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#Ini.trakem2 Classes and Interfaces - 256 results found.
NameDescriptionTypePackageFramework
AbstractOffscreenThreadTo be used in combination with the AbstractRepaintThread, as a thread to create graphics offscreen.Classini.trakem2.displayFiji
AbstractOffscreenThread .RepaintPropertiesInterfaceini.trakem2.display.AbstractOffscreenThreadFiji
AbstractRepaintThreadClassini.trakem2.displayFiji
AbstractTreeTransferHandlerAdapted from freely available code by DeuDeu from http://forum.Classini.trakem2.treeFiji
AddARGBCompositeClassini.trakem2.display.graphicsFiji
AffineTransformModeClassini.trakem2.displayFiji
AmiraImporterParses an amira labelfield and imports the labels as AreaList instances into the project tree.Classini.trakem2.ioFiji
AreaContainerInterfaceini.trakem2.displayFiji
AreaListA list of brush painted areas similar to a set of labelfields in Amira.Classini.trakem2.displayFiji
AreaTreeClassini.trakem2.displayFiji
AreaTree .AreaNodeClassini.trakem2.display.AreaTreeFiji
AreaUtilsClassini.trakem2.utilsFiji
AreaWrapperClassini.trakem2.displayFiji
AreaWrapper .PaintParametersClassini.trakem2.display.AreaWrapperFiji
BallClassini.trakem2.displayFiji
BigBrotherSupervise all threads, and report uncaught exceptions.Classini.trakem2.utilsFiji
BinaryInterpolation2DGiven two binary images of the same dimensions, generate an interpolated image that sits somewhereClassini.trakem2.imagingFiji
BlendingUtility functions for blending images together, to remove contrast seams.Classini.trakem2.imagingFiji
BucketA Bucket is a subarea of the Layer area, which contains either other Buckets or a map of stack_index vs.Classini.trakem2.displayFiji
BucketableInterfaceini.trakem2.displayFiji
BureaucratSets a Worker thread to work, and waits until it finishes, blocking all user interface input until then, except for zoom and pan, for all given projects.Classini.trakem2.utilsFiji
CacheAccess is not synchronized, that is your duty.Classini.trakem2.persistenceFiji
CachingThreadClassini.trakem2.utilsFiji
CentralityFollowing pseudo-code from: Ulrik Brandes.Classini.trakem2.analysisFiji
Centrality .EtchingStepAn entry of the number of remaining branch vertices versus the set of branches (each as a List>) removed.Classini.trakem2.analysis.CentralityFiji
ChannelClassini.trakem2.displayFiji
ContrastAdjustmentModeClassini.trakem2.displayFiji
ContrastEnhancerWrapperClassini.trakem2.imagingFiji
ContrastPlotCopied and modified from Wayne Rasband's ImageJ ContrastPlot inner class in ij.Classini.trakem2.imagingFiji
ControlClickBehaviorA class to provide the behavior on control-clicking oncontent in the 3D viewer.Classini.trakem2.display.d3dFiji
ControlWindowStatic class that shows one project per tab in a JFrame.Classini.trakem2Fiji
CoordinateClassini.trakem2.displayFiji
CoordinateTransformXMLClassini.trakem2.ioFiji
CorrectBackgroundClassini.trakem2.imaging.filtersFiji
CountingTaskFactoryClassini.trakem2.parallelFiji
DBLoaderClassini.trakem2.persistenceFiji
DBObjectBase class of all objects that can be saved in a database or XML file.Classini.trakem2.persistenceFiji
DefaultExecutorProviderDefault Executor Provider, which creates ExecutorServices from java.Classini.trakem2.parallelFiji
DefaultGraphicsSourceHandles default mode, i.Classini.trakem2.display.graphicsFiji
DefaultMinAndMaxSets the minimum to zero and the maximum to the maximum supported, or 255 for FloatProcessor and any other unknown ImageProcessor.Classini.trakem2.imaging.filtersFiji
DefaultModeClassini.trakem2.displayFiji
DefaultTreeTransferHandlerAdapted from freely available code by DeuDeu from http://forum.Classini.trakem2.treeFiji
