Name | Description | Type | Package | Framework |
Feature | A Feature corresponds to a single row in a GFF file. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
FeatureHelper | Class | org.biojava.nbio.genome.parsers.gff | BioJava | |
FeatureI | A feature on a sequence (for example, an exon or a gene), defined by a location and a set of attributes encoded as key/value pairs. | Interface | org.biojava.nbio.genome.parsers.gff | BioJava |
FeatureList | A list of FeatureI objects implemented using a Java ArrayList; corresponds to a GFF file. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
GCStats | Class | org.biojava.nbio.genome.parsers.gff | BioJava | |
GeneIDGFF2Reader | http://www. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
GeneMarkGTFReader | http://www. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
GFF3Reader | http://www. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
GFF3Writer | Class | org.biojava.nbio.genome.parsers.gff | BioJava | |
Location | A location on a sequence. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |
LocIterator | Move a sliding window over a Location. | Class | org.biojava.nbio.genome.parsers.gff | BioJava |