Name | Description | Type | Package | Framework |
AxisAligner | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
C2RotationSolver | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
ChainClusterer | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
ClusterMerger | Merges clusters based on their sequence identity. | Class | org.biojava.nbio.structure.symmetry.core | BioJava |
ClusterProteinChains | Clusters the chains of one or two structures by sequence. | Class | org.biojava.nbio.structure.symmetry.core | BioJava |
HelicalRepeatUnit | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
Helix | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
HelixAxisAligner | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
HelixExtender | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
HelixLayers | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
HelixSolver | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
PairwiseAlignment | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
PermutationGroup | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
ProteinChainExtractor | Extracts information about all the chains in a structure, including chain Ids, sequences, and atoms. | Class | org.biojava.nbio.structure.symmetry.core | BioJava |
ProteinSequenceClusterer | Represents a set of non-identical protein sequences. | Class | org.biojava.nbio.structure.symmetry.core | BioJava |
QuatSuperpositionScorer | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
QuatSymmetryDetector | Detects global and local quaternary protein structure symmetry in a structure. | Class | org.biojava.nbio.structure.symmetry.core | BioJava |
QuatSymmetryParameters | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
QuatSymmetryResults | Holds the results of quaternary symmetry perception. | Class | org.biojava.nbio.structure.symmetry.core | BioJava |
QuatSymmetryScores | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
QuatSymmetrySolver | Interface | org.biojava.nbio.structure.symmetry.core | BioJava | |
Rotation | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
RotationAxisAligner | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
RotationGroup | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
RotationSolver | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
SequenceAlignmentCluster | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
SubunitGraph | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
Subunits | A bean to represent info about the set of subunits being considered for a QuatSymmetryDetector alignment. | Class | org.biojava.nbio.structure.symmetry.core | BioJava |
SystematicSolver | Class | org.biojava.nbio.structure.symmetry.core | BioJava | |
UniqueSequenceList | Bean for a single sequence. | Class | org.biojava.nbio.structure.symmetry.core | BioJava |