Search Java Classes and Packages

Search Java Frameworks and Libraries

255581 classes and counting ...
Search Tips Index Status



#Org.biojava.nbio.phylo Classes and Interfaces - 7 results found.
NameDescriptionTypePackageFramework
ComparisonThis class provides static methods for the calculation of the percentage of identity between two aligned sequences.Classorg.biojava.nbio.phyloBioJava
DistanceMatrixCalculatorThe DistanceMatrixCalculator methods generate a DistanceMatrix from a MultipleSequenceAlignment or other indirect distance infomation (RMSD).Classorg.biojava.nbio.phyloBioJava
DistanceTreeEvaluatorCheck the accuracy of a Distance Tree by least squares error (LSE) of the Tree branch lengths and the original Distance Matrix.Classorg.biojava.nbio.phyloBioJava
ForesterWrapperThis class contains wrapper methods for communication between BioJava and forester (e.Classorg.biojava.nbio.phyloBioJava
TreeConstructorThe TreeConstructor uses the forester library to build different types of phylogenetic trees.Classorg.biojava.nbio.phyloBioJava
TreeConstructorTypeenum TreeConstructorTypeThe TreeConstructorType specifies the aligorithm used to construct the treeClassorg.biojava.nbio.phyloBioJava
TreeTypeThe TreeType specifies the optimization criteria used to generate the tree.Classorg.biojava.nbio.phyloBioJava