| Name | Description | Type | Package | Framework |
| AbstractSequenceDescription | A SPIM sequence consisting of a list of timepoints and a list of view setups. | Class | mpicbg.spim.data.generic.sequence | Fiji |
| AbstractSequenceDescriptionUtils | Class | mpicbg.spim.data.generic.sequence | Fiji | |
| AbstractSpimData | Class | mpicbg.spim.data.generic | Fiji | |
| Angle | Defines an angle which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
| BasicImgLoader | Provides images for a sequence. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
| BasicMultiResolutionImgLoader | A BasicImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
| BasicMultiResolutionSetupImgLoader | A BasicSetupImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
| BasicSetupImgLoader | Provides images for one setup of aAuthor:Tobias Pietzsch | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
| BasicViewDescription | Class | mpicbg.spim.data.generic.sequence | Fiji | |
| BasicViewSetup | An view setup is an Entity that may have a name, image size, and voxel size. | Class | mpicbg.spim.data.generic.sequence | Fiji |
| BoundedTypeBasicImgLoader | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
| Channel | Defines a channel which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
| Entity | Something that has a unique id. | Class | mpicbg.spim.data.generic.base | Fiji |
| EntityUtils | Class | mpicbg.spim.data.generic.base | Fiji | |
| FinalVoxelDimensions | An implementation of VoxelDimensions. | Class | mpicbg.spim.data.sequence | Fiji |
| Illumination | Defines an illumination direction which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
| ImgLoader | A BasicImgLoader that is able to also provide each image converted to FloatType. | Interface | mpicbg.spim.data.sequence | Fiji |
| ImgLoaderHint | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
| ImgLoaderHints | Default set of ImgLoaderHint. | Class | mpicbg.spim.data.generic.sequence | Fiji |
| ImgLoaderIo | Annotation for a class that creates a BasicImgLoader for a specific format (the format is specified in the XML "ImageLoader" element). | Class | mpicbg.spim.data.generic.sequence | Fiji |
| ImgLoaders | Class | mpicbg.spim.data.generic.sequence | Fiji | |
| IntegerPattern | Class with static methods to deal with integer patterns defining ranges of numbers and create String instances based on simple expressions like {aaa} or {t}. | Class | mpicbg.spim.data.sequence | Fiji |
| LegacyBasicImgLoader | Interface | mpicbg.spim.data.legacy | Fiji | |
| LegacyBasicImgLoaderWrapper | Class | mpicbg.spim.data.legacy | Fiji | |
| LegacyImgLoader | Interface | mpicbg.spim.data.legacy | Fiji | |
| LegacyImgLoaderWrapper | Class | mpicbg.spim.data.legacy | Fiji | |
| MissingViews | Class | mpicbg.spim.data.sequence | Fiji | |
| MultiResolutionImgLoader | An ImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.sequence | Fiji |
| MultiResolutionSetupImgLoader | A SetupImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.sequence | Fiji |
| NamedEntity | An Entity that has a name. | Class | mpicbg.spim.data.generic.base | Fiji |
| SequenceDescription | Class | mpicbg.spim.data.sequence | Fiji | |
| SetupImgLoader | A BasicSetupImgLoader that is able to also provide each image converted to FloatType. | Interface | mpicbg.spim.data.sequence | Fiji |
| SpimData | Class | mpicbg.spim.data | Fiji | |
| SpimDataExample | Class | mpicbg.spim.data | Fiji | |
| SpimDataExample2 | The methods exampleViewSetups(), exampleTimePoints(), exampleViewRegistrations(), and | Class | mpicbg.spim.data | Fiji |
| SpimDataException | Class | mpicbg.spim.data | Fiji | |
| SpimDataInstantiationException | This exception is thrown when SpimData entities cannot be constructed (whileAuthor:Tobias Pietzsch | Class | mpicbg.spim.data | Fiji | |
