Name | Description | Type | Package | Framework |
AbstractSequenceDescription | A SPIM sequence consisting of a list of timepoints and a list of view setups. | Class | mpicbg.spim.data.generic.sequence | Fiji |
AbstractSequenceDescriptionUtils | Class | mpicbg.spim.data.generic.sequence | Fiji | |
AbstractSpimData | Class | mpicbg.spim.data.generic | Fiji | |
Angle | Defines an angle which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
BasicImgLoader | Provides images for a sequence. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
BasicMultiResolutionImgLoader | A BasicImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
BasicMultiResolutionSetupImgLoader | A BasicSetupImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.generic.sequence | Fiji |
BasicSetupImgLoader | Provides images for one setup of aAuthor:Tobias Pietzsch Interface | mpicbg.spim.data.generic.sequence | Fiji | |
BasicViewDescription | Class | mpicbg.spim.data.generic.sequence | Fiji | |
BasicViewSetup | An view setup is an Entity that may have a name, image size, and voxel size. | Class | mpicbg.spim.data.generic.sequence | Fiji |
BoundedTypeBasicImgLoader | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
Channel | Defines a channel which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
Entity | Something that has a unique id. | Class | mpicbg.spim.data.generic.base | Fiji |
EntityUtils | Class | mpicbg.spim.data.generic.base | Fiji | |
FinalVoxelDimensions | An implementation of VoxelDimensions. | Class | mpicbg.spim.data.sequence | Fiji |
Illumination | Defines an illumination direction which is part of the ViewSetup. | Class | mpicbg.spim.data.sequence | Fiji |
ImgLoader | A BasicImgLoader that is able to also provide each image converted to FloatType. | Interface | mpicbg.spim.data.sequence | Fiji |
ImgLoaderHint | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
ImgLoaderHints | Default set of ImgLoaderHint. | Class | mpicbg.spim.data.generic.sequence | Fiji |
ImgLoaderIo | Annotation for a class that creates a BasicImgLoader for a specific format (the format is specified in the XML "ImageLoader" element). | Class | mpicbg.spim.data.generic.sequence | Fiji |
ImgLoaders | Class | mpicbg.spim.data.generic.sequence | Fiji | |
IntegerPattern | Class with static methods to deal with integer patterns defining ranges of numbers and create String instances based on simple expressions like {aaa} or {t}. | Class | mpicbg.spim.data.sequence | Fiji |
LegacyBasicImgLoader | Interface | mpicbg.spim.data.legacy | Fiji | |
LegacyBasicImgLoaderWrapper | Class | mpicbg.spim.data.legacy | Fiji | |
LegacyImgLoader | Interface | mpicbg.spim.data.legacy | Fiji | |
LegacyImgLoaderWrapper | Class | mpicbg.spim.data.legacy | Fiji | |
MissingViews | Class | mpicbg.spim.data.sequence | Fiji | |
MultiResolutionImgLoader | An ImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.sequence | Fiji |
MultiResolutionSetupImgLoader | A SetupImgLoader providing multiple resolutions of each image. | Interface | mpicbg.spim.data.sequence | Fiji |
NamedEntity | An Entity that has a name. | Class | mpicbg.spim.data.generic.base | Fiji |
SequenceDescription | Class | mpicbg.spim.data.sequence | Fiji | |
SetupImgLoader | A BasicSetupImgLoader that is able to also provide each image converted to FloatType. | Interface | mpicbg.spim.data.sequence | Fiji |
SpimData | Class | mpicbg.spim.data | Fiji | |
SpimDataExample | Class | mpicbg.spim.data | Fiji | |
SpimDataExample2 | The methods exampleViewSetups(), exampleTimePoints(), exampleViewRegistrations(), and | Class | mpicbg.spim.data | Fiji |
SpimDataException | Class | mpicbg.spim.data | Fiji | |
