Search Java Classes and Packages
#Org.biojava.nbio.structure.gui Classes and Interfaces - 38 results found.
| Name | Description | Type | Package | Framework |
| AlignedPosition | Class | org.biojava.nbio.structure.gui.util | BioJava | |
| AlignmentCalc | A class that obtains two structures via DAS and aligns them This is done in a separate thread. | Class | org.biojava.nbio.structure.gui.util | BioJava |
| AlignmentPositionListener | Interface | org.biojava.nbio.structure.gui.events | BioJava | |
| AlternativeAlignmentFrame | a frame showing the alternative alignments, which are the result of a structure superimpositionSince:1. | Class | org.biojava.nbio.structure.gui.util | BioJava |
| BiojavaJmol | A class that provides a simple GUI for JmolSince:1. | Class | org.biojava.nbio.structure.gui | BioJava |
| ColorInterpolator | Interface | org.biojava.nbio.structure.gui.util.color | BioJava | |
| ColorUtils | Class | org.biojava.nbio.structure.gui.util.color | BioJava | |
| ContinuousColorMapper | Provides a mapping between real numbers and Colors. | Interface | org.biojava.nbio.structure.gui.util.color | BioJava |
| ContinuousColorMapperTransform | Maps colors by performing a transform of the input data and then passing the transformed value to a ContinuousColorMapper for rendering. | Class | org.biojava.nbio.structure.gui.util.color | BioJava |
| CoordManager | a class that manages the conversion of sequence coordinate system to JPanel drawing coordinates | Class | org.biojava.nbio.structure.gui.util | BioJava |
| DefaultMatrixMapper | Color Mapper which mimics the default coloring of JMatrixPanel pixels. | Class | org.biojava.nbio.structure.gui.util.color | BioJava |
| GradientMapper | Maps a set of real values onto a gradient. | Class | org.biojava.nbio.structure.gui.util.color | BioJava |
| GradientPanel | Class | org.biojava.nbio.structure.gui.util.color | BioJava | |
| HSVColorSpace | Class | org.biojava.nbio.structure.gui.util.color | BioJava | |
| JMatrixPanel | a JPanel that can display a difference of distance matrix and paths that have been taken for the alignment | Class | org.biojava.nbio.structure.gui | BioJava |
| JmolAlignedPositionListener | Class | org.biojava.nbio.structure.gui.events | BioJava | |
| JmolViewerImpl | Class | org.biojava.nbio.structure.gui | BioJava | |
| LinearColorInterpolator | Class | org.biojava.nbio.structure.gui.util.color | BioJava | |
| LinearColorInterpolator .InterpolationDirection | Class | org.biojava.nbio.structure.gui.util.color | BioJava | |
| LogColorMapper | Performs a log10 transform on input before passing the values off to another For instance, to map [10^0, 10^10] to a rainbow gradient, use | Class | org.biojava.nbio.structure.gui.util.color | BioJava |
| MenuCreator | Create the menu for BiojavaJmolSince:1. | Class | org.biojava.nbio.structure.gui.util | BioJava |
| PDBDirPanel | A class to define where a structure for the alignment is coming fromSince:1. | Class | org.biojava.nbio.structure.gui.util | BioJava |
| PDBServerPanel | A class to define where a structure for the alignment is coming fromSince:1. | Class | org.biojava.nbio.structure.gui.util | BioJava |
| PDBUploadPanel | A JPanel to upload 2 custom PDB files. | Class | org.biojava.nbio.structure.gui.util | BioJava |
| RasmolCommandListener | a utility class that listens to Ramsol script commands in the @link BiojavaJmol classAuthor:Andreas Prlic | Class | org.biojava.nbio.structure.gui | BioJava |
| RenderStyle | Class | org.biojava.nbio.structure.gui | BioJava | |
| ScaleableMatrixPanel | A JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm. | Class | org.biojava.nbio.structure.gui | BioJava |
| ScopInstallationInstance | Class | org.biojava.nbio.structure.gui.util | BioJava | |
| ScopSelectPanel | Class | org.biojava.nbio.structure.gui.util | BioJava | |
| Selection | Interface | org.biojava.nbio.structure.gui | BioJava | |
| SelectionImpl | Class | org.biojava.nbio.structure.gui | BioJava | |
| SelectMultiplePanel | A Text Panel that allows the user to specify multiple structure identifiers, space separated. | Class | org.biojava.nbio.structure.gui.util | BioJava |
| SequenceDisplay | A sequence display that can show the results of a protein structure alignment. | Class | org.biojava.nbio.structure.gui | BioJava |
| SequenceMouseListener | a mouse listener for the AbstractChainRenderer class it listens to all mouse events and triggeres appropriate | Class | org.biojava.nbio.structure.gui.util | BioJava |
| SequenceScalePanel | A class that draws a Sequence as a rectangle, a scale display over it. | Class | org.biojava.nbio.structure.gui.util | BioJava |
| SqrtColorMapper | Performs a sqrt transform on input before passing the values off to another For instance, to map [0^2, 10^2] to a rainbow gradient, use | Class | org.biojava.nbio.structure.gui.util.color | BioJava |
| StructurePairSelector | To be implemented by JPanels that are part of the GUI to trigger structure aligmnents. | Interface | org.biojava.nbio.structure.gui.util | BioJava |
| StructureViewer | Interface | org.biojava.nbio.structure.gui | BioJava | |