Search Java Classes and Packages
#Fiji.plugin.trackmate.tracking Classes and Interfaces - 49 results found.
| Name | Description | Type | Package | Framework |
| AssignmentAlgorithm | Just in case I want to try more than one implementation of the assignment algorithm. | Interface | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
| AssignmentProblem | An implementation of this: http://en. | Class | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
| CostFunction | Interface representing a function that can calculate the cost to link a source object to a target object. | Interface | fiji.plugin.trackmate.tracking.sparselap.costfunction | Fiji |
| CostFunctions | Interface for cost function classes, which take a Matrix and fill in values according to the cost function. | Interface | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
| CostMatrixCreator | Interface for function that can generate a SparseCostMatrix from assignment candidates. | Interface | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
| CVMKalmanFilter | A Kalman filter that deals with a single particle motion in 3D with a constant velocity vector. | Class | fiji.plugin.trackmate.tracking.kalman | Fiji |
| DefaultCostMatrixCreator | A CostMatrixCreator that build a cost matrix from 3 lists containing the sources, the targets and the associated costs. | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
| DefaultCostMatrixCreator .Assignment | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix.DefaultCostMatrixCreator | Fiji | |
| FastLAPTracker | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji | |
| FastLAPTrackerFactory | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji | |
| FeaturePenaltyCostFunction | A cost function that tempers a square distance cost by difference in feature This cost is calculated as follow: | Class | fiji.plugin.trackmate.tracking.sparselap.costfunction | Fiji |
| FlagNode | Class | fiji.plugin.trackmate.tracking.kdtree | Fiji | |
| GapClosingCostFunction | Gap closing cost function used with LAPTracker. | Class | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
| GraphSegmentSplitter | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji | |
| HungarianAlgorithm | An implementation of the classic Hungarian algorithm for the assignment problem. | Class | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
| JaqamanLinker | Links two lists of objects based on the LAP framework described in Jaqaman et al. | Class | fiji.plugin.trackmate.tracking.sparselap.linker | Fiji |
| JaqamanLinkingCostMatrixCreator | A CostMatrixCreator that can generate a cost matrix from a list of sources, a list of targets and a CostFunction that can generate a | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
| JaqamanSegmentCostMatrixCreator | This class generates the top-left quadrant of the LAP segment linking cost matrix, following Jaqaman et al. | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji |
| JonkerVolgenantAlgorithm | Based on: Jonker, R. | Class | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
| KalmanTracker | Class | fiji.plugin.trackmate.tracking.kalman | Fiji | |
| KalmanTrackerFactory | Class | fiji.plugin.trackmate.tracking.kalman | Fiji | |
| LAPJV | tailored for sparse cost matrices. | Class | fiji.plugin.trackmate.tracking.sparselap.linker | Fiji |
| LAPTracker | This class tracks objects by formulating the problem as a Linear Assignment For reference, see: Jaqaman, K. | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji |
| LAPTrackerCostMatrixCreator | Contains the mutually shared fields and private functions used by the two cost matrix classes LinkingCostMatrixCreator and TrackSegmentCostMatrixCreator | Class | fiji.plugin.trackmate.tracking.oldlap.costmatrix | Fiji |
| LAPTrackerFactory | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji | |
| LAPUtils | Class | fiji.plugin.trackmate.tracking | Fiji | |
| LinkingCostFunction | Linking cost function used with LAPTracker. | Class | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
| LinkingCostMatrixCreator | Creates the cost matrix described in Figure 1b in the paper. | Class | fiji.plugin.trackmate.tracking.oldlap.costmatrix | Fiji |
| ManualTrackerFactory | Class | fiji.plugin.trackmate.tracking | Fiji | |
| MergingCostFunction | Merging cost function used with LAPTracker. | Class | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
| MunkresKuhnAlgorithm | This implements optimal matching between two sets given a weight matrix (where the goal is to minimize the cumulative weight of the matches). | Class | fiji.plugin.trackmate.tracking.oldlap.hungarian | Fiji |
| NearestNeighborFlagSearchOnKDTree | Class | fiji.plugin.trackmate.tracking.kdtree | Fiji | |
| NearestNeighborTracker | Class | fiji.plugin.trackmate.tracking.kdtree | Fiji | |
| NearestNeighborTrackerFactory | Class | fiji.plugin.trackmate.tracking.kdtree | Fiji | |
| ResizableDoubleArray | Class | fiji.plugin.trackmate.tracking.sparselap.costmatrix | Fiji | |
| SimpleFastLAPTrackerFactory | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji | |
| SimpleLAPTrackerFactory | Class | fiji.plugin.trackmate.tracking.oldlap | Fiji | |
| SimpleSparseLAPTrackerFactory | Class | fiji.plugin.trackmate.tracking.sparselap | Fiji | |
| SparseCostMatrix | A class to represent a sparse cost matrix. | Class | fiji.plugin.trackmate.tracking.sparselap.linker | Fiji |
| SparseLAPFrameToFrameTracker | Class | fiji.plugin.trackmate.tracking.sparselap | Fiji | |
| SparseLAPSegmentTracker | This class tracks deals with the second step of tracking according to the LAP tracking framework formulated by Jaqaman, K. | Class | fiji.plugin.trackmate.tracking.sparselap | Fiji |
| SparseLAPTracker | Class | fiji.plugin.trackmate.tracking.sparselap | Fiji | |
| SparseLAPTrackerFactory | Class | fiji.plugin.trackmate.tracking.sparselap | Fiji | |
| SplittingCostFunction | Splitting cost function used with LAPTracker. | Class | fiji.plugin.trackmate.tracking.oldlap.costfunction | Fiji |
| SpotTracker | This interface should be used when creating algorithms for linking objects across multiple frames in time-lapse images. | Interface | fiji.plugin.trackmate.tracking | Fiji |
| SpotTrackerFactory | Interface | fiji.plugin.trackmate.tracking | Fiji | |
| SquareDistCostFunction | A cost function that returns cost equal to the square distance. | Class | fiji.plugin.trackmate.tracking.sparselap.costfunction | Fiji |
| TrackerKeys | Class | fiji.plugin.trackmate.tracking | Fiji | |
| TrackSegmentCostMatrixCreator | Creates the cost matrix roughly described in Figure 1c in the paper: Jaqaman, K. | Class | fiji.plugin.trackmate.tracking.oldlap.costmatrix | Fiji |