Name | Description | Type | Package | Framework |
FTPHelper | Class | htsjdk.tribble.util | HtsJDK | |
HardyWeinbergCalculation | This class calculates a HardyWeinberg p-value given three values representing the observed frequences of homozygous and heterozygous genotypes in the | Class | htsjdk.tribble.util.popgen | HtsJDK |
HTTPHelper | Simple implementation of URLHelper based on the JDK URL and HttpURLConnection classes. | Class | htsjdk.tribble.util | HtsJDK |
LittleEndianInputStream | Input stream with methods to convert byte arrays to numeric values using "little endian" order. | Class | htsjdk.tribble.util | HtsJDK |
LittleEndianOutputStream | Class | htsjdk.tribble.util | HtsJDK | |
MathUtils | Class | htsjdk.tribble.util | HtsJDK | |
MathUtils .RunningStat | a class for calculating moving statistics - this class returns the mean, variance, and std dev after accumulating any number of records. | Class | htsjdk.tribble.util | HtsJDK |
ParsingUtils | Class | htsjdk.tribble.util | HtsJDK | |
RemoteURLHelper | Determines appropriate helper based on protocol (ftp/http), and then delegates. | Class | htsjdk.tribble.util | HtsJDK |
TabixUtils | Class | htsjdk.tribble.util | HtsJDK | |
TabixUtils .TIndex | Class | htsjdk.tribble.util | HtsJDK | |
TabixUtils .TIntv | Class | htsjdk.tribble.util | HtsJDK | |
TabixUtils .TPair64 | Class | htsjdk.tribble.util | HtsJDK | |
URLHelper | Interface defining a helper class for dealing with URL resources. | Interface | htsjdk.tribble.util | HtsJDK |