| Name | Description | Type | Package | Framework |
| BlastClustReader | Class | org.biojava.nbio.structure.symmetry.utils | BioJava | |
| CombinationGenerator | Class | org.biojava.nbio.structure.symmetry.utils | BioJava | |
| PermutationGenerator | Class | org.biojava.nbio.structure.symmetry.utils | BioJava | |
| SymmetryTools | Utility methods for the internal symmetry identification and manipulation. | Class | org.biojava.nbio.structure.symmetry.utils | BioJava |