Search Java Classes and Packages
#Org.biojava.nbio.genome Classes and Interfaces - 28 results found.
| Name | Description | Type | Package | Framework |
| App | Class | org.biojava.nbio.genome | BioJava | |
| BlastHomologyHits | Class | org.biojava.nbio.genome.homology | BioJava | |
| BlastXMLQuery | Class | org.biojava.nbio.genome.query | BioJava | |
| Cytoband | Class | org.biojava.nbio.genome.parsers.cytoband | BioJava | |
| CytobandParser | Parses the cytoband (karyotype) file from UCSC. | Class | org.biojava.nbio.genome.parsers.cytoband | BioJava |
| Feature | A Feature corresponds to a single row in a GFF file. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
| FeatureHelper | Class | org.biojava.nbio.genome.parsers.gff | BioJava | |
| FeatureI | A feature on a sequence (for example, an exon or a gene), defined by a location and a set of attributes encoded as key/value pairs. | Interface | org.biojava.nbio.genome.parsers.gff | BioJava |
| FeatureList | A list of FeatureI objects implemented using a Java ArrayList; corresponds to a GFF file. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
| GCStats | Class | org.biojava.nbio.genome.parsers.gff | BioJava | |
| GeneChromosomePosition | Class | org.biojava.nbio.genome.parsers.genename | BioJava | |
| GeneChromosomePositionParser | A parser that parses a file from the UCSC genome browser that contains mapping of gene name to chromosome positionsAuthor:Andreas Prlic | Class | org.biojava.nbio.genome.parsers.genename | BioJava |
| GeneFeatureHelper | Class | org.biojava.nbio.genome | BioJava | |
| GeneIDGFF2Reader | http://www. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
| GeneIDXMLReader | Class | org.biojava.nbio.genome.parsers.geneid | BioJava | |
| GeneMarkGTFReader | http://www. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
| GeneName | A simple bean that contains gene name information as available from www. | Class | org.biojava.nbio.genome.parsers.genename | BioJava |
| GeneNamesParser | Parses a file from the www. | Class | org.biojava.nbio.genome.parsers.genename | BioJava |
| GFF3FromUniprotBlastHits | Class | org.biojava.nbio.genome.homology | BioJava | |
| GFF3Reader | http://www. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
| GFF3Writer | Class | org.biojava.nbio.genome.parsers.gff | BioJava | |
| Location | A location on a sequence. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
| LocIterator | Move a sliding window over a Location. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
| OutputHitsGFF | Class | org.biojava.nbio.genome.query | BioJava | |
| SplitFasta | Utility to write each Fasta entry to a unique fileAuthor:Scooter Willis | Class | org.biojava.nbio.genome.util | BioJava |
| StainType | Class | org.biojava.nbio.genome.parsers.cytoband | BioJava | |
| TwoBitParser | downloaded from http://storage. | Class | org.biojava.nbio.genome.parsers.twobit | BioJava |
| UniprotToFasta | Class | org.biojava.nbio.genome.uniprot | BioJava | |