Name | Description | Type | Package | Framework |
AminoAcidComposition | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
AminoAcidCompositionTable | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
CaseFreeAminoAcidCompoundSet | Set of proteinogenic amino acids. | Class | org.biojava.nbio.aaproperties.xml | BioJava |
CommandPrompt | Class | org.biojava.nbio.aaproperties | BioJava | |
CommandPrompt .PropertyName | Class | org.biojava.nbio.aaproperties | BioJava | |
Constraints | This class is used to support the implementation of properties stated in IPeptideProperties. | Class | org.biojava.nbio.aaproperties | BioJava |
Convert2Charge | Class | org.biojava.nbio.aaproperties.profeat.convertor | BioJava | |
Convert2Hydrophobicity | Class | org.biojava.nbio.aaproperties.profeat.convertor | BioJava | |
Convert2NormalizedVanDerWaalsVolume | Class | org.biojava.nbio.aaproperties.profeat.convertor | BioJava | |
Convert2Polarity | Class | org.biojava.nbio.aaproperties.profeat.convertor | BioJava | |
Convert2Polarizability | Class | org.biojava.nbio.aaproperties.profeat.convertor | BioJava | |
Convert2SecondaryStructure | Class | org.biojava.nbio.aaproperties.profeat.convertor | BioJava | |
Convert2SolventAccessibility | Class | org.biojava.nbio.aaproperties.profeat.convertor | BioJava | |
Convertor | Class | org.biojava.nbio.aaproperties.profeat.convertor | BioJava | |
Element | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
ElementTable | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
IPeptideProperties | An interface to generate some basic physico-chemical properties of protein sequences. | Interface | org.biojava.nbio.aaproperties | BioJava |
IProfeatProperties | Interface | org.biojava.nbio.aaproperties.profeat | BioJava | |
IProfeatProperties .ATTRIBUTE | Class | org.biojava.nbio.aaproperties.profeat | BioJava | |
IProfeatProperties .DISTRIBUTION | Class | org.biojava.nbio.aaproperties.profeat | BioJava | |
IProfeatProperties .GROUPING | Class | org.biojava.nbio.aaproperties.profeat | BioJava | |
IProfeatProperties .TRANSITION | Class | org.biojava.nbio.aaproperties.profeat | BioJava | |
Isotope | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
ModifiedAminoAcidCompoundSet | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
MyValidationEventHandler | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
Name2Count | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
PeptideProperties | This is an adaptor class which enable the ease of generating protein properties. | Class | org.biojava.nbio.aaproperties | BioJava |
PeptideProperties .SingleLetterAACode | Class | org.biojava.nbio.aaproperties | BioJava | |
PeptidePropertiesImpl | This class contains the actual implementation of IPeptideProperties and is wrapped around by PeptideProperties for ease of use. | Class | org.biojava.nbio.aaproperties | BioJava |
ProfeatProperties | This is an adaptor class which enable the ease of generating profeat properties. | Class | org.biojava.nbio.aaproperties.profeat | BioJava |
ProfeatPropertiesImpl | Class | org.biojava.nbio.aaproperties.profeat | BioJava | |
SchemaGenerator | Class | org.biojava.nbio.aaproperties.xml | BioJava | |
Utils | This is a utility class that contains utility methods which will facilitates the coding of other methodsSince:3. | Class | org.biojava.nbio.aaproperties | BioJava |