfiji.plugin.trackmate.visualization.hyperstackFiji
SpotEditToolConfigPanelClassfiji.plugin.trackmate.visualization.hyperstackFiji
SpotFeatureCalculatorA class dedicated to centralizing the calculation of the numerical features of spots, through SpotAnalyzers.Classfiji.plugin.trackmate.featuresFiji
SpotFeatureGrapherClassfiji.plugin.trackmate.featuresFiji
SpotFilterDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
SpotGroupNodeClassfiji.plugin.trackmate.visualization.threedviewerFiji
SpotIconGrabberThis class is used to take a snapshot of a Spot object (or collection) from its coordinates and an ImagePlus that contain theClassfiji.plugin.trackmate.visualization.trackschemeFiji
SpotImageUpdaterClassfiji.plugin.trackmate.visualization.trackschemeFiji
SpotIntensityAnalyzerClassfiji.plugin.trackmate.features.spotFiji
SpotIntensityAnalyzerFactoryClassfiji.plugin.trackmate.features.spotFiji
SpotMorphologyAnalyzerThis SpotAnalyzer computes morphology features for the given spots.Classfiji.plugin.trackmate.features.spotFiji
SpotMorphologyAnalyzerFactoryClassfiji.plugin.trackmate.features.spotFiji
SpotNeighborhoodClassfiji.plugin.trackmate.utilFiji
SpotNeighborhoodCursorClassfiji.plugin.trackmate.utilFiji
SpotOverlayThe overlay class in charge of drawing the spot images on the hyperstackAuthor:Jean-Yves Tinevez Classfiji.plugin.trackmate.visualization.hyperstackFiji
SpotRadiusEstimatorClassfiji.plugin.trackmate.features.spotFiji
SpotRadiusEstimatorFactoryClassfiji.plugin.trackmate.features.spotFiji
SpotTrackerThis interface should be used when creating algorithms for linking objects across multiple frames in time-lapse images.Interfacefiji.plugin.trackmate.trackingFiji
SpotTrackerFactoryInterfacefiji.plugin.trackmate.trackingFiji
SquareDistCostFunctionA cost function that returns cost equal to the square distance.Classfiji.plugin.trackmate.tracking.sparselap.costfunctionFiji
SquareNeighborhood3x3Classfiji.plugin.trackmate.detection.utilFiji
SquareNeighborhoodCursor3x3Classfiji.plugin.trackmate.detection.utilFiji
StartDialogDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
StartDialogPanelClassfiji.plugin.trackmate.gui.panelsFiji
StringFormaterInterface for function that can build a human-readable string representation of an objectInterfacefiji.plugin.trackmate.graphFiji
TGMMImporterClassfiji.plugin.trackmate.ioFiji
TimeDirectedDepthFirstIteratorClassfiji.plugin.trackmate.graphFiji
TimeDirectedNeighborIndexClassfiji.plugin.trackmate.graphFiji
TimeDirectedSortedDepthFirstIteratorClassfiji.plugin.trackmate.graphFiji
TMUtilsClassfiji.plugin.trackmate.utilFiji
TmXmlKeysContains the key string used for xml marshaling.Classfiji.plugin.trackmate.ioFiji
TmXmlReaderClassfiji.plugin.trackmate.ioFiji
TmXmlReader_v12A compatibility xml loader than can load TrackMate xml file saved for version prior to 2.Classfiji.plugin.trackmate.ioFiji
TmXmlReader_v20Classfiji.plugin.trackmate.ioFiji
TmXmlWriterClassfiji.plugin.trackmate.ioFiji
TrackAnalyzerMother interface for the classes that can compute the feature of tracks.Interfacefiji.plugin.trackmate.features.trackFiji
TrackAnalyzerProviderA provider for the track analyzers provided in the GUI.Classfiji.plugin.trackmate.providersFiji
TrackBranchAnalysisClassfiji.plugin.trackmate.actionFiji
TrackBranchAnalysis .FactoryClassfiji.plugin.trackmate.action.TrackBranchAnalysisFiji
TrackBranchingAnalyzerClassfiji.plugin.trackmate.features.trackFiji
TrackColorGeneratorInterface for functions that can generate track colors, with a different color for each vertex and edge.Interfacefiji.plugin.trackmate.visualizationFiji
TrackDisplayNodeClassfiji.plugin.trackmate.visualization.threedviewerFiji
TrackDurationAnalyzerClassfiji.plugin.trackmate.features.trackFiji
TrackerChoiceDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
TrackerConfigurationDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
TrackerKeysClassfiji.plugin.trackmate.trackingFiji
TrackerProviderClassfiji.plugin.trackmate.providersFiji
TrackFeatureCalculatorA class dedicated to centralizing the calculation of the numerical features of tracks, through TrackAnalyzers.Classfiji.plugin.trackmate.featuresFiji
