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#Htsjdk.samtools.reference Classes and Interfaces - 7 results found.
| Name | Description | Type | Package | Framework |
| FastaSequenceFile | | Class | htsjdk.samtools.reference | HtsJDK |
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| FastaSequenceIndex | Reads a fasta index file (. | Class | htsjdk.samtools.reference | HtsJDK |
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| IndexedFastaSequenceFile | A fasta file driven by an index for fast, concurrent lookups. | Class | htsjdk.samtools.reference | HtsJDK |
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| ReferenceSequence | Wrapper around a reference sequence that has been read from a reference file. | Class | htsjdk.samtools.reference | HtsJDK |
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| ReferenceSequenceFile | An interface for working with files of reference sequences regardless of the file formatRetrieves the complete sequence described by this contig. | Interface | htsjdk.samtools.reference | HtsJDK |
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| ReferenceSequenceFileFactory | Factory class for creating ReferenceSequenceFile instances for reading reference sequences store in various formats. | Class | htsjdk.samtools.reference | HtsJDK |
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| ReferenceSequenceFileWalker | Manages a ReferenceSequenceFile. | Class | htsjdk.samtools.reference | HtsJDK |
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