Name | Description | Type | Package | Framework |
AtomContact | A pair of atoms that are in contactAuthor:duarte_jSee Also:Serialized Form | Class | org.biojava.nbio.structure.contact | BioJava |
AtomContactSet | A set of atom-atom contacts to hold the results of intra and inter-chain contact calculationsAuthor:duarte_jSee Also:Serialized Form | Class | org.biojava.nbio.structure.contact | BioJava |
AtomIdentifier | Class | org.biojava.nbio.structure.contact | BioJava | |
BoundingBox | A bounding box for short cutting some geometrical calculations. | Class | org.biojava.nbio.structure.contact | BioJava |
Grid | A grid to be used for calculating atom contacts through geometric hashing algorithm. | Class | org.biojava.nbio.structure.contact | BioJava |
GridCell | A grid cell to be used in contact calculation via geometric hashing algorithm. | Class | org.biojava.nbio.structure.contact | BioJava |
GroupContact | A pair of residues that are in contactAuthor:duarte_jSee Also:Serialized Form | Class | org.biojava.nbio.structure.contact | BioJava |
GroupContactSet | A set of residue-residue contacts. | Class | org.biojava.nbio.structure.contact | BioJava |
Pair | A Pair of objects. | Class | org.biojava.nbio.structure.contact | BioJava |
StructureInterface | An interface between 2 molecules (2 sets of atoms). | Class | org.biojava.nbio.structure.contact | BioJava |
StructureInterfaceCluster | Class | org.biojava.nbio.structure.contact | BioJava | |
StructureInterfaceList | A list of interfaces between 2 molecules (2 sets of atoms)Author:duarte_jSee Also:Serialized Form | Class | org.biojava.nbio.structure.contact | BioJava |