DifferenceARGBCompositeClassini.trakem2.display.graphicsFiji
DispatcherClassini.trakem2.utilsFiji
Dispatcher .DispatcherThreadFactoryClassini.trakem2.utils.DispatcherFiji
DisplayA Display is a class to show a Layer and enable mouse and keyboard manipulation of all its components.Classini.trakem2.displayFiji
Display3DOne Display3D instance for each LayerSet (maximum).Classini.trakem2.displayFiji
Display3D .VectorStringContentClassini.trakem2.display.Display3DFiji
Display3DGUIClassini.trakem2.display.d3dFiji
DisplayableThe class that any element to be drawn on a Display must extend.Classini.trakem2.displayFiji
Displayable .DataPackageClassini.trakem2.display.DisplayableFiji
Displayable .DoEditFor any Displayable data, including: title, visible, locked, color, alpha, and a 'data' type which includes the actual data (points, areas, etc.Classini.trakem2.display.DisplayableFiji
Displayable .DoEditsClassini.trakem2.display.DisplayableFiji
Displayable .DoTransformsClassini.trakem2.display.DisplayableFiji
DisplayableChooserA class to be used when a click to select Displayable objects on the Display detects that there are more than one under the mouse cursor.Classini.trakem2.displayFiji
DisplayablePanelClassini.trakem2.displayFiji
DisplayCanvasClassini.trakem2.displayFiji
DisplayNavigatorClassini.trakem2.displayFiji
Dissector Each label is simply a cross marker with a number attached; labels are grouped; each member label of the group has the same number.Classini.trakem2.displayFiji
DLabelThis class is named funny to avoid confusion with java.Classini.trakem2.displayFiji
DNDInsertImageClassini.trakem2.utilsFiji
DNDTreeA JTree which has a built-in drag and drop feature.Classini.trakem2.treeFiji
DoStepInterfaceini.trakem2.displayFiji
DownsamplerMipMapsClassini.trakem2.persistenceFiji
DTDParserReads either a DOCTYPE chunk from an xml file or a .Classini.trakem2.treeFiji
EditionsTo extract and represent the sequence of editions that convert any N-dimensional vector string to any other of the same number of dimensions.Classini.trakem2.vectorFiji
Editions .ChunkClassini.trakem2.vector.EditionsFiji
EnhanceContrastUses the @{link ContrastEnhancer.Classini.trakem2.imaging.filtersFiji
EqualizeHistogramClassini.trakem2.imaging.filtersFiji
ExecutorProviderAllow the source ExecutorServices in TrakEM2 to be configured.Classini.trakem2.parallelFiji
FakeImagePlusNeed a non-null ImagePlus for the ImageCanvas, even if fake.Classini.trakem2.displayFiji
FakeImageWindowA class to prevent ROIs from failing.Classini.trakem2.displayFiji
FastIntegralImageWritten following the code in ImgLib1's IntegralImage2 and ScaleAreaAveraging2d, authored by Stephan Preibisch and Albert Cardona.Classini.trakem2.imagingFiji
FieldMapViewClasses extending this class acquire a read-only Map interface to access its declared fields via the reflection API provided by Class.Classini.trakem2.utilsFiji
FilePathRepairA class to manage "file not found" problems.Classini.trakem2.persistenceFiji
FilterInterfaceini.trakem2.utilsFiji
FilterEditorClassini.trakem2.imaging.filtersFiji
FloatProcessorT2Classini.trakem2.imagingFiji
FreeHandProfileClassini.trakem2.displayFiji
FSLoaderA class to rely on memory only; except images which are rolled from a folder or their original location and flushed when memory is needed for more.Classini.trakem2.persistenceFiji
GaussianBlurSmooth with a Gaussian.Classini.trakem2.imaging.filtersFiji
GraphClassini.trakem2.analysisFiji
GraphicsSourceInterfaceini.trakem2.display.graphicsFiji
GroupingModeClassini.trakem2.displayFiji
