| Name | Description | Type | Package | Framework |
| ComponentXMLConverter | Class | org.biojava.nbio.protmod.io | BioJava | |
| ModifiedCompoundXMLConverter | Class | org.biojava.nbio.protmod.io | BioJava | |
| ProteinModificationXmlReader | Class | org.biojava.nbio.protmod.io | BioJava | |
| StructureAtomXMLConverter | Class | org.biojava.nbio.protmod.io | BioJava | |
| StructureGroupXMLConverter | Class | org.biojava.nbio.protmod.io | BioJava | |