SpimDataInstantiationException | This exception is thrown when SpimData entities cannot be constructed (whileAuthor:Tobias Pietzsch Class | mpicbg.spim.data | Fiji | |
SpimDataIOException | This exception is thrown when an IO error occurs while reading or writing anAuthor:Tobias Pietzsch Class | mpicbg.spim.data | Fiji | |
TimePoint | Class | mpicbg.spim.data.sequence | Fiji | |
TimePoints | Class | mpicbg.spim.data.sequence | Fiji | |
TimePointsPattern | Class | mpicbg.spim.data.sequence | Fiji | |
TypedBasicImgLoader | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
Version | Class | mpicbg.spim.data | Fiji | |
ViewDescription | Class | mpicbg.spim.data.sequence | Fiji | |
ViewId | Identifies a particular view as a combination of a TimePoint id and aAuthor:Tobias Pietzsch Class | mpicbg.spim.data.sequence | Fiji | |
ViewIdUtils | Class | mpicbg.spim.data.sequence | Fiji | |
ViewRegistration | Class | mpicbg.spim.data.registration | Fiji | |
ViewRegistrations | Only contains a Map from ViewId to ViewRegistrationAuthor:Tobias Pietzsch Class | mpicbg.spim.data.registration | Fiji | |
ViewRegistrationsUtils | Class | mpicbg.spim.data.registration | Fiji | |
ViewSetup | A collection of parameters describing the setup for a particular stack coming from a SPIM microscope (angle, illumination direction, etc). | Class | mpicbg.spim.data.sequence | Fiji |
ViewSetupAttributeIo | Class | mpicbg.spim.data.generic.base | Fiji | |
ViewSetupAttributes | Class | mpicbg.spim.data.generic.base | Fiji | |
ViewSetups | Helper methods for dealing with ViewSetup collections. | Class | mpicbg.spim.data.sequence | Fiji |
ViewTransform | Interface | mpicbg.spim.data.registration | Fiji | |
ViewTransformAffine | Class | mpicbg.spim.data.registration | Fiji | |
ViewTransformGeneric | Interface | mpicbg.spim.data.registration | Fiji | |
VoxelDimensions | Interface | mpicbg.spim.data.sequence | Fiji | |
XmlHelpers | Class | mpicbg.spim.data | Fiji | |
XmlIoAbstractSequenceDescription | Class | mpicbg.spim.data.generic.sequence | Fiji | |
XmlIoAbstractSpimData | Class | mpicbg.spim.data.generic | Fiji | |
XmlIoAngle | Class | mpicbg.spim.data.sequence | Fiji | |
XmlIoBasicImgLoader | Interface | mpicbg.spim.data.generic.sequence | Fiji | |
XmlIoBasicViewSetup | Class | mpicbg.spim.data.generic.sequence | Fiji | |
XmlIoBasicViewSetups | Writes and reads collections of a specific BasicViewSetup subclass as an XML section. | Class | mpicbg.spim.data.generic.sequence | Fiji |
XmlIoChannel | Class | mpicbg.spim.data.sequence | Fiji | |
XmlIoEntity | Writes and reads objects of a specific subclass of Entity as XML When reading/writing an object, XmlIoEntity takes care of the | Class | mpicbg.spim.data.generic.base | Fiji |
XmlIoEntityMap | Writes and reads collections of a specific Entity subclass as an XML section. | Class | mpicbg.spim.data.generic.base | Fiji |
XmlIoIllumination | Class | mpicbg.spim.data.sequence | Fiji | |
XmlIoMissingViews | Class | mpicbg.spim.data.sequence | Fiji | |
XmlIoNamedEntity | XmlIoEntity for NamedEntity that also handles <>Author:Tobias Pietzsch Class | mpicbg.spim.data.generic.base | Fiji | |
XmlIoSequenceDescription | Class | mpicbg.spim.data.sequence | Fiji | |
XmlIoSingleton | Writes and reads objects of a specific class as XML elements. | Class | mpicbg.spim.data.generic.base | Fiji |
XmlIoSpimData | Class | mpicbg.spim.data | Fiji | |
XmlIoTimePoints | Class | mpicbg.spim.data.sequence | Fiji | |
XmlIoViewRegistration | Class | mpicbg.spim.data.registration | Fiji | |
XmlIoViewRegistrations | Class | mpicbg.spim.data.registration | Fiji | |
XmlIoViewSetups | Class | mpicbg.spim.data.sequence | Fiji | |
XmlIoViewTransform | Class | mpicbg.spim.data.registration | Fiji | |
XmlKeys | Definition of tag and attribute names. | Class | mpicbg.spim.data | Fiji |