GroupingMode .PatchRangeClassini.trakem2.display.GroupingModeFiji
GroupingMode .ScreenPatchRangeClassini.trakem2.display.GroupingModeFiji
HistoryA class to represent a generic undo/redo history.Classini.trakem2.utilsFiji
History .StepInterfaceini.trakem2.utils.HistoryFiji
IFilterInterfaceini.trakem2.imaging.filtersFiji
IJErrorA class to easily show the stack trace of an error in different operating systems.Classini.trakem2.utilsFiji
ImageBytesRepresent an image with byte arrays: 2 channels: grey + alphaClassini.trakem2.persistenceFiji
ImageDataInterfaceini.trakem2.displayFiji
ImageFileFilterFilters out non-accepted image formats.Classini.trakem2.ioFiji
ImageFileHeaderClassini.trakem2.ioFiji
ImageJCommandListenerIntercept ImageJ menu commands if the current active image is a FakeImagePlus (from a ini.Classini.trakem2.displayFiji
ImagePreprocessorAny class implementing this interface is suitable as an image preprocessor for a TrakEM2 project.Interfaceini.trakem2.imagingFiji
ImageSaverProvides the necessary thread-safe image file saver utilities.Classini.trakem2.ioFiji
ImgLibVolumeThis class encapsulates an mpicbg.Classini.trakem2.utilsFiji
InspectPatchTrianglesModeA view-only mode that shows, using LayerSet.Classini.trakem2.display.inspectFiji
IntegerFieldClassini.trakem2.utilsFiji
IntegralHistogram2dAn integral histogram for 2d images.Classini.trakem2.imagingFiji
IntegralImageMipMapsClassini.trakem2.persistenceFiji
InvertClassini.trakem2.imaging.filtersFiji
LayerClassini.trakem2.displayFiji
Layer .DoMoveDisplayableClassini.trakem2.display.LayerFiji
LayerPanelClassini.trakem2.displayFiji
LayerSetA LayerSet is a container for a list of Layer.Classini.trakem2.displayFiji
LayerSet .DoChangeTreesRecords the state of the LayerSet.Classini.trakem2.display.LayerSetFiji
LayerSet .DoMoveZDisplayableClassini.trakem2.display.LayerSetFiji
LayerStackThis class represents an entire LayerSet of Patch objects only, as it is presented read-only to ImageJ.Classini.trakem2.imagingFiji
LayerThingClassini.trakem2.treeFiji
LayerTreeClassini.trakem2.treeFiji
LazyVirtualStackClassini.trakem2.imagingFiji
Line3DBy definition, only ZDisplayable objects may implement Line3D.Interfaceini.trakem2.displayFiji
LoaderHandle all data-related issues with a virtualization engine, including load/unload and saving, saving as and overwriting.Classini.trakem2.persistenceFiji
LockFor thread synchronization.Classini.trakem2.utilsFiji
LoggingInputStreamA class to monitor an input stream for speed and total byte download.Classini.trakem2.ioFiji
LUTBlueClassini.trakem2.imaging.filtersFiji
LUTCustomClassini.trakem2.imaging.filtersFiji
LUTCyanClassini.trakem2.imaging.filtersFiji
LUTGreenClassini.trakem2.imaging.filtersFiji
LUTMagentaClassini.trakem2.imaging.filtersFiji
LUTOrangeClassini.trakem2.imaging.filtersFiji
LUTRedClassini.trakem2.imaging.filtersFiji
LUTYellowClassini.trakem2.imaging.filtersFiji
MTrakEM2's mathematician.Classini.trakem2.utilsFiji
ManualAlignModeClassini.trakem2.displayFiji
MCCubeClassini.trakem2.utilsFiji
MCTriangulatorClassini.trakem2.utilsFiji
MergerClassini.trakem2.utilsFiji
MipMapImageA MipMap is a container for an Image and its corresponding inverse x/y scale relative to an original ImageClassini.trakem2.displayFiji
ModeInterfaceini.trakem2.displayFiji
MontageClassini.trakem2.utilsFiji
MultiplyARGBCompositeClassini.trakem2.display.graphicsFiji
NeuroMLClassini.trakem2.ioFiji
New_DB_ProjectClassini.trakem2Fiji
New_ProjectClassini.trakem2Fiji
NodeCan only have one parent, so there aren't cyclic graphs.Classini.trakem2.displayFiji
Node .BranchAndEndNodeIteratorClassini.trakem2.display.NodeFiji
