| Name | Description | Type | Package | Framework |
| CompoundNotFoundException | Class | org.biojava.nbio.core.exceptions | BioJava | |
| Messages | Class | org.biojava.nbio.core.exceptions | BioJava | |
| ParserException | General abstraction of different parsing errorsAuthor:Scooter Willis See Also:Serialized Form | Class | org.biojava.nbio.core.exceptions | BioJava |
| TranslationException | Thrown from AbstractCompundTranslatorAuthor:Andy YatesSee Also:Serialized Form | Class | org.biojava.nbio.core.exceptions | BioJava |