#Htsjdk.samtools.cram.encoding.readfeatures Classes and Interfaces

_{#Htsjdk.samtools.cram.encoding.readfeatures Classes and Interfaces - 13 results found.}

Name	Description	Type	Package	Framework
BaseQualityScore	A read feature representing a single quality score in a read.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
Bases		Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
Deletion	A read feature representing a deletion of one or more bases similar to CigarOperator.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
HardClip	A read feature representing a hard clip similar to CigarOperator.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
InsertBase	A read feature representing a single insert base.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
Insertion	A read feature representing a multi-base insertion.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
Padding	A read feature representing padding, similar to CigarOperator.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
ReadBase	A read feature representing a single base with associated quality score.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
ReadFeature	An interface to capture data in read coordinates.	Interface	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
RefSkip	A read feature representing a reference skip similar to CigarOperator.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
Scores	A read feature representing a contiguous stretch of quality scores in a read.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
SoftClip	A read feature representing a soft clip similar to CigarOperator.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK
Substitution	A substitution event captured in read coordinates.	Class	htsjdk.samtools.cram.encoding.readfeatures	HtsJDK

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