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#Htsjdk.samtools.cram.io Classes and Interfaces - 14 results found.
NameDescriptionTypePackageFramework
BitInputStreamAn interface to describe the requirements for reading bit data as opposed to bytes.Interfacehtsjdk.samtools.cram.ioHtsJDK
BitOutputStreamAn interface to describe the requirements for writing out bits as opposed to bytes.Interfacehtsjdk.samtools.cram.ioHtsJDK
CountingInputStreamAn input stream that counts the bytes read from it.Classhtsjdk.samtools.cram.ioHtsJDK
CramArrayMethods to read and write CRAM array of integers data type.Classhtsjdk.samtools.cram.ioHtsJDK
CramIntMethods to read and write CRAM int values as given in the file format specification.Classhtsjdk.samtools.cram.ioHtsJDK
CRC32InputStreamAn input stream that calculates CRC32 of all the bytes passed through it.Classhtsjdk.samtools.cram.ioHtsJDK
CRC32OutputStreamAn output stream that calculates CRC32 checksum of all the bytes written through the stream.Classhtsjdk.samtools.cram.ioHtsJDK
DefaultBitInputStreamClasshtsjdk.samtools.cram.ioHtsJDK
DefaultBitOutputStreamClasshtsjdk.samtools.cram.ioHtsJDK
ExposedByteArrayOutputStreamClasshtsjdk.samtools.cram.ioHtsJDK
ExternalCompressionMethods to provide CRAM external compression/decompression features.Classhtsjdk.samtools.cram.ioHtsJDK
InputStreamUtilsConvenience methods to read from InputStream.Classhtsjdk.samtools.cram.ioHtsJDK
ITF8Methods to read and write int values as per ITF8 specification in CRAM.Classhtsjdk.samtools.cram.ioHtsJDK
LTF8Methods to read and write LTF8 as per CRAM specs.Classhtsjdk.samtools.cram.ioHtsJDK