#Org.biojava.nbio.alignment.routines Classes and Interfaces

_{#Org.biojava.nbio.alignment.routines Classes and Interfaces - 8 results found.}

Name	Description	Type	Package	Framework
AlignerHelper	Static utility to construct alignment routines from a common library of methods.	Class	org.biojava.nbio.alignment.routines	BioJava
AlignerHelper .Anchor	Compounds in query and target sequences that must alignAuthor:Daniel Cameron	Class	org.biojava.nbio.alignment.routines	BioJava
AlignerHelper .Anchor .QueryIndexComparator		Class	org.biojava.nbio.alignment.routines	BioJava
AlignerHelper .Cut	Defines a 'cut' row for divide-and-conquer alignment in which a new anchor is found.	Class	org.biojava.nbio.alignment.routines	BioJava
AlignerHelper .Last	Define a traceback pointer for the three edit operations: substitution (match/replacement of a query compound with a target compound), deletion (removal of a query compound leaving a gap in the target sequence), and	Class	org.biojava.nbio.alignment.routines	BioJava
AlignerHelper .Subproblem	Alignment subproblem.	Class	org.biojava.nbio.alignment.routines	BioJava
AnchoredPairwiseSequenceAligner	This algorithm uses a divide-and-conquer approach to find optimal pairwise global sequence alignments (from the first until the last Compound of each Sequence) with the restriction that any alignment produced	Class	org.biojava.nbio.alignment.routines	BioJava
GuanUberbacher	Guan and Uberbacher defined an algorithm for pairwise global sequence alignments (from the first until the last Compound of each Sequence).	Class	org.biojava.nbio.alignment.routines	BioJava

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