| Name | Description | Type | Package | Framework |
| Jronn | This class gives public API to RONN functions. | Class | org.biojava.nbio.ronn | BioJava |
| Jronn .Range | Holder for the ranges, contain pointers to starting and ending position on the sequence which comprises a disordered region. | Class | org.biojava.nbio.ronn | BioJava |
| ModelLoader | Class that loads data from the model files into ModelLoader. | Class | org.biojava.nbio.ronn | BioJava |
| ModelLoader .Model | Class | org.biojava.nbio.ronn | BioJava | |
| ModelLoader .Threshold | Class | org.biojava.nbio.ronn | BioJava | |
| NullOutputStream | The stream that void its inputSince:3. | Class | org.biojava.nbio.ronn | BioJava |
| ORonn | Fully re-factored and enhanced version of RONN. | Class | org.biojava.nbio.ronn | BioJava |
| ORonnModel | Fully re-factored version of RONN model. | Class | org.biojava.nbio.ronn | BioJava |
| RonnConstraint | A collection of various constrain values used by RONNSince:3. | Class | org.biojava.nbio.ronn | BioJava |
| RonnConstraint .Threshold | Class | org.biojava.nbio.ronn | BioJava | |
| Timer | A simple timer, calculates the time interval between two events. | Class | org.biojava.nbio.ronn | BioJava |