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#Org.biojava.nbio.phylo Classes and Interfaces - 7 results found.
Name | Description | Type | Package | Framework |
Comparison | This class provides static methods for the calculation of the percentage of identity between two aligned sequences. | Class | org.biojava.nbio.phylo | BioJava |
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DistanceMatrixCalculator | The DistanceMatrixCalculator methods generate a DistanceMatrix from a MultipleSequenceAlignment or other indirect distance infomation (RMSD). | Class | org.biojava.nbio.phylo | BioJava |
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DistanceTreeEvaluator | Check the accuracy of a Distance Tree by least squares error (LSE) of the Tree branch lengths and the original Distance Matrix. | Class | org.biojava.nbio.phylo | BioJava |
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ForesterWrapper | This class contains wrapper methods for communication between BioJava and forester (e. | Class | org.biojava.nbio.phylo | BioJava |
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TreeConstructor | The TreeConstructor uses the forester library to build different types of phylogenetic trees. | Class | org.biojava.nbio.phylo | BioJava |
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TreeConstructorType | enum TreeConstructorTypeThe TreeConstructorType specifies the aligorithm used to construct the tree | Class | org.biojava.nbio.phylo | BioJava |
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TreeType | The TreeType specifies the optimization criteria used to generate the tree. | Class | org.biojava.nbio.phylo | BioJava |