| Name | Description | Type | Package | Framework |
| CholeskyDecomposition | Cholesky Decomposition. | Class | org.biojava.nbio.structure.jama | BioJava |
| EigenvalueDecomposition | Eigenvalues and eigenvectors of a real matrix. | Class | org.biojava.nbio.structure.jama | BioJava |
| LUDecomposition | For an m-by-n matrix A with m >= n, the LU decomposition is an m-by-n unit lower triangular matrix L, an n-by-n upper triangular matrix U, | Class | org.biojava.nbio.structure.jama | BioJava |
| Maths | Class | org.biojava.nbio.structure.jama | BioJava | |
| Matrix | Jama = Java Matrix class. | Class | org.biojava.nbio.structure.jama | BioJava |
| QRDecomposition | For an m-by-n matrix A with m >= n, the QR decomposition is an m-by-n orthogonal matrix Q and an n-by-n upper triangular matrix R so that | Class | org.biojava.nbio.structure.jama | BioJava |
| SingularValueDecomposition | Singular Value Decomposition. | Class | org.biojava.nbio.structure.jama | BioJava |