#Htsjdk.samtools.cram.structure Classes and Interfaces

_{#Htsjdk.samtools.cram.structure Classes and Interfaces - 16 results found.}

Name	Description	Type	Package	Framework
AlignmentSpan	A span of reads on a single reference.	Class	htsjdk.samtools.cram.structure	HtsJDK
Block	Class representing CRAM block concept and some methods to operate with block content.	Class	htsjdk.samtools.cram.structure	HtsJDK
BlockCompressionMethod	enum BlockCompressionMethodEnum Constant Summary	Class	htsjdk.samtools.cram.structure	HtsJDK
BlockContentType	enum BlockContentTypeEnum Constant Summary	Class	htsjdk.samtools.cram.structure	HtsJDK
CompressionHeader		Class	htsjdk.samtools.cram.structure	HtsJDK
Container		Class	htsjdk.samtools.cram.structure	HtsJDK
ContainerIO	Methods to read and write CRAM containers.	Class	htsjdk.samtools.cram.structure	HtsJDK
CramCompressionRecord		Class	htsjdk.samtools.cram.structure	HtsJDK
CramCompressionRecord .BAM_FLAGS		Class	htsjdk.samtools.cram.structure	HtsJDK
CramHeader	A starting object when dealing with CRAM files.	Class	htsjdk.samtools.cram.structure	HtsJDK
EncodingID	Encoding ID as defined in the CRAM specs.	Class	htsjdk.samtools.cram.structure	HtsJDK
EncodingKey		Class	htsjdk.samtools.cram.structure	HtsJDK
EncodingParams		Class	htsjdk.samtools.cram.structure	HtsJDK
ReadTag	CRAM counterpart of SAMTag.	Class	htsjdk.samtools.cram.structure	HtsJDK
Slice	CRAM slice is a logical union of blocks into for example alignment slices.	Class	htsjdk.samtools.cram.structure	HtsJDK
SubstitutionMatrix		Class	htsjdk.samtools.cram.structure	HtsJDK

Search Java Classes and Packages