Name | Description | Type | Package | Framework |
Astral | Provides programmatic access to ASTRAL representative sets. | Class | org.biojava.nbio.structure.scop | BioJava |
Astral .AstralSet | An ASTRAL sequence-identity cutoff with an identifier such as: Also contains a URL pointing to a FASTA file containing the representatives. | Class | org.biojava.nbio.structure.scop | BioJava |
BerkeleyScopInstallation | The Structural Classification of Proteins (extended) at Berkeley Lab and UC Berkeley (http://scop. | Class | org.biojava.nbio.structure.scop | BioJava |
CachedRemoteScopInstallation | An extension of the RemoteScopInstallation that caches some of the data locally. | Class | org.biojava.nbio.structure.scop | BioJava |
ListStringWrapper | Class | org.biojava.nbio.structure.scop.server | BioJava | |
LocalScopDatabase | Classes which implement ScopDatabase in a way which allows them to serve queries without accessing the internet should implement this interface instead. | Interface | org.biojava.nbio.structure.scop | BioJava |
RemoteScopInstallation | A class that fetches information about SCOP from a remote data-source. | Class | org.biojava.nbio.structure.scop | BioJava |
ScopCategory | The various categories provided by SCOP. | Class | org.biojava.nbio.structure.scop | BioJava |
ScopDatabase | General API how to interact with SCOPSince:3. | Interface | org.biojava.nbio.structure.scop | BioJava |
ScopDescription | dir. | Class | org.biojava.nbio.structure.scop | BioJava |
ScopDescriptions | Class | org.biojava.nbio.structure.scop.server | BioJava | |
ScopDomain | Container for the information for a domain. | Class | org.biojava.nbio.structure.scop | BioJava |
ScopDomains | Class | org.biojava.nbio.structure.scop.server | BioJava | |
ScopFactory | Controls the global ScopDatabase being used. | Class | org.biojava.nbio.structure.scop | BioJava |
ScopInstallation | This class provides access to the SCOP protein structure classification. | Class | org.biojava.nbio.structure.scop | BioJava |
ScopIOException | Indicates that an I/O error occurred with SCOP lazy initialization. | Class | org.biojava.nbio.structure.scop | BioJava |
ScopMirror | Helper class to store paths to the four SCOP files The string "%s" is replaced with the version number. | Class | org.biojava.nbio.structure.scop | BioJava |
ScopNode | Class | org.biojava.nbio.structure.scop | BioJava | |
ScopNodes | Class | org.biojava.nbio.structure.scop.server | BioJava | |
TreeSetStringWrapper | Class | org.biojava.nbio.structure.scop.server | BioJava | |
XMLUtil | Utility classes for the XML serialization and de-serialization of SCOP. | Class | org.biojava.nbio.structure.scop.server | BioJava |