#Htsjdk.samtools.sra Classes and Interfaces

_{#Htsjdk.samtools.sra Classes and Interfaces - 11 results found.}

Name	Description	Type	Package	Framework
ReferenceCache	That is a thread-safe wrapper for a list of cache Reference objects.	Class	htsjdk.samtools.sra	HtsJDK
SRAAccession	Describes a single SRA accession for SRA read collection Also provides app string functionality and allows to check if working SRA is supported on the running platform	Class	htsjdk.samtools.sra	HtsJDK
SRAAlignmentIterator	Iterator for aligned reads.	Class	htsjdk.samtools.sra	HtsJDK
SRAFileReader		Class	htsjdk.samtools	HtsJDK
SRAIndex	Emulates BAM index so that we can request chunks of records from SRAFileReader Here is how it works:	Class	htsjdk.samtools	HtsJDK
SRAIndexedSequenceFile		Class	htsjdk.samtools.sra	HtsJDK
SRAIterator		Class	htsjdk.samtools	HtsJDK
SRAIterator .RecordRangeInfo		Class	htsjdk.samtools	HtsJDK
SRALazyRecord	Since SRA is a column oriented database, it is very inefficient to load all the fields at once.	Class	htsjdk.samtools.sra	HtsJDK
SRAUnalignmentIterator	Iterator for unaligned reads.	Class	htsjdk.samtools.sra	HtsJDK
SRAUtils	Provides some functionality which can be used by other classes Created by andrii.	Class	htsjdk.samtools.sra	HtsJDK

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