TrackFeatureGrapherClassfiji.plugin.trackmate.featuresFiji
TrackFilterDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
TrackIndexAnalyzerClassfiji.plugin.trackmate.features.trackFiji
TrackingDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
TrackLocationAnalyzerClassfiji.plugin.trackmate.features.trackFiji
TrackMate The TrackMate_ class runs on the currently active time-lapse image (2D or 3D) and both identifies and tracks bright spots over time.Classfiji.plugin.trackmateFiji
TrackMateActionThis interface describe a track mate action, that can be run on a TrackMate object to change its content or properties.Interfacefiji.plugin.trackmate.actionFiji
TrackMateActionFactoryInterfacefiji.plugin.trackmate.actionFiji
TrackMateBatchClassfiji.plugin.trackmateFiji
TrackMateGUIControllerClassfiji.plugin.trackmate.guiFiji
TrackMateGUIModelClassfiji.plugin.trackmate.guiFiji
TrackMateModelViewInterfacefiji.plugin.trackmate.visualizationFiji
TrackMateModuleInterface for TrackMate modules.Interfacefiji.plugin.trackmateFiji
TrackMatePlugIn_Classfiji.plugin.trackmateFiji
TrackMateWizardClassfiji.plugin.trackmate.guiFiji
TrackModelA component of Model specialized for tracksAuthor:Jean-Yves TinevezClassfiji.plugin.trackmateFiji
TrackNavigatorClassfiji.plugin.trackmate.utilFiji
TrackOverlayThe overlay class in charge of drawing the tracks on the hyperstack window.Classfiji.plugin.trackmate.visualization.hyperstackFiji
TrackSchemeClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeActionsClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeActions .EditActionClassfiji.plugin.trackmate.visualization.trackscheme.TrackSchemeActionsFiji
TrackSchemeActions .EndActionCenters the view to the last cell in selection, sorted by frame number.Classfiji.plugin.trackmate.visualization.trackscheme.TrackSchemeActionsFiji
TrackSchemeActions .HomeActionCenters the view to the first cell in selection.Classfiji.plugin.trackmate.visualization.trackscheme.TrackSchemeActionsFiji
TrackSchemeActions .ResetZoomActionClassfiji.plugin.trackmate.visualization.trackscheme.TrackSchemeActionsFiji
TrackSchemeFactoryClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeFrameClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeGraphComponentClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeGraphLayoutThis mxGraphLayout arranges cells on a graph in lanes corresponding to tracks.Classfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeKeyboardHandlerClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemePopupMenuClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeStylistClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeSvgCanvasClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSchemeToolbarClassfiji.plugin.trackmate.visualization.trackschemeFiji
TrackSegmentCostMatrixCreatorCreates the cost matrix roughly described in Figure 1c in the paper: Jaqaman, K.Classfiji.plugin.trackmate.tracking.oldlap.costmatrixFiji
TrackSpeedStatisticsAnalyzerClassfiji.plugin.trackmate.features.trackFiji
TrackSpotQualityFeatureAnalyzerClassfiji.plugin.trackmate.features.trackFiji
TrimNotVisibleActionClassfiji.plugin.trackmate.actionFiji
TrimNotVisibleAction .FactoryClassfiji.plugin.trackmate.action.TrimNotVisibleActionFiji
VersionA utility class to deal with version numbers.Classfiji.plugin.trackmate.utilFiji
ViewChoiceDescriptorClassfiji.plugin.trackmate.gui.descriptorsFiji
ViewFactoryInterfacefiji.plugin.trackmate.visualizationFiji
ViewProviderClassfiji.plugin.trackmate.providersFiji
ViewUtilsA collection of static utilities related to TrackMateModelViews.Classfiji.plugin.trackmate.visualizationFiji
WizardPanelDescriptorA base descriptor class used to reference a Component panel for the Wizard, as well as provide general rules as to how the panel should behave.Interfacefiji.plugin.trackmate.gui.descriptorsFiji
WrapLayoutFlowLayout subclass that fully supports wrapping of components.Classfiji.plugin.trackmate.gui.panelsFiji
XYEdgeRendererClassfiji.plugin.trackmate.utilFiji
XYEdgeSeriesClassfiji.plugin.trackmate.utilFiji
XYEdgeSeriesCollectionClassfiji.plugin.trackmate.utilFiji