Search Java Classes and Packages
#Org.biojava.nbio.structure.align.gui Classes and Interfaces - 55 results found.
| Name | Description | Type | Package | Framework |
| AboutDialog | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| AbstractAlignmentJmol | An Abstract Class to generalize the visualization of AFP and MultipleAlignment structure alignments in Jmol. | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava |
| AFPChainCoordManager | Class | org.biojava.nbio.structure.align.gui.aligpanel | BioJava | |
| AlignmentCalc | A class that obtains two structures via DAS and aligns them This is done in a separate thread. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| AlignmentCalcDB | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| AlignmentCalculationRunnable | Interface | org.biojava.nbio.structure.align.gui | BioJava | |
| AlignmentGui | A JFrame that allows to trigger a pairwise structure alignment, either from files in a directory, | Class | org.biojava.nbio.structure.align.gui | BioJava |
| AlignmentTextPanel | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| AligPanel | A JPanel that can display an AFPChain in a nice way and interact with Jmol. | Class | org.biojava.nbio.structure.align.gui.aligpanel | BioJava |
| AligPanelMouseMotionListener | Class | org.biojava.nbio.structure.align.gui.aligpanel | BioJava | |
| AtomInfo | This class uniquely describes an atomAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava |
| AtomInfoParser | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava | |
| AutoSuggestProvider | Interface | org.biojava.nbio.structure.align.gui.autosuggest | BioJava | |
| ChooseDirAction | Ask the user to provide a directory containting PDB files. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| ConfigPDBInstallPanel | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| DBResultTable | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| DBSearchGUI | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| DefaultAutoSuggestProvider | Class | org.biojava.nbio.structure.align.gui.autosuggest | BioJava | |
| DisplayAFP | A utility class for visualistion of structure alignmentsAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.align.gui | BioJava |
| DotPlotPanel | Displays the dot plot trace for an alignment. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| GUIAlignmentProgressListener | a GUI that allows to watch progress as multiple alignments are being processed. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| GUIFarmJobRunnable | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| HelpDialog | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| JAutoSuggest | A JTextField that can make suggestions for auto-complete. | Class | org.biojava.nbio.structure.align.gui.autosuggest | BioJava |
| JmolPanel | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava | |
| JmolTools | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava | |
| JPrintPanel | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| MemoryMonitor | Tracks Memory allocated & used, displayed in graph form. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MenuCreator | Create the menus for structure alignment GUI windows (JFrames). | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MenuCreator .DotPlotListener | Creates a frame to display a DotPlotPanel. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MultipleAlignmentCalc | A class that obtains structures via DAS and aligns them. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MultipleAlignmentCoordManager | Generalization of the Coodinate Manager to include an arbitrary number of sequences (lines) for MultipleAlignment visualization. | Class | org.biojava.nbio.structure.align.gui.aligpanel | BioJava |
| MultipleAlignmentGUI | A JFrame that allows to trigger a multiple structure alignment, either from files in a directory or after manual upload. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MultipleAlignmentJmol | A class that provides a 3D visualization Frame in Jmol for MultipleAlignments. | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava |
| MultipleAlignmentJmolDisplay | Utility Class that provides helper methods for the visualization of MultipleAlignments. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MultipleAligPanel | A JPanel that can display the sequence alignment of a MultipleAlignment in a nice way and interact with Jmol by | Class | org.biojava.nbio.structure.align.gui.aligpanel | BioJava |
| MultipleAligPanelMouseMotionListener | Mouse Motion Listener for the MultipleAligPanel, which provides methods to obtain positions of the mouse | Class | org.biojava.nbio.structure.align.gui.aligpanel | BioJava |
| MultipleStatusDisplay | This class provides information of the selected positions in the It has to be linked to a MultipleAligPanel in order to obtain | Class | org.biojava.nbio.structure.align.gui.aligpanel | BioJava |
| MyAlignmentLoadListener | Loads an alignment in an XML format and displays its content in a new Jmol panel. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MyDistMaxListener | Shows the interatomic Distance Matrices of all the Structures aligned in different Frames. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MyExportListener | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| MyJmolStatusListener | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava | |
| MyOpenPdbFileListener | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| MySaveFileListener | Save an alignment to a specified File by the user. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| MyTableRowSorter | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| ParameterGUI | UI for ConfigStrucAligParams, for the AlignmentGUI. | Class | org.biojava.nbio.structure.align.gui | BioJava |
| RasmolCommandListener | a utility class that listens to Ramsol script commands in the @link BiojavaJmol classAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava |
| SCOPAutoSuggestProvider | Class | org.biojava.nbio.structure.align.gui.autosuggest | BioJava | |
| SelectPDBPanel | A Panel that allows user to specify PDB & chain ID, as well as sub-rangesAuthor:AndreasSee Also:Serialized Form | Class | org.biojava.nbio.structure.align.gui | BioJava |
| ShowPDBIDListener | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| StatusDisplay | Class | org.biojava.nbio.structure.align.gui.aligpanel | BioJava | |
| StructureAlignmentDisplay | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| StructureAlignmentJmol | A class that provides a simple GUI for JmolSince:1. | Class | org.biojava.nbio.structure.align.gui.jmol | BioJava |
| StructureLoaderThread | Class | org.biojava.nbio.structure.align.gui | BioJava | |
| SystemInfo | Class | org.biojava.nbio.structure.align.gui | BioJava | |