Node .BranchNodeIteratorClassini.trakem2.display.NodeFiji
Node .BreadthFirstSubtreeIteratorFor a given starting node, iterates over the complete set of children nodes, recursively and breadth-first.Classini.trakem2.display.NodeFiji
Node .EndNodeIteratorClassini.trakem2.display.NodeFiji
Node .FilteredIteratorClassini.trakem2.display.NodeFiji
Node .NodeCollectionRead-only Collection with a very expensive size().Classini.trakem2.display.NodeFiji
Node .NodeIteratorStateful abstract Node iterator.Classini.trakem2.display.NodeFiji
Node .OperationAn operation to be applied to a specific Node.Interfaceini.trakem2.display.NodeFiji
Node .SlabIteratorFor a given starting node, iterates all the way to the next end node or branch node, inclusive.Classini.trakem2.display.NodeFiji
Node .SubtreeIteratorClassini.trakem2.display.NodeFiji
NonLinearTransformModeClassini.trakem2.displayFiji
NormalizeClassini.trakem2.imaging.filtersFiji
NormalizeLocalContrastClassini.trakem2.imaging.filtersFiji
Open_DB_ProjectClassini.trakem2Fiji
Open_ProjectClassini.trakem2Fiji
OperationInterfaceini.trakem2.utilsFiji
OptionPanelClassini.trakem2.utilsFiji
OptionPanel .BooleanSetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .ChoiceIntSetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .ChoiceObjectSetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .ChoiceStringSetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .DoubleSetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .FloatSetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .IntSetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .NumericalSetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .SetterClassini.trakem2.utils.OptionPanelFiji
OptionPanel .StringSetterClassini.trakem2.utils.OptionPanelFiji
OverlayClassini.trakem2.displayFiji
PClassini.trakem2.imagingFiji
PaintableInterfaceini.trakem2.displayFiji
ParallelMappingLike clojure's pmap, given a sequence of inputs obtained from an Iterable, this Iterable will apply a function to each input ahead of consumptionClassini.trakem2.parallelFiji
PatchClassini.trakem2.displayFiji
Patch .PatchImageClassini.trakem2.display.PatchFiji
Patch .TransformPropertiesClassini.trakem2.display.PatchFiji
PatchScriptClassini.trakem2.scriptingFiji
PatchStackAssumed is all Patch instances in the array are of the same size, live in consecutive layers of the same thickness.Classini.trakem2.imagingFiji
PhaseCorrelationCalculatorClassini.trakem2.imagingFiji
PipeClassini.trakem2.displayFiji
PolylineA sequence of points that make multiple chained line segments.Classini.trakem2.displayFiji
ProcessFor all methods, if the number of processors given as argument is zero or larger than the maximum available plus 2, the number of processors will be adjusted to fall within the range [1, max+2].Classini.trakem2.parallelFiji
ProfileA class to be a user-outlined profile over an image, which is painted with a particular color and also holds an associated text label.Classini.trakem2.displayFiji
ProjectThe top-level class in control.Classini.trakem2Fiji
ProjectThingClassini.trakem2.treeFiji
ProjectTilerClassini.trakem2.persistenceFiji
ProjectToolbarClassini.trakem2.utilsFiji
ProjectTreeA class to hold a tree of Thing nodesSee Also:Serialized FormClassini.trakem2.treeFiji
RagMipMapsLike RawMipMaps, but the alpha channel is compressed with GZIP.Classini.trakem2.ioFiji
RankFilterClassini.trakem2.imaging.filtersFiji
RawMipMapsClassini.trakem2.ioFiji
ReconstructAreaReconstruct an Area from a list of XML Classini.trakem2.displayFiji
ZDisplayableFor Pipes and other objects that must be shown in all Layers of a LayerSet.Classini.trakem2.displayFiji