| SpimDataIOException | This exception is thrown when an IO error occurs while reading or writing anAuthor:Tobias Pietzsch | Class | mpicbg.spim.data | Fiji | |
| TimePoint | Class | mpicbg.spim.data.sequence | Fiji | |
| TimePoints | Class | mpicbg.spim.data.sequence | Fiji | |
| TimePointsPattern | Class | mpicbg.spim.data.sequence | Fiji | |
| TypedBasicImgLoader | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
| Version | Class | mpicbg.spim.data | Fiji | |
| ViewDescription | Class | mpicbg.spim.data.sequence | Fiji | |
| ViewId | Identifies a particular view as a combination of a TimePoint id and aAuthor:Tobias Pietzsch | Class | mpicbg.spim.data.sequence | Fiji | |
| ViewIdUtils | Class | mpicbg.spim.data.sequence | Fiji | |
| ViewRegistration | Class | mpicbg.spim.data.registration | Fiji | |
| ViewRegistrations | Only contains a Map from ViewId to ViewRegistrationAuthor:Tobias Pietzsch | Class | mpicbg.spim.data.registration | Fiji | |
| ViewRegistrationsUtils | Class | mpicbg.spim.data.registration | Fiji | |
| ViewSetup | A collection of parameters describing the setup for a particular stack coming from a SPIM microscope (angle, illumination direction, etc). | Class | mpicbg.spim.data.sequence | Fiji |
| ViewSetupAttributeIo | Class | mpicbg.spim.data.generic.base | Fiji | |
| ViewSetupAttributes | Class | mpicbg.spim.data.generic.base | Fiji | |
| ViewSetups | Helper methods for dealing with ViewSetup collections. | Class | mpicbg.spim.data.sequence | Fiji |
| ViewTransform | Interface | mpicbg.spim.data.registration | Fiji | |
| ViewTransformAffine | Class | mpicbg.spim.data.registration | Fiji | |
| ViewTransformGeneric | Interface | mpicbg.spim.data.registration | Fiji | |
| VoxelDimensions | Interface | mpicbg.spim.data.sequence | Fiji | |
| XmlHelpers | Class | mpicbg.spim.data | Fiji | |
| XmlIoAbstractSequenceDescription | Class | mpicbg.spim.data.generic.sequence | Fiji | |
| XmlIoAbstractSpimData | Class | mpicbg.spim.data.generic | Fiji | |
| XmlIoAngle | Class | mpicbg.spim.data.sequence | Fiji | |
| XmlIoBasicImgLoader | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
| XmlIoBasicViewSetup | Class | mpicbg.spim.data.generic.sequence | Fiji | |
| XmlIoBasicViewSetups | Writes and reads collections of a specific BasicViewSetup subclass as an XML section. | Class | mpicbg.spim.data.generic.sequence | Fiji |
| XmlIoChannel | Class | mpicbg.spim.data.sequence | Fiji | |
| XmlIoEntity | Writes and reads objects of a specific subclass of Entity as XML When reading/writing an object, XmlIoEntity takes care of the | Class | mpicbg.spim.data.generic.base | Fiji |
| XmlIoEntityMap | Writes and reads collections of a specific Entity subclass as an XML section. | Class | mpicbg.spim.data.generic.base | Fiji |
| XmlIoIllumination | Class | mpicbg.spim.data.sequence | Fiji | |
| XmlIoMissingViews | Class | mpicbg.spim.data.sequence | Fiji | |
| XmlIoNamedEntity | XmlIoEntity for NamedEntity that also handles <>Author:Tobias Pietzsch | Class | mpicbg.spim.data.generic.base | Fiji | |
| XmlIoSequenceDescription | Class | mpicbg.spim.data.sequence | Fiji | |
| XmlIoSingleton | Writes and reads objects of a specific class as XML elements. | Class | mpicbg.spim.data.generic.base | Fiji |
| XmlIoSpimData | Class | mpicbg.spim.data | Fiji | |
| XmlIoTimePoints | Class | mpicbg.spim.data.sequence | Fiji | |
| XmlIoViewRegistration | Class | mpicbg.spim.data.registration | Fiji | |
| XmlIoViewRegistrations | Class | mpicbg.spim.data.registration | Fiji | |
| XmlIoViewSetups | Class | mpicbg.spim.data.sequence | Fiji | |
| XmlIoViewTransform | Class | mpicbg.spim.data.registration | Fiji | |
| XmlKeys | Definition of tag and attribute names. | Class | mpicbg.spim.data | Fiji |