Name | Description | Type | Package | Framework |
CaseInsensitiveCompound | Attempts to wrap compounds so it is possible to view them in a case insensitive manner | Class | org.biojava.nbio.core.sequence.transcription | BioJava |
DNAToRNATranslator | Performs the first stage of transcription by going from DNA to RNA. | Class | org.biojava.nbio.core.sequence.transcription | BioJava |
Frame | Indicates a way of translating a sequence. | Class | org.biojava.nbio.core.sequence.transcription | BioJava |
RNAToAminoAcidTranslator | Takes a Sequence of NucleotideCompound which should represent an RNA sequence (RNASequence is good for this) and returns a list of | Class | org.biojava.nbio.core.sequence.transcription | BioJava |
Table | Provides a way of separating us from the specific IUPACParser. | Interface | org.biojava.nbio.core.sequence.transcription | BioJava |
Table .CaseInsensitiveTriplet | to be assessed in a case insensitive manner. | Class | org.biojava.nbio.core.sequence.transcription | BioJava |
Table .Codon | Instance of a Codon which is 3 NucleotideCompounds, its corresponding AminoAcidCompound and if it is a start or stop codon. | Class | org.biojava.nbio.core.sequence.transcription | BioJava |
TranscriptionEngine | Used as a way of encapsulating the data structures required to parse DNA to a In order to build one look at @ TranscriptionEngine. | Class | org.biojava.nbio.core.sequence.transcription | BioJava |
TranscriptionEngine .Builder | This class is the way to create a TranslationEngine. | Class | org.biojava.nbio.core.sequence.transcription | BioJava |