Search Java Classes and Packages
#Org.biojava.nbio.structure.align.ce Classes and Interfaces - 22 results found.
| Name | Description | Type | Package | Framework |
| AbstractUserArgumentProcessor | Base class for a new structure alignment CLI. | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CECalculator | This is based on the original Combinatorial Extension (CE) source code from 2003 or 2004 (CE version 2. | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CeCalculatorEnhanced | This is based on the original Combinatorial Extension (CE) source code from 2003 or 2004 (CE version 2. | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CeCPMain | A wrapper for CeMain which sets default parameters to be appropriate for finding circular permutations. | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CeCPMain .CPRange | Tiny wrapper for the disallowed regions of an alignment. | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CECPParameters | Provides parameters to CeCPMainAuthor:Spencer Bliven | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CECPParameters .DuplicationHint | Class | org.biojava.nbio.structure.align.ce | BioJava | |
| CeCPUserArgumentProcessor | Class | org.biojava.nbio.structure.align.ce | BioJava | |
| CeMain | The main class of the Java implementation of the Combinatorial Extension Algorithm (CE), as has been originally developed by I. | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CeParameters | Contains the parameters that can be sent to CEAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CeParameters .ScoringStrategy | Class | org.biojava.nbio.structure.align.ce | BioJava | |
| CeSideChainMain | Class | org.biojava.nbio.structure.align.ce | BioJava | |
| CeSideChainUserArgumentProcessor | Class | org.biojava.nbio.structure.align.ce | BioJava | |
| CeUserArgumentProcessor | process the arguments from command lineAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.align.ce | BioJava |
| CeUserArgumentProcessor .CeStartupParams | Class | org.biojava.nbio.structure.align.ce | BioJava | |
| ConfigStrucAligParams | Interface | org.biojava.nbio.structure.align.ce | BioJava | |
| GuiWrapper | A class to wrap some of the strucutre. | Class | org.biojava.nbio.structure.align.ce | BioJava |
| MatrixListener | Interface | org.biojava.nbio.structure.align.ce | BioJava | |
| OptimalCECPMain | A wrapper for CeMain which sets default parameters to be appropriate for finding circular permutations. | Class | org.biojava.nbio.structure.align.ce | BioJava |
| OptimalCECPParameters | Contains the parameters that can be sent to CEAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.align.ce | BioJava |
| StartupParameters | a simple bean that contains the parameters that can get set at startupAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.align.ce | BioJava |
| UserArgumentProcessor | Interface | org.biojava.nbio.structure.align.ce | BioJava | |