| Name | Description | Type | Package | Framework |
| AbstractDetection | Class | mpicbg.spim.registration.detection | Fiji | |
| Bead | Class | mpicbg.spim.registration.bead | Fiji | |
| BeadIdentification | Class | mpicbg.spim.registration.bead | Fiji | |
| BeadRegistration | Class | mpicbg.spim.registration.bead | Fiji | |
| BeadSegmentation | Class | mpicbg.spim.registration.bead | Fiji | |
| BeadStructure | Class | mpicbg.spim.registration.bead | Fiji | |
| CoordSystem3d | Class | mpicbg.spim.registration.detection.descriptor | Fiji | |
| CoordSystemSecure3d | Class | mpicbg.spim.registration.detection.descriptor | Fiji | |
| CorrespondenceExtraction | Interface | mpicbg.spim.registration.detection.descriptor | Fiji | |
| Detection | Class | mpicbg.spim.registration.detection | Fiji | |
| DetectionIdentification | The DetectionIdentification object stores the link (via ID) to an Detection-object and not an actual instance, but a link to the ViewDataBeads object where it belongs to. | Class | mpicbg.spim.registration.detection | Fiji |
| DetectionRegistration | Class | mpicbg.spim.registration.detection | Fiji | |
| DetectionSegmentation | Class | mpicbg.spim.registration.detection | Fiji | |
| DetectionStructure | Class | mpicbg.spim.registration.detection | Fiji | |
| DetectionView | Class | mpicbg.spim.registration.detection | Fiji | |
| DoGMaximum | Class | mpicbg.spim.registration.bead.laplace | Fiji | |
| GlobalErrorStatistics | Interface | mpicbg.spim.registration.bead.error | Fiji | |
| GlobalErrorStatisticsImpl | Class | mpicbg.spim.registration.bead.error | Fiji | |
| LaPlaceFunctions | Class | mpicbg.spim.registration.bead.laplace | Fiji | |
| ModelBased3d | Class | mpicbg.spim.registration.detection.descriptor | Fiji | |
| NucleiConfiguration | Class | mpicbg.spim.registration.segmentation | Fiji | |
| NucleiConfiguration .RotationAxis | Class | mpicbg.spim.registration.segmentation.NucleiConfiguration | Fiji | |
| Nucleus | Class | mpicbg.spim.registration.segmentation | Fiji | |
| NucleusIdentification | The BeadIdentification object stores the link (via ID) to an Bead-object and not an actual instance, but a link to the ViewDataBeads object where it belongs to. | Class | mpicbg.spim.registration.segmentation | Fiji |
| NucleusStructure | Class | mpicbg.spim.registration.segmentation | Fiji | |
| RejectStatistics | Class | mpicbg.spim.registration.bead.laplace | Fiji | |
| SegmentationBenchmark | Class | mpicbg.spim.registration.bead | Fiji | |
| SparseCorrespondenceExtraction | Class | mpicbg.spim.registration.detection.descriptor | Fiji | |
| ViewDataBeads | Class | mpicbg.spim.registration | Fiji | |
| ViewErrorPairWise | Class | mpicbg.spim.registration.bead.error | Fiji | |
| ViewErrorStatistics | This class handles View-specific error analysis. | Class | mpicbg.spim.registration.bead.error | Fiji |
| ViewStructure | This class stores the links to all Views and initializes the View-dependent error statisticsAuthor:Stephan Preibisch | Class | mpicbg.spim.registration | Fiji |