Name | Description | Type | Package | Framework |
BinaryInterpolation2D | Given two binary images of the same dimensions, generate an interpolated image that sits somewhere | Class | ini.trakem2.imaging | Fiji |
Blending | Utility functions for blending images together, to remove contrast seams. | Class | ini.trakem2.imaging | Fiji |
ContrastEnhancerWrapper | Class | ini.trakem2.imaging | Fiji | |
ContrastPlot | Copied and modified from Wayne Rasband's ImageJ ContrastPlot inner class in ij. | Class | ini.trakem2.imaging | Fiji |
CorrectBackground | Class | ini.trakem2.imaging.filters | Fiji | |
DefaultMinAndMax | Sets the minimum to zero and the maximum to the maximum supported, or 255 for FloatProcessor and any other unknown ImageProcessor. | Class | ini.trakem2.imaging.filters | Fiji |
EnhanceContrast | Uses the @{link ContrastEnhancer. | Class | ini.trakem2.imaging.filters | Fiji |
EqualizeHistogram | Class | ini.trakem2.imaging.filters | Fiji | |
FastIntegralImage | Written following the code in ImgLib1's IntegralImage2 and ScaleAreaAveraging2d, authored by Stephan Preibisch and Albert Cardona. | Class | ini.trakem2.imaging | Fiji |
FilterEditor | Class | ini.trakem2.imaging.filters | Fiji | |
FloatProcessorT2 | Class | ini.trakem2.imaging | Fiji | |
GaussianBlur | Smooth with a Gaussian. | Class | ini.trakem2.imaging.filters | Fiji |
IFilter | Interface | ini.trakem2.imaging.filters | Fiji | |
ImagePreprocessor | Any class implementing this interface is suitable as an image preprocessor for a TrakEM2 project. | Interface | ini.trakem2.imaging | Fiji |
IntegralHistogram2d | An integral histogram for 2d images. | Class | ini.trakem2.imaging | Fiji |
Invert | Class | ini.trakem2.imaging.filters | Fiji | |
LayerStack | This class represents an entire LayerSet of Patch objects only, as it is presented read-only to ImageJ. | Class | ini.trakem2.imaging | Fiji |
LazyVirtualStack | Class | ini.trakem2.imaging | Fiji | |
LUTBlue | Class | ini.trakem2.imaging.filters | Fiji | |
LUTCustom | Class | ini.trakem2.imaging.filters | Fiji | |
LUTCyan | Class | ini.trakem2.imaging.filters | Fiji | |
LUTGreen | Class | ini.trakem2.imaging.filters | Fiji | |
LUTMagenta | Class | ini.trakem2.imaging.filters | Fiji | |
LUTOrange | Class | ini.trakem2.imaging.filters | Fiji | |
LUTRed | Class | ini.trakem2.imaging.filters | Fiji | |
LUTYellow | Class | ini.trakem2.imaging.filters | Fiji | |
Normalize | Class | ini.trakem2.imaging.filters | Fiji | |
NormalizeLocalContrast | Class | ini.trakem2.imaging.filters | Fiji | |
P | Class | ini.trakem2.imaging | Fiji | |
PatchStack | Assumed is all Patch instances in the array are of the same size, live in consecutive layers of the same thickness. | Class | ini.trakem2.imaging | Fiji |
PhaseCorrelationCalculator | Class | ini.trakem2.imaging | Fiji | |
RankFilter | Class | ini.trakem2.imaging.filters | Fiji | |
ResetMinAndMax | Class | ini.trakem2.imaging.filters | Fiji | |
RobustNormalizeLocalContrast | Class | ini.trakem2.imaging.filters | Fiji | |
Segmentation | Class | ini.trakem2.imaging | Fiji | |
Segmentation .BlowCommander | Class | ini.trakem2.imaging.Segmentation | Fiji | |
Segmentation .BlowRunner | Class | ini.trakem2.imaging.Segmentation | Fiji | |
Segmentation .FastMarchingParam | Class | ini.trakem2.imaging.Segmentation | Fiji | |
StitchingTEM | - known percent overlap This class will attempt to find the optimal montage, | Class | ini.trakem2.imaging | Fiji |
StitchingTEM .PhaseCorrelationParam | Class | ini.trakem2.imaging.StitchingTEM | Fiji | |
SubtractBackground | Subtract background with the rolling-ball algorithm. | Class | ini.trakem2.imaging.filters | Fiji |
ValueToNoise | Class | ini.trakem2.imaging.filters | Fiji | |