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#Org.biojava.nbio.structure.scop Classes and Interfaces - 21 results found.
NameDescriptionTypePackageFramework
AstralProvides programmatic access to ASTRAL representative sets.Classorg.biojava.nbio.structure.scopBioJava
Astral .AstralSetAn ASTRAL sequence-identity cutoff with an identifier such as: Also contains a URL pointing to a FASTA file containing the representatives.Classorg.biojava.nbio.structure.scopBioJava
BerkeleyScopInstallation The Structural Classification of Proteins (extended) at Berkeley Lab and UC Berkeley (http://scop.Classorg.biojava.nbio.structure.scopBioJava
CachedRemoteScopInstallationAn extension of the RemoteScopInstallation that caches some of the data locally.Classorg.biojava.nbio.structure.scopBioJava
ListStringWrapperClassorg.biojava.nbio.structure.scop.serverBioJava
LocalScopDatabaseClasses which implement ScopDatabase in a way which allows them to serve queries without accessing the internet should implement this interface instead.Interfaceorg.biojava.nbio.structure.scopBioJava
RemoteScopInstallationA class that fetches information about SCOP from a remote data-source.Classorg.biojava.nbio.structure.scopBioJava
ScopCategoryThe various categories provided by SCOP.Classorg.biojava.nbio.structure.scopBioJava
ScopDatabaseGeneral API how to interact with SCOPSince:3.Interfaceorg.biojava.nbio.structure.scopBioJava
ScopDescription dir.Classorg.biojava.nbio.structure.scopBioJava
ScopDescriptionsClassorg.biojava.nbio.structure.scop.serverBioJava
ScopDomainContainer for the information for a domain.Classorg.biojava.nbio.structure.scopBioJava
ScopDomainsClassorg.biojava.nbio.structure.scop.serverBioJava
ScopFactoryControls the global ScopDatabase being used.Classorg.biojava.nbio.structure.scopBioJava
ScopInstallationThis class provides access to the SCOP protein structure classification.Classorg.biojava.nbio.structure.scopBioJava
ScopIOExceptionIndicates that an I/O error occurred with SCOP lazy initialization.Classorg.biojava.nbio.structure.scopBioJava
ScopMirrorHelper class to store paths to the four SCOP files The string "%s" is replaced with the version number.Classorg.biojava.nbio.structure.scopBioJava
ScopNodeClassorg.biojava.nbio.structure.scopBioJava
ScopNodesClassorg.biojava.nbio.structure.scop.serverBioJava
TreeSetStringWrapperClassorg.biojava.nbio.structure.scop.serverBioJava
XMLUtilUtility classes for the XML serialization and de-serialization of SCOP.Classorg.biojava.nbio.structure.scop.serverBioJava