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#Org.biojava.nbio.structure.scop Classes and Interfaces - 21 results found.
| Name | Description | Type | Package | Framework |
| Astral | Provides programmatic access to ASTRAL representative sets. | Class | org.biojava.nbio.structure.scop | BioJava |
| Astral .AstralSet | An ASTRAL sequence-identity cutoff with an identifier such as: Also contains a URL pointing to a FASTA file containing the representatives. | Class | org.biojava.nbio.structure.scop | BioJava |
| BerkeleyScopInstallation | The Structural Classification of Proteins (extended) at Berkeley Lab and UC Berkeley (http://scop. | Class | org.biojava.nbio.structure.scop | BioJava |
| CachedRemoteScopInstallation | An extension of the RemoteScopInstallation that caches some of the data locally. | Class | org.biojava.nbio.structure.scop | BioJava |
| ListStringWrapper | Class | org.biojava.nbio.structure.scop.server | BioJava | |
| LocalScopDatabase | Classes which implement ScopDatabase in a way which allows them to serve queries without accessing the internet should implement this interface instead. | Interface | org.biojava.nbio.structure.scop | BioJava |
| RemoteScopInstallation | A class that fetches information about SCOP from a remote data-source. | Class | org.biojava.nbio.structure.scop | BioJava |
| ScopCategory | The various categories provided by SCOP. | Class | org.biojava.nbio.structure.scop | BioJava |
| ScopDatabase | General API how to interact with SCOPSince:3. | Interface | org.biojava.nbio.structure.scop | BioJava |
| ScopDescription | dir. | Class | org.biojava.nbio.structure.scop | BioJava |
| ScopDescriptions | Class | org.biojava.nbio.structure.scop.server | BioJava | |
| ScopDomain | Container for the information for a domain. | Class | org.biojava.nbio.structure.scop | BioJava |
| ScopDomains | Class | org.biojava.nbio.structure.scop.server | BioJava | |
| ScopFactory | Controls the global ScopDatabase being used. | Class | org.biojava.nbio.structure.scop | BioJava |
| ScopInstallation | This class provides access to the SCOP protein structure classification. | Class | org.biojava.nbio.structure.scop | BioJava |
| ScopIOException | Indicates that an I/O error occurred with SCOP lazy initialization. | Class | org.biojava.nbio.structure.scop | BioJava |
| ScopMirror | Helper class to store paths to the four SCOP files The string "%s" is replaced with the version number. | Class | org.biojava.nbio.structure.scop | BioJava |
| ScopNode | Class | org.biojava.nbio.structure.scop | BioJava | |
| ScopNodes | Class | org.biojava.nbio.structure.scop.server | BioJava | |
| TreeSetStringWrapper | Class | org.biojava.nbio.structure.scop.server | BioJava | |
| XMLUtil | Utility classes for the XML serialization and de-serialization of SCOP. | Class | org.biojava.nbio.structure.scop.server | BioJava |