Name | Description | Type | Package | Framework |
BitInputStream | An interface to describe the requirements for reading bit data as opposed to bytes. | Interface | htsjdk.samtools.cram.io | HtsJDK |
BitOutputStream | An interface to describe the requirements for writing out bits as opposed to bytes. | Interface | htsjdk.samtools.cram.io | HtsJDK |
CountingInputStream | An input stream that counts the bytes read from it. | Class | htsjdk.samtools.cram.io | HtsJDK |
CramArray | Methods to read and write CRAM array of integers data type. | Class | htsjdk.samtools.cram.io | HtsJDK |
CramInt | Methods to read and write CRAM int values as given in the file format specification. | Class | htsjdk.samtools.cram.io | HtsJDK |
CRC32InputStream | An input stream that calculates CRC32 of all the bytes passed through it. | Class | htsjdk.samtools.cram.io | HtsJDK |
CRC32OutputStream | An output stream that calculates CRC32 checksum of all the bytes written through the stream. | Class | htsjdk.samtools.cram.io | HtsJDK |
DefaultBitInputStream | Class | htsjdk.samtools.cram.io | HtsJDK | |
DefaultBitOutputStream | Class | htsjdk.samtools.cram.io | HtsJDK | |
ExposedByteArrayOutputStream | Class | htsjdk.samtools.cram.io | HtsJDK | |
ExternalCompression | Methods to provide CRAM external compression/decompression features. | Class | htsjdk.samtools.cram.io | HtsJDK |
InputStreamUtils | Convenience methods to read from InputStream. | Class | htsjdk.samtools.cram.io | HtsJDK |
ITF8 | Methods to read and write int values as per ITF8 specification in CRAM. | Class | htsjdk.samtools.cram.io | HtsJDK |
LTF8 | Methods to read and write LTF8 as per CRAM specs. | Class | htsjdk.samtools.cram.io | HtsJDK |