| Name | Description | Type | Package | Framework |
| AgScore | Class | org.biojava.nbio.survival.cox.stats | BioJava | |
| ChiSq | Class | org.biojava.nbio.survival.cox.stats | BioJava | |
| Cholesky2 | Class | org.biojava.nbio.survival.cox.stats | BioJava | |
| Chsolve2 | Class | org.biojava.nbio.survival.cox.stats | BioJava | |
| CoxCC | Class | org.biojava.nbio.survival.cox | BioJava | |
| CoxCoefficient | Class | org.biojava.nbio.survival.cox | BioJava | |
| CoxComparatorInterface | Interface | org.biojava.nbio.survival.cox.comparators | BioJava | |
| CoxHelper | The CoxHelper class is provided to start with a tab delimited file in a similar process in R and return the results as a CoxInfo class. | Class | org.biojava.nbio.survival.cox | BioJava |
| CoxInfo | Holds the results of a cox analysis where calling dump(), toString() will give an output similar to RAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
| CoxMart | Class | org.biojava.nbio.survival.cox | BioJava | |
| CoxMethod | Class | org.biojava.nbio.survival.cox | BioJava | |
| CoxR | This is a port of the R survival code used for doing Cox Regression. | Class | org.biojava.nbio.survival.cox | BioJava |
| CoxScore | Class | org.biojava.nbio.survival.cox | BioJava | |
| CoxVariables | Class | org.biojava.nbio.survival.cox | BioJava | |
| CoxVariablesOverallModelFitComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
| CoxVariablesVariableComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
| Matrix | *********************************************************************** Compilation: javac Matrix. | Class | org.biojava.nbio.survival.cox.matrix | BioJava |
| MeanModelComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
| ResidualsCoxph | Class | org.biojava.nbio.survival.cox | BioJava | |
| ResidualsCoxph .Type | Class | org.biojava.nbio.survival.cox | BioJava | |
| RiskInfo | Class | org.biojava.nbio.survival.cox | BioJava | |
| StdArrayIO | Standard array IO. | Class | org.biojava.nbio.survival.cox.matrix | BioJava |
| StrataInfo | Information needed to represent a survival curveAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
| SurvFitInfo | Contains info for graphing km figuresAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
| SurvivalInfo | Data class to represent a single sample where time and event/censor status is required Additionally each variable and data associated with that variable. | Class | org.biojava.nbio.survival.cox | BioJava |
| SurvivalInfoComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
| SurvivalInfoHelper | Used to work with SurvivalInfoAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
| SurvivalInfoIndex | Not used and probably should be deletedAuthor:Scooter Willis | Class | org.biojava.nbio.survival.cox | BioJava |
| SurvivalInfoValueComparator | Class | org.biojava.nbio.survival.cox.comparators | BioJava | |
| WaldTest | Class | org.biojava.nbio.survival.cox | BioJava | |
| WaldTestInfo | Class | org.biojava.nbio.survival.cox | BioJava | |