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#Htsjdk.variant.variantcontext.writer Classes and Interfaces - 31 results found.
NameDescriptionTypePackageFramework
AsyncVariantContextWriterAsyncVariantContextWriter that can be wrapped around an underlying AsyncVariantContextWriter to provide asynchronous output.Classhtsjdk.variant.variantcontext.writerHtsJDK
BCF2EncoderSee #BCFWriter for documentation on this classes role in encoding BCF2 filesSince:06/12Author:Mark DePristoClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldEncoderSee #BCFWriter for documentation on this classes role in encoding BCF2 filesSince:06/12Author:Mark DePristoClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldEncoder .AtomicIntClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldEncoder .FlagClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldEncoder .FloatClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldEncoder .GenericIntsClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldEncoder .IntArrayClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldEncoder .StringOrCharacterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriterSee #BCFWriter for documentation on this classes role in encoding BCF2 filesSince:06/12Author:Mark DePristoClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriter .FTGenotypesWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriter .GenericSiteWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriter .GenotypesWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriter .GTWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriter .IGFGenotypesWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriter .IntegerTypeGenotypesWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriter .SiteWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriter .StaticallyTypeGenotypesWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
BCF2FieldWriterManagerSee #BCFWriter for documentation on this classes role in encoding BCF2 filesSince:06/12Author:Mark DePristoClasshtsjdk.variant.variantcontext.writerHtsJDK
IntGenotypeFieldAccessorsA convenient way to provide a single view on the many int and int[] field values we work with, for writing out the values.Classhtsjdk.variant.variantcontext.writerHtsJDK
IntGenotypeFieldAccessors .AccessorClasshtsjdk.variant.variantcontext.writerHtsJDK
IntGenotypeFieldAccessors .ADAccessorClasshtsjdk.variant.variantcontext.writerHtsJDK
IntGenotypeFieldAccessors .DPAccessorClasshtsjdk.variant.variantcontext.writerHtsJDK
IntGenotypeFieldAccessors .GQAccessorClasshtsjdk.variant.variantcontext.writerHtsJDK
IntGenotypeFieldAccessors .PLAccessorClasshtsjdk.variant.variantcontext.writerHtsJDK
OptionsAvailable writer options for VariantContextWritersSince:5/12Author:Mark DePristoClasshtsjdk.variant.variantcontext.writerHtsJDK
SortingVariantContextWriterClasshtsjdk.variant.variantcontext.writerHtsJDK
VariantContextWriterthis class writes VCF filesattempt to close the VCF fileInterfacehtsjdk.variant.variantcontext.writerHtsJDK
VariantContextWriterBuilder Provides methods for creating VariantContextWriters using the Builder pattern.Classhtsjdk.variant.variantcontext.writerHtsJDK
VariantContextWriterBuilder .OutputTypeReturns the enum constant of this type with the specified name.Classhtsjdk.variant.variantcontext.writerHtsJDK
VariantContextWriterFactoryFactory methods to create VariantContext writersSince:5/12Author:depristoClasshtsjdk.variant.variantcontext.writerHtsJDK