Search Java Classes and Packages
#Org.biojava.nbio.alignment.template Classes and Interfaces - 21 results found.
| Name | Description | Type | Package | Framework |
| AbstractMatrixAligner | Class | org.biojava.nbio.alignment.template | BioJava | |
| AbstractPairwiseSequenceAligner | Class | org.biojava.nbio.alignment.template | BioJava | |
| AbstractProfileProfileAligner | Class | org.biojava.nbio.alignment.template | BioJava | |
| AbstractScorer | Class | org.biojava.nbio.alignment.template | BioJava | |
| Aligner | Defines an algorithm which computes an alignment Profile from a list of Sequences. | Interface | org.biojava.nbio.alignment.template | BioJava |
| CallablePairwiseSequenceAligner | Class | org.biojava.nbio.alignment.template | BioJava | |
| CallablePairwiseSequenceScorer | Class | org.biojava.nbio.alignment.template | BioJava | |
| CallableProfileProfileAligner | Class | org.biojava.nbio.alignment.template | BioJava | |
| GapPenalty | Defines a data structure for the gap penalties used during a sequence alignment routine. | Interface | org.biojava.nbio.alignment.template | BioJava |
| GapPenalty .Type | Defines the possible types of gap penalties. | Class | org.biojava.nbio.alignment.template | BioJava |
| GuideTreeNode | Defines a data structure for the node in a guide tree used during progressive multiple sequence alignment. | Interface | org.biojava.nbio.alignment.template | BioJava |
| HierarchicalClusterer | Defines a clustering algorithm that converts a distance matrix into a tree. | Interface | org.biojava.nbio.alignment.template | BioJava |
| MatrixAligner | Defines an Aligner which builds a score matrix during computation. | Interface | org.biojava.nbio.alignment.template | BioJava |
| PairInProfileScorer | Defines an algorithm which computes a score for a sequence alignment pair picked from an alignment Profile. | Interface | org.biojava.nbio.alignment.template | BioJava |
| PairwiseSequenceAligner | Defines an Aligner for a pair of Sequences. | Interface | org.biojava.nbio.alignment.template | BioJava |
| PairwiseSequenceScorer | Defines an algorithm which computes a score for a pair of sequences. | Interface | org.biojava.nbio.alignment.template | BioJava |
| PartitionRefiner | Defines an algorithm which computes a new alignment Profile by splitting a current alignment and realigning. | Interface | org.biojava.nbio.alignment.template | BioJava |
| ProfileProfileAligner | Defines an Aligner for a pair of Profiles. | Interface | org.biojava.nbio.alignment.template | BioJava |
| ProfileProfileScorer | Defines an algorithm which computes a score for a pairing of alignment profiles. | Interface | org.biojava.nbio.alignment.template | BioJava |
| RescoreRefiner | Interface | org.biojava.nbio.alignment.template | BioJava | |
| Scorer | Defines an algorithm which computes a score. | Interface | org.biojava.nbio.alignment.template